Canonical Hedgehog/Smoothened signaling pathway module

A compact vertebrate Hedgehog signaling module. Secreted Hedgehog ligand binds Patched, relieving Patched-mediated inhibition of Smoothened. Activated Smoothened accumulates in the primary cilium and shifts GLI transcription factors from repressor processing toward activator output. The module is grounded in GO:0007224, with curated UniProt exemplars for ligand, receptor, transducer, inhibitor, and GLI output; PTN ancestry is recorded only for Smoothened and SUFU, where the local PAINT cache has matching IBD seed rows.

MODULE:hedgehog_signalingDRAFTSignaling Pathwaymodules/hedgehog_signaling.yaml
smoothened signaling pathwayGO:0007224
GO:0007224
smoothened signaling pathway
The module is grounded in the GO biological process term for Hedgehog/Smoothened signaling.

SHH, PTCH1, and GLI1 are included as curated human exemplars, but no ancestral_nodes are asserted for them because their accessions did not resolve to matching IBD seed rows in the local interpro/panther cache.

4Nodes
3Parts
0Variant Sets
0Variants
5Annotons
2Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:hedgehog_signaling deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (0/5 grounded genes reviewed)

0 complete review(s) · 0 with deep research · 5 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
GLI1 P08151
PTCH1 Q13635
SHH Q15465
SMO Q99835
SUFU Q9UMX1

Details

Context
plasma membraneGO:0005886 primary ciliumGO:0005929 nucleusGO:0005634
Canonical Hedgehog/Smoothened signaling pathwaySignaling Pathwayhedgehog_signaling
smoothened signaling pathwayGO:0007224
Context
plasma membraneGO:0005886 primary ciliumGO:0005929 nucleusGO:0005634

Connections

Hedgehog-bound Patched no longer suppresses Smoothened.
Activated Smoothened shifts the SUFU/GLI module toward activator output.
Part 1: Hedgehog ligand reception
Hedgehog binding relieves Patched inhibitionRegulatory Stephedgehog_ligand_reception

Processed Hedgehog ligand binds the Patched receptor, relieving Patched-mediated suppression of Smoothened and licensing ciliary Smoothened activation.

Annotons

Hedgehog ligand
hedgehog_ligand
Participant: Family: Hedgehog ligand family
Family:
Hedgehog ligand family
Representative Members: SHHUniProtKB:Q15465

Function

patched bindingGO:0005113
Targets: Patched receptor

Secreted morphogen that initiates the pathway by binding Patched.

Patched receptor
patched_receptor
Participant: Family: Patched receptors
Family:
Patched receptors
Representative Members: PTCH1UniProtKB:Q13635

Twelve-pass membrane receptor that inhibits Smoothened when ligand is absent.

Part 2: Smoothened activation
Smoothened ciliary signal transductionRegulatory Stepsmoothened_activation

Once Patched repression is relieved, Smoothened becomes active and accumulates in the ciliary signaling compartment, promoting GLI activator formation.

Annotons

Smoothened transducer
smoothened_transducer
Participant: Family: Smoothened/Frizzled-family receptors
Family:
Smoothened/Frizzled-family receptorsPANTHER:PTHR11309
Representative Members: SMOUniProtKB:Q99835

Processes

smoothened signaling pathwayGO:0007224

Locations

plasma membraneGO:0005886

GPCR-like transducer that carries the ligand-receptor state to the GLI regulatory module.

Part 3: GLI transcriptional control
SUFU/GLI transcription factor regulationRegulatory Stepgli_transcriptional_control

In the off state, SUFU restrains GLI transcription factors and favors repressor processing. Smoothened activation relieves this constraint, allowing GLI activators to drive Hedgehog target genes.

Annotons

SUFU negative regulator
sufu_inhibitor
Participant: Family: Suppressor of fused family
Family:
Suppressor of fused familyPANTHER:PTHR10928
Representative Members: SUFUUniProtKB:Q9UMX1

Negative regulator that restrains GLI factors in the pathway-off state.

GLI transcription factor output
gli_output
Participant: Family: GLI zinc-finger transcription factors
Family:
GLI zinc-finger transcription factors
Representative Members: GLI1UniProtKB:P08151

Locations

nucleusGO:0005634

Transcriptional effector converting Smoothened activity into Hedgehog target-gene expression.