Generic GTPase nucleotide switch motif (GEF / GTP / GAP)

The minimal, reusable nucleotide-switch motif shared by regulatory GTPases: a guanine-nucleotide exchange factor (GEF) loads GTP to flip the GTPase into its active conformation, where it engages downstream effectors; a GTPase-activating protein (GAP) then stimulates GTP hydrolysis to return the switch to its inactive GDP-bound state. The motif is deliberately gene-free and taxon-neutral: it fixes only the GEF/GTPase/GAP roles (by molecular-function term) and the load/hydrolyze topology. Concrete switches - the Ras, Rho/Rac/Cdc42, Rab, Arf, Ran, and heterotrimeric-Galpha families - embed this motif as an inner bundle through `conforms_to`, substituting their own GEF/GTPase/GAP and the specific effectors they activate. Grounded in GO:0007264 (small GTPase-mediated signal transduction).

MODULE:gtpase_switchDRAFTSignaling Pathwaymodules/gtpase_switch.yaml
small GTPase-mediated signal transductionGO:0007264
GO:0007264
small GTPase-mediated signal transduction
The motif is grounded in small GTPase-mediated signal transduction, the binary GTP/GDP switch that couples upstream GEFs to downstream effectors.

Reusable conformance target. A node in a concrete pathway declares `conforms_to: [{template: gtpase_switch}]` when its steps instantiate the GEF-load / active-GTPase / GAP-hydrolyze switch. The Ras switch inlined in MODULE:erk_cascade is one realization. Participants are abstract selectors because the motif asserts the switch chemistry only.

4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
2Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:gtpase_switch deep-research report alongside the module YAML.

Leaf nodes lacking representative members

3 leaf node(s) with no concrete protein grounding:

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (0/0 grounded genes reviewed)

No concrete UniProt-grounded genes in this module.

Details

GTPase nucleotide switch (GEF / GTP / GAP)Signaling Pathwaygtpase_switch
small GTPase-mediated signal transductionGO:0007264

Connections

GEF loading produces the active GTP-bound GTPase.
gap_step -> active_gtpase Negatively Regulates
GAP stimulates hydrolysis, switching the GTPase off.
Part 1: GEF-catalyzed GTP loading
GEF-catalyzed GDP-for-GTP exchangeReactiongef_step

A GEF catalyzes release of GDP and binding of GTP, switching the GTPase on.

Annotons

guanine-nucleotide exchange factor activity
gef_activity
Participant: Any With Function: guanyl-nucleotide exchange factor activity
Required Function:
guanyl-nucleotide exchange factor activityGO:0005085

Function

guanyl-nucleotide exchange factor activityGO:0005085
Targets: GTPase

Loads GTP onto the GTPase, activating the switch.

Part 2: active GTP-bound GTPase
Active GTP-bound GTPaseReactionactive_gtpase

The GTP-bound GTPase adopts its active conformation, engages effectors, and possesses intrinsic GTP-hydrolytic activity that resets the switch.

Annotons

GTPase activity
gtpase_activity
Participant: Any With Function: GTPase activity
Required Function:
GTPase activityGO:0003924

Function

GTPase activityGO:0003924

Processes

small GTPase-mediated signal transductionGO:0007264

Binary switch; active when GTP-bound, engages effectors.

Part 3: GAP-stimulated switch-off
GAP-stimulated GTP hydrolysisReactiongap_step

A GAP accelerates GTP hydrolysis, returning the GTPase to its inactive GDP-bound state.

Annotons

GTPase activator activity
gap_activity
Participant: Any With Function: GTPase activator activity
Required Function:
GTPase activator activityGO:0005096

Function

GTPase activator activityGO:0005096

Stimulates GTP hydrolysis to switch the GTPase off.