Function
Processes
Locations
Stress-activated master transcription factor; a latent monomer that homotrimerizes to bind HSEs and induce chaperone genes.
The heat shock response couples proteotoxic stress to transcriptional induction of the cytosolic chaperone network. Its driver is heat shock factor (HSF), a winged helix-turn-helix transcription factor found across eukaryotes. HSF binds heat shock elements (HSEs), inverted nGAAn pentamer repeats, as a homotrimer and activates RNA polymerase II transcription of chaperone genes. How HSF is held in check differs between lineages. In metazoans, exemplified by human HSF1, HSF is kept as an inert monomer in complexes with HSP90 and HSP70. Proteotoxic stress titrates these chaperones away, and HSF1 then trimerizes, binds HSEs and concentrates in nuclear stress granules. The induced chaperones feed back to switch HSF1 off. In budding yeast, Hsf1 is constitutively trimeric and nuclear. Its essential job is to maintain basal expression of the Hsp70 and Hsp90 genes, and stress raises its activity further. The chaperone output falls into three activities. Hsp70 family foldases refold non-native clients by ATP-driven cycles. J-domain co-chaperones deliver clients and stimulate the Hsp70 ATPase, and HSP110- and BAG-family nucleotide-exchange factors reset the cycle. HSP90 is an ATP-dependent chaperone for metastable signaling and structural clients and is also the main repressor of metazoan HSF1. Small heat shock proteins are ATP-independent holdases that keep heat-denatured proteins soluble and refolding-competent for the ATP-dependent chaperones. Nematodes add an HSF-1/DAF-16-co-regulated branch of atypical 12-kDa small HSPs that contributes to longevity rather than to the acute response. In C. elegans the capacity of the response also falls sharply at the onset of reproduction, when repressive chromatin at stress loci blocks HSF-1 binding.
History. This module was first curated as a C. elegans-only module (MODULE:c_elegans_heat_shock_response) and was generalized to the eukaryotic HSF-driven response. The worm evidence is kept; human and yeast exemplars were added from their gene reviews. C. elegans members remain among the representative members of every role. Boundary. The module covers HSF activation and HSE binding (part 1) and the cytosolic chaperone output it induces (parts 2 to 4), with an optional nematode-specific atypical sHSP branch (part 5). The context taxon is Eukaryota because HSF, Hsp70, HSP90 and the BAG and HSP110 exchange factors have PAINT nodes at or above Eukaryota (see ancestral_nodes). The representative members are opisthokont only (human, yeast, worm). The small HSP holdase node (PTN000897708) is placed at Eumetazoa, so yeast Hsp26/Hsp42 are not used as representatives. Excluded: heat-shock-independent HSF programs, such as the worm developmental program with EFL-1/DPL-1 (PMID:27688402), linker cell death through the ubiquitin-proteasome system (PMID:26952214) and autophagy induction after hormetic heat (PMID:28198373). HSF1 roles in mitosis, DNA repair and cancer are also excluded, as are the ER unfolded protein response and the mitochondrial UPR. HSF also induces the chaperonin CCT/TRiC, which is modeled separately in MODULE:cct_chaperonin_folding and is not repeated here. Activation mode as a variant set. Part 1 uses a variant set with the axis taxon / HSF activation mode. The metazoan variant is a latent monomer that trimerizes under stress and is repressed by HSP90 and HSP70 (human HSF1). Worm HSF-1 is placed in this variant by family membership and by its restraint at an early activation step by DDL-1/DDL-2. It differs from human HSF1 in two ways: it is constitutively nuclear (PMID:23107491), and a stress-triggered monomer-to-trimer switch has not been shown directly in the worm. The yeast variant is constitutively trimeric and nuclear, and its essential output is basal Hsp70/Hsp90 expression. The family-level MF is GO:0001228, as in the human and yeast reviews. The worm hsf-1 review asserts its parent GO:0003700. HSP90 feedback on HSF. HSP90 represses human HSF1 (PMID:9727490). This is modeled as a NEGATIVELY_REGULATES connection from the HSP90 part to HSF activation, with metazoan context. The human HSF1 review also lists HSP70/DNAJB1 complexes as repressors, and yeast Hsf1 is under Hsp70/Hsp90 feedback (yeast HSF1 review). These are recorded in prose only, because this module cites no verbatim quote for the HSP70 arm. No cached worm study tests whether HSP-90 binds or represses HSF-1, so the connection is not asserted for nematodes (see knowledge_gaps). Regulators kept as context. Worm DDL-1/DDL-2 hold HSF-1 inactive under insulin/IGF-1-like signaling (PMID:22265419). PQM-1 contributes to heat induction of worm hsp-90 (PMID:29949773). JMJD-3.1 and H3K27me3 set the reproductive decline of the worm response (PMID:26212459). None of these has a gene review, so they are not modeled as members. HSF1 post-translational modifications (phosphorylation, SUMOylation, acetylation) are likewise left to the HSF1 review. Hsp70 cofactors. The J-domain role is grounded by human DNAJB1 only. No worm Hsp40 (DNJ) gene has a review, and no cached paper names the HSF-1-induced worm Hsp40 partner. DNJ-13 (PMID:25053410) and DNJ-19 (PMID:19165329) are mentioned in text only. Human HSPH1 (HSP110) has no review and is not used, so worm HSP-110 is the only HSP110 representative. The HSPA1A review gives its core MF as the parent GO:0044183, while its description calls HSPA1A an ATP-dependent foldase. The family-level MF here is GO:0140662, as in the worm hsp-1, hsp-70 and F44E5.4 reviews. Small HSP holdases. GO has no current holdase term, because GO:0051082 was obsoleted. The worm hsp-16 reviews propose a holdase chaperone activity NTR, and the HSPB1 review now proposes the same NTR (its GO:0044183 rows are MODIFY to it). Until GO creates that term, the family-level function is the parent GO:0044183, and the holdase sense is described in prose. Atypical small HSPs. The 12-kDa sHSPs are a nematode-specific optional part that follows their gene reviews. HSP-12.3 forms tetramers and HSP-12.6 is monomeric; neither shows in vitro chaperone activity. Because hsp-12.6 is not stress-inducible, no heat-response process is asserted for it. Their link to HSF-1 runs through HSF-1/DAF-16 co-regulation of sHSP genes in reduced insulin signaling and longevity (PMID:12750521), not through acute heat induction. Relation to other modules. MODULE:bacterial_dnak_dnaj_refolding_cycle models the bacterial DnaK/DnaJ/GrpE Hsp70 cycle. Part 2 here is the eukaryotic cytosolic counterpart, with HSP110- and BAG-family NEFs in place of GrpE, inside a stress-induced transcriptional program, so the two modules do not duplicate each other. MODULE:cct_chaperonin_folding covers the CCT/TRiC chaperonin.
knowledge_gaps[0] · provenance
(0/1)knowledge_gaps[1].provenance[0] · reference_section_type
(0/1)✗ none found
No MODULE:heat_shock_response deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
13 gene-function check(s) reflected in core functions · 0 conflict(s) · 15 evidence or coverage gap(s) (28 comparison(s))
Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.
| Annoton | Participant | Function | Assessment |
|---|---|---|---|
| metazoan_hsf1_tf | HSF1 (human) UniProtKB:Q00613 Family Representative |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| metazoan_hsf1_tf | HSF-1 (worm) UniProtKB:G5EFT5 Family Representative |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 |
Function Unreviewed
No retained annotation or core molecular function supports this GO assertion. Missing or broader evidence is a coverage gap, not proof the activity is absent. |
| fungal_hsf1_tf | Hsf1 (budding yeast) UniProtKB:P10961 Family Representative |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp70_foldase | HSP-1 (worm Hsc70) UniProtKB:P09446 Family Representative |
ATP-dependent protein folding chaperone GO:0140662 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp70_foldase | HSP-70/C12C8.1 (worm, inducible) UniProtKB:O45246 Family Representative |
ATP-dependent protein folding chaperone GO:0140662 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp70_foldase | F44E5.4 (worm, inducible) UniProtKB:G5ECU5 Family Representative |
ATP-dependent protein folding chaperone GO:0140662 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp70_foldase | HSPA1A (human, inducible) UniProtKB:P0DMV8 Family Representative |
ATP-dependent protein folding chaperone GO:0140662 |
Function Unreviewed
No retained annotation or core molecular function supports this GO assertion. Missing or broader evidence is a coverage gap, not proof the activity is absent. |
| jdp_cochaperone | DNAJB1 (human) UniProtKB:P25685 Family Representative |
ATPase activator activity GO:0001671 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp110_nef | HSP-110 (worm) UniProtKB:Q05036 Family Representative |
adenyl-nucleotide exchange factor activity GO:0000774 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| bag_nef | BAG-1 (worm) UniProtKB:O44739 Family Representative |
adenyl-nucleotide exchange factor activity GO:0000774 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| bag_nef | BAG1 (human) UniProtKB:Q99933 Family Representative |
adenyl-nucleotide exchange factor activity GO:0000774 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp90_foldase | HSP-90/DAF-21 (worm) UniProtKB:Q18688 Family Representative |
ATP-dependent protein folding chaperone GO:0140662 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp90_foldase | HSP90AA1 (human) UniProtKB:P07900 Family Representative |
ATP-dependent protein folding chaperone GO:0140662 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| shsp_holdase_activity | HSP-16.1 (worm) UniProtKB:P34696 Family Representative |
protein folding chaperone (ATP-independent holdase) GO:0044183 |
Function Unreviewed
No retained annotation or core molecular function supports this GO assertion. Missing or broader evidence is a coverage gap, not proof the activity is absent. |
| shsp_holdase_activity | HSP-16.2 (worm) UniProtKB:P06582 Family Representative |
protein folding chaperone (ATP-independent holdase) GO:0044183 |
Function Unreviewed
No retained annotation or core molecular function supports this GO assertion. Missing or broader evidence is a coverage gap, not proof the activity is absent. |
| shsp_holdase_activity | HSP-16.41 (worm) UniProtKB:P06581 Family Representative |
protein folding chaperone (ATP-independent holdase) GO:0044183 |
Function Unreviewed
No retained annotation or core molecular function supports this GO assertion. Missing or broader evidence is a coverage gap, not proof the activity is absent. |
| shsp_holdase_activity | HSP-16.48 (worm) UniProtKB:P02513 Family Representative |
protein folding chaperone (ATP-independent holdase) GO:0044183 |
Function Unreviewed
No retained annotation or core molecular function supports this GO assertion. Missing or broader evidence is a coverage gap, not proof the activity is absent. |
| shsp_holdase_activity | HSPB1/Hsp27 (human) UniProtKB:P04792 Family Representative |
protein folding chaperone (ATP-independent holdase) GO:0044183 |
Review Disagreement
The review removes, modifies, or marks this term over-annotated and provides no retained/core support. Review the rationale; rejection of an evidence row alone is not a biological NOT. |
| hsp12_3_shsp | HSP-12.3 UniProtKB:Q20164 Gene |
heat shock protein binding GO:0031072 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| hsp12_6_shsp | HSP-12.6 UniProtKB:G5EE36 Gene |
identical protein binding GO:0042802 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| metazoan_hsf1_tf | Heat shock factor 1 (metazoan) PANTHER:PTHR10015 Family |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR10015. |
| fungal_hsf1_tf | Heat shock factor (fungal Hsf1) PANTHER:PTHR10015 Family |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR10015. |
| hsp70_foldase | Cytosolic Hsp70/Hsc70 chaperones PANTHER:PTHR19375 Family |
ATP-dependent protein folding chaperone GO:0140662 |
Family Function Unreviewed
Family review leaves GO:0140662 UNRESOLVED. Canonical Hsp70/DnaK folding activity remains positive, including direct denatured-luciferase reactivation evidence for yeast Ssa1. A universal grant across this heterogeneous family is not justified. The current term requires ATP-driven assistance to protein folding; HscA ATPase stimulation, client capture and cluster transfer do not alone establish that endpoint. E. coli HscA stabilizes disordered IscU and has model-client antiaggregation activity. The full PMID9852006 study separately reports failure to restore denatured-luciferase activity in the tested Hsc66 partner combinations, with a positive DnaK control. Together these observations make generic folding assignments over-annotated for the E. coli target without proving impossibility for every substrate or transferring a negative experiment to the Pseudomonas and Azotobacter homologs. Their folding endpoints remain unresolved. The negative Hsp110 judgment for HSPH1/Q92598 remains: it acts as a nucleotide-exchange factor and holdase rather than an independent ATP-driven folding chaperone. The exact former exception object is archived because live member exceptions cannot qualify an UNRESOLVED universal scope; no negative HscA exception, loss event or new broad ATPase grant is added. HSPA13 and other divergent proteins remain member-level questions. |
| jdp_cochaperone | Class B J-domain proteins (DNAJB1-type Hsp40) Family |
ATPase activator activity GO:0001671 |
Family Id Missing
The family has no identifier linking it to a curated family review. |
| hsp110_nef | HSP110/HSPH nucleotide-exchange factors PANTHER:PTHR45639 Family |
adenyl-nucleotide exchange factor activity GO:0000774 |
Family Function Unreviewed
Family review leaves GO:0000774 UNRESOLVED. HSPA4/Apg2 in SF6 supports nucleotide-exchange activity. HSPH1, LHS1/GRP170 and other Hsp110-related branches also have nucleotide-exchange evidence, so the HSPA4 branch is not the only applicable group. The complete boundary among the diverse family members remains unresolved. HSPA4 must be distinguished from conventional Hsp70 substrate-cycling proteins and ribosome-associated chaperones. Nucleotide exchange, substrate binding, ATP hydrolysis and membership in a particular folding complex are separate claims, and none follows solely from an Hsp70-family name. |
| bag_nef | BAG-domain co-chaperones (BAG1 type) PANTHER:PTHR12329 Family |
adenyl-nucleotide exchange factor activity GO:0000774 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR12329. |
| hsp90_foldase | Cytosolic HSP90 chaperones PANTHER:PTHR11528 Family |
ATP-dependent protein folding chaperone GO:0140662 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR11528. |
| shsp_holdase_activity | Canonical small heat shock proteins (alpha-crystallin domain) PANTHER:PTHR45640 Family |
protein folding chaperone (ATP-independent holdase) GO:0044183 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR45640. |
✓ every negative regulator described as feedback has an upstream edge closing the loop.
15 complete review(s) · 17 with deep research · 0 missing review · 3 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| bag-1 O44739 | ✓ | ✓ | ✓ |
| BAG1 Q99933 | ✓ | 37/38 | ✓ |
| DNAJB1 P25685 | ✓ | 64/70 | ✓ |
| F44E5.4 G5ECU5 | ✓ | ✓ | ✓ |
| hsf-1 G5EFT5 | ✓ | 60/61 | ✓ |
| HSF1 P10961 | ✓ | ✓ | ✓ |
| HSF1 Q00613 | ✓ | ✓ | ✗ |
| hsp-1 P09446 | ✓ | ✓ | ✓ |
| hsp-110 Q05036 | ✓ | ✓ | ✓ |
| hsp-12.3 Q20164 | ✓ | ✓ | ✓ |
| hsp-12.6 G5EE36 | ✓ | ✓ | ✓ |
| hsp-16.1 P34696 | ✓ | ✓ | ✓ |
| hsp-16.2 P06582 | ✓ | ✓ | ✓ |
| hsp-16.41 P06581 | ✓ | ✓ | ✓ |
| hsp-16.48 P02513 | ✓ | ✓ | ✓ |
| hsp-70 O45246 | ✓ | ✓ | ✓ |
| hsp-90 Q18688 | ✓ | ✓ | ✓ |
| HSP90AA1 P07900 | ✓ | 506/522 | ✗ |
| HSPA1A P0DMV8 | ✓ | 195/197 | ✓ |
| HSPB1 P04792 | ✓ | ✓ | ✗ |
HSF activation and HSE-dependent transcription (latent-monomer metazoan or constitutively trimeric yeast mode). The cytosolic chaperone network it induces: the Hsp70 foldase cycle with J-domain co-chaperones and HSP110- and BAG-family nucleotide-exchange factors, the HSP90 chaperone (also the HSF1 repressor in metazoa), small HSP holdases, and a nematode-specific HSF-1/DAF-16-co-regulated atypical sHSP branch.
HSF binds HSEs (continuous inverted nGAAn pentamers) as a trimer and activates RNA polymerase II transcription of chaperone genes. The lineages differ in how HSF is kept inactive and how stress activates it (variant set). In metazoans, HSF1 is a latent monomer that trimerizes when stress titrates away its HSP90/HSP70 repressors. In budding yeast, Hsf1 is constitutively trimeric and nuclear and drives essential basal chaperone expression. Heat shock concentrates HSF in nuclear stress granules in both human and worm cells.
Metazoan latent-monomer HSF1 (human; worm HSF-1 by family and pathway context) versus constitutively trimeric, nuclear fungal Hsf1 (budding yeast). Both are HSF family members (PTHR10015) that descend from the eukaryotic PAINT node PTN007416549.
In unstressed cells, HSF1 is an inert monomer, held by intramolecular leucine-zipper contacts and by HSP90- and HSP70-containing complexes. Proteotoxic stress releases it. HSF1 then homotrimerizes, gains HSE binding, accumulates in nuclear stress granules and activates HSP70, HSP90 and small HSP genes. The induced chaperones attenuate it again. Worm HSF-1 belongs here by family and by an early activation step that DDL-1/DDL-2 restrain under insulin/IGF-1-like signaling. Unlike human HSF1, worm HSF-1 is constitutively nuclear, and its trimerization switch is inferred rather than shown.
Stress-activated master transcription factor; a latent monomer that homotrimerizes to bind HSEs and induce chaperone genes.
Budding yeast Hsf1 is the single, essential HSF. It is constitutively trimeric and nuclear. Its essential function under all conditions is basal transcription of a compact set of chaperone genes; restoring basal Hsp70 (SSA2) and Hsp90 (HSC82) expression alone lets cells grow without Hsf1. Heat and proteotoxic stress raise its activity through phosphorylation and release from Hsp70/Hsp90 feedback, and it then drives chaperone induction for thermotolerance.
Constitutively trimeric, nuclear HSF whose essential output is basal Hsp70/Hsp90 expression; stress raises its activity further.
Cytosolic Hsp70s bind non-native clients and refold them through ATP hydrolysis-coupled cycles. Constitutive Hsc70 (worm HSP-1) is abundant without stress and modestly heat-inducible. The inducible HSP70s (worm HSP-70/C12C8.1 and F44E5.4; human HSPA1A) are strongly HSF-dependent. J-domain co-chaperones (human DNAJB1) deliver clients and stimulate the Hsp70 ATPase. HSP110-family (worm HSP-110) and BAG-domain (worm BAG-1, human BAG1) nucleotide-exchange factors release ADP to reset the cycle.
ATP-driven client refolding by constitutive Hsc70 and the strongly heat-inducible HSP70s.
Binds non-native clients, delivers them to Hsp70 and stimulates its ATPase through the J-domain.
HSP110-family nucleotide-exchange factor that releases ADP from Hsp70; also limits aggregation of misfolding-prone proteins.
BAG-domain co-chaperone that stimulates the Hsp70 ATPase cycle and client release; tunes rather than drives folding, and can antagonize it in excess.
Cytosolic HSP90 is an ATP-dependent clamp chaperone. Co-chaperones regulate its cycle, which completes the maturation and stabilization of metastable clients such as kinases, steroid receptors and transcription factors. HSF induces it through HSEs: worm HSP-90 (historical mutant name DAF-21), the only cytosolic HSP90 in C. elegans, is induced through distal HSEs bound by HSF-1, with a PQM-1 contribution. In human cells, HSP90 is also the main repressor of HSF1, which closes the negative feedback loop of the response.
Heat-induced chaperone for client maturation and maintenance; in metazoa also binds and represses HSF1.
Canonical small heat shock proteins are alpha-crystallin-domain proteins that form dynamic oligomers. Without ATP, they bind heat-denatured proteins and keep them soluble and refolding-competent; the ATP-dependent chaperones later refold these clients. They do not refold clients themselves. The four worm hsp-16 genes (hsp-16.1, hsp-16.2, hsp-16.41, hsp-16.48) are arranged as divergently transcribed pairs sharing intergenic HSEs, are silent without stress and strictly HSF-1-dependent for heat induction. Human HSPB1 (Hsp27) is the vertebrate exemplar. GO has no current holdase term (see notes).
Heat-inducible sHSP holdase that prevents aggregation of denatured proteins and hands them on for ATP-dependent refolding; does not refold them itself.
The four 12-kDa sHSPs of C. elegans are essentially bare alpha-crystallin domains with very short N-terminal regions and no C-terminal tail. HSP-12.3 forms tetramers (with HSP-12.2) and HSP-12.6 is monomeric; neither has in vitro chaperone activity, and hsp-12.6 is not stress-inducible. HSF-1 and DAF-16 jointly activate sHSP genes when insulin/IGF-1 signaling is reduced, and this is how these genes connect to HSF-1. The branch contributes to longevity and delays polyglutamine aggregation. No holdase or heat-response function is asserted for HSP-12.6.
Atypical sHSP that associates with HSP-12.2 into tetramers but lacks in vitro chaperone activity.
Non-inducible, non-chaperone sHSP; included as an HSF-1/DAF-16 longevity-branch sHSP, not as an acute heat-response effector.