Heme degradation (heme -> biliverdin -> bilirubin)

Heme (iron-protoporphyrin IX), released chiefly from senescent-erythrocyte hemoglobin, is both an essential cofactor and, when free, a pro-oxidant; its controlled catabolism recovers iron, produces the signalling gas carbon monoxide, and generates the antioxidant bile pigments. Degradation proceeds in two enzymatic steps. First, heme oxygenase — the highly inducible, cytoprotective HMOX1 (HO-1/HSP32) and the constitutive HMOX2 (HO-2, an oxygen sensor in brain and vasculature) — uses molecular O2 and electrons from NADPH--cytochrome P450 reductase to oxidatively cleave the alpha-methene bridge of heme, releasing biliverdin IX-alpha, carbon monoxide (CO) and free ferrous iron (Fe2+); this is the rate-limiting step, and the iron is recaptured by ferritin while CO acts as a vasodilatory/anti-inflammatory messenger. Second, biliverdin reductase reduces the green biliverdin to the yellow, lipophilic, potently antioxidant bilirubin: the cytosolic NAD(P)H-dependent BLVRA acts on the major IX-alpha isomer (and additionally moonlights as a signalling kinase/scaffold), while the broad-specificity NADPH flavin reductase BLVRB reduces the IX-beta isomer (prominent in fetal heme catabolism) as well as flavins and other substrates. Bilirubin is subsequently glucuronidated (UGT1A1) for biliary excretion. Inherited defects cause severe systemic inflammation with hemolysis (HMOX1 deficiency) and green jaundice / hyperbiliverdinemia (BLVRA deficiency).

MODULE:heme_degradationDRAFTMetabolic Pathwaymodules/heme_degradation.yaml
heme catabolic processGO:0042167 heme oxidationGO:0006788
GO:0042167
heme catabolic process
HMOX1/HMOX2 and BLVRA/BLVRB together carry out heme catabolism (GO:0042167).
GO:0006788
heme oxidation
HMOX1/HMOX2 oxidise heme to biliverdin + CO + Fe2+ (GO:0006788).
file:human/HMOX1/HMOX1-ai-review.yaml
HMOX1 gene review (human)
The inducible heme->biliverdin+CO+Fe step (UniProtKB:P09601, GO:0004392) matches the completed human HMOX1 review.
file:human/HMOX2/HMOX2-ai-review.yaml
HMOX2 gene review (human)
The constitutive heme->biliverdin+CO+Fe step (UniProtKB:P30519, GO:0004392) matches the completed human HMOX2 review.
file:human/BLVRA/BLVRA-ai-review.yaml
BLVRA gene review (human)
The biliverdin IX-alpha -> bilirubin step (UniProtKB:P53004, GO:0004074) matches the completed human BLVRA review.
file:human/BLVRB/BLVRB-ai-review.yaml
BLVRB gene review (human)
The biliverdin IX-beta / flavin reduction step (UniProtKB:P30043, GO:0004074) matches the completed human BLVRB review.
4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
2Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:heme_degradation deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (4/4 grounded genes reviewed)

4 complete review(s) · 0 with deep research · 0 missing review · 4 reviewed but lacking deep research

Gene Review Complete Deep research
BLVRA P53004
BLVRB P30043
HMOX1 P09601
HMOX2 P30519

Details

Context
endoplasmic reticulum membraneGO:0005789 cytosolGO:0005829
Heme degradation (heme -> biliverdin -> bilirubin)Metabolic Pathwayheme_degradation
heme catabolic processGO:0042167 heme oxidationGO:0006788
Context
endoplasmic reticulum membraneGO:0005789 cytosolGO:0005829

Heme degradation (GO:0042167 heme catabolic + GO:0006788 heme oxidation), grounded to four completed human gene reviews. STEP 1 (ER membrane, rate-limiting): heme oxygenases HMOX1 (P09601, inducible/NRF2, cytoprotective; deficiency = systemic inflammation/hemolysis) + HMOX2 (P30519, constitutive, O2 sensor) share PTHR10720, GO:0004392 — cleave heme with O2 + NADPH-cytochrome-P450-reductase electrons to biliverdin IX-alpha + CO + Fe2+ (CO = signalling gas, Fe -> ferritin). STEP 2 (cytosol): biliverdin reductases, both GO:0004074 but DIFFERENT families/isomer specificity — BLVRA (P53004 PTHR43377, IX-alpha, dual NADH/NADPH; also a moonlighting Ser/Thr/Tyr kinase-scaffold GO:0004674) and BLVRB (P30043 PTHR43355, the broad NADPH flavin reductase, prefers IX-beta / fetal, also reduces FMN/FAD/riboflavin/methemoglobin). Bilirubin is a potent antioxidant, then glucuronidated by UGT1A1 (curated separately) for excretion. GO term ids/labels verified against the local go.db. Disorders: HMOX1 deficiency; BLVRA green jaundice / hyperbiliverdinemia; BLVRB links to thrombopoiesis.

Connections

The biliverdin IX-alpha produced by heme oxygenase is reduced to bilirubin IX-alpha by BLVRA.
The minor biliverdin IX-beta isomer (prominent in fetal heme catabolism) is reduced by the flavin/biliverdin reductase BLVRB.
Part 1: heme oxidation to biliverdin (rate-limiting)
Heme oxygenase (HMOX1/HMOX2)Reactionheme_oxidation

Annotons

HMOX1/HMOX2: heme oxygenase
hmox_activity
Participant: Family: heme oxygenase family
Family:
heme oxygenase familyPANTHER:PTHR10720
Representative Members: HMOX1 (human)UniProtKB:P09601 HMOX2 (human)UniProtKB:P30519

Function

heme oxygenase (decyclizing) activityGO:0004392
Substrates: heme (protoporphyrin IX-Fe) O2 (electrons from NADPH--cytochrome P450 reductase)
Products: biliverdin IX-alpha carbon monoxide (CO) + Fe2+

Locations

endoplasmic reticulum membraneGO:0005789

Oxidatively cleave heme to biliverdin IX-alpha + CO + Fe2+.

Part 2: biliverdin IX-alpha reduction to bilirubin
Biliverdin reductase A (BLVRA)Reactionbiliverdin_alpha_reduction

Annotons

BLVRA: biliverdin reductase A
blvra_activity
Participant: Family: BLVRA / biliverdin reductase A family
Family:
BLVRA / biliverdin reductase A familyPANTHER:PTHR43377
Representative Members: BLVRA (human)UniProtKB:P53004

Function

biliverdin reductase [NAD(P)H] activityGO:0004074
Substrates: biliverdin IX-alpha NAD(P)H
Products: bilirubin IX-alpha (antioxidant) NAD(P)+

Locations

cytosolGO:0005829

Reduce biliverdin IX-alpha to bilirubin IX-alpha (main isomer).

Part 3: biliverdin IX-beta / flavin reduction
Biliverdin reductase B / flavin reductase (BLVRB)Reactionbiliverdin_beta_reduction

Annotons

BLVRB: biliverdin reductase B (flavin reductase)
blvrb_activity
Participant: Family: BLVRB / flavin reductase (NADPH) family
Family:
BLVRB / flavin reductase (NADPH) familyPANTHER:PTHR43355
Representative Members: BLVRB (human)UniProtKB:P30043

Function

biliverdin reductase [NAD(P)H] activityGO:0004074
Substrates: biliverdin IX-beta (and flavins FMN/FAD/riboflavin) NADPH
Products: bilirubin IX-beta (or reduced flavin) NADP+

Locations

cytosolGO:0005829

Reduce biliverdin IX-beta (fetal isomer) and flavins.