Triacylglycerol synthesis for lipid droplet formation

Lipid droplets form in the endoplasmic reticulum membrane when neutral lipids, chiefly triacylglycerol and sterol esters, are made between the two leaflets, coalesce into a lens and bud toward the cytosol as an oil core covered by a phospholipid monolayer. The committed step of triacylglycerol storage is the acylation of diacylglycerol, catalysed in eukaryotes by two unrelated acyl-CoA-dependent enzyme families, DGAT1 and DGAT2, either of which can supply a droplet. This module is the eukaryote-wide core of that step, written so that it can be evaluated in any genome.

MODULE:lipid_droplet_neutral_lipid_storageDRAFTCONCRETEBiological Processmodules/lipid_droplet_neutral_lipid_storage.yaml
triglyceride biosynthetic processGO:0019432 lipid droplet formationGO:0140042

Eukaryote-wide scope: PAINT places the DGAT1 and DGAT2 nodes cited here at Eukaryota (taxon:2759) with F:GO:0004144; each node is shown to be an ancestor of the human protein by its IBA rows or its IBD seeds. Read as a satisfiability rule, a genome needs at least one of the two DGAT families (a ONE_OR_MORE realizer set). FIT proteins are optional (see that part). Molecular functions come from the human DGAT1 and DGAT2 reviews, and for FIT from the node's F IBD. Selector caveats are on each family: both DGAT variants use the subfamilies their family reviews allow and may miss other lineages', and no yeast DGAT1 is listed. Not modelled: seipin, which organizes droplet nucleation sites but whose human protein (BSCL2) has no local PANTHER entry; the acyl-CoA-independent PDAT route (yeast Lro1, fission yeast Plh1, plant PDAT1), which has no human member; and the perilipins and other surface proteins, which are lineage-specific. The sterol acyltransferases (Are1/Are2, SOAT1/SOAT2) make the sterol-ester half of the droplet core; they share PTHR10408 with DGAT1 and are excluded from it here, so the rule tests only triacylglycerol synthesis. The upstream glycerolipid pathway is described in triacylglycerol_biosynthesis.

5Nodes
2Parts
1Variant Sets
2Variants
3Annotons
1Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:lipid_droplet_neutral_lipid_storage deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

5 gene-function check(s) reflected in core functions · 0 conflict(s) · 4 evidence or coverage gap(s) (15 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
dgat1_mboat DGAT1 (human)
UniProtKB:O75907
Family Representative
diacylglycerol O-acyltransferase activity
GO:0004144
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
dgat1_mboat DGAT1-1 (rice)
UniProtKB:Q5I396
Family Representative
diacylglycerol O-acyltransferase activity
GO:0004144
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
dgat1_mboat DGAT1A (soybean)
UniProtKB:Q5GKZ7
Family Representative
diacylglycerol O-acyltransferase activity
GO:0004144
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
dgat2_family DGAT2 (human)
UniProtKB:Q96PD7
Family Representative
diacylglycerol O-acyltransferase activity
GO:0004144
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
dgat2_family DGA1 (budding yeast)
UniProtKB:Q08650
Family Representative
diacylglycerol O-acyltransferase activity
GO:0004144
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
dgat2_family DGAT2 (Arabidopsis)
UniProtKB:Q9ASU1
Family Representative
diacylglycerol O-acyltransferase activity
GO:0004144
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
dgat2_family dga1 (fission yeast)
UniProtKB:O74850
Family Representative
diacylglycerol O-acyltransferase activity
GO:0004144
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
fit_protein FITM2 (human)
UniProtKB:Q8N6M3
Family Representative
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
dgat1_mboat DGAT1 subfamilies
PANTHER:PTHR10408:SF7
Family
diacylglycerol O-acyltransferase activity
GO:0004144
Family Supported
Family review supports GO:0004144 for PANTHER:PTHR10408:SF7. DGAT1 subfamilies only (SF7, SF12, SF22). triacylglycerol_biosynthesis selects the base family for DGAT1, which also takes in the sterol acyltransferases.
dgat1_mboat DGAT1 subfamilies
PANTHER:PTHR10408:SF12
Family
diacylglycerol O-acyltransferase activity
GO:0004144
Family Supported
Family review supports GO:0004144 for PANTHER:PTHR10408:SF12. DGAT1 subfamilies only (SF7, SF12, SF22). triacylglycerol_biosynthesis selects the base family for DGAT1, which also takes in the sterol acyltransferases.
dgat1_mboat DGAT1 subfamilies
PANTHER:PTHR10408:SF22
Family
diacylglycerol O-acyltransferase activity
GO:0004144
Family Supported
Family review supports GO:0004144 for PANTHER:PTHR10408:SF22. DGAT1 subfamilies only (SF7, SF12, SF22). triacylglycerol_biosynthesis selects the base family for DGAT1, which also takes in the sterol acyltransferases.
dgat2_family DGAT2 subfamilies
PANTHER:PTHR12317:SF14
Family
diacylglycerol O-acyltransferase activity
GO:0004144
Family Supported
Family review supports GO:0004144 for PANTHER:PTHR12317:SF14. DGAT2 subfamilies; triacylglycerol_biosynthesis selects the base family, which also takes in MOGAT and AWAT.
dgat2_family DGAT2 subfamilies
PANTHER:PTHR12317:SF0
Family
diacylglycerol O-acyltransferase activity
GO:0004144
Family Supported
Family review supports GO:0004144 for PANTHER:PTHR12317:SF0. DGAT2 subfamilies; triacylglycerol_biosynthesis selects the base family, which also takes in MOGAT and AWAT.
dgat2_family DGAT2 subfamilies
PANTHER:PTHR12317:SF63
Family
diacylglycerol O-acyltransferase activity
GO:0004144
Family Supported
Family review supports GO:0004144 for PANTHER:PTHR12317:SF63. DGAT2 subfamilies; triacylglycerol_biosynthesis selects the base family, which also takes in MOGAT and AWAT.
fit_protein FIT family
PANTHER:PTHR23129
Family
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
Family Review Missing
No supported structured family review is available for PANTHER:PTHR23129.

Gene-review completeness (5/8 grounded genes reviewed)

4 complete review(s) · 1 with deep research · 3 missing review · 4 reviewed but lacking deep research

Gene Review Complete Deep research
dga1 O74850 ✓ ✓ ✗
DGA1 Q08650 ✓ ✓ ✓
DGAT1 O75907 ✓ ✓ ✗
DGAT2 Q96PD7 ✓ ✓ ✗
FITM2 Q8N6M3 ✓ 34/35 ✗
DGAT1A (soybean) Q5GKZ7 ✗ — —
DGAT1-1 (rice) Q5I396 ✗ — —
DGAT2 (Arabidopsis) Q9ASU1 ✗ — —

Details

Context
EukaryotaNCBITaxon:2759
Triacylglycerol synthesis for lipid droplet formationBiological Processlipid_droplet_neutral_lipid_storage
triglyceride biosynthetic processGO:0019432 lipid droplet formationGO:0140042
Context
EukaryotaNCBITaxon:2759

Connections

dag_acylation -> fit_budding Provides Input For
Triacylglycerol accumulating in the ER bilayer buds into a droplet with FIT proteins.
Part 1: neutral lipid synthesis
Acyl-CoA:diacylglycerol acyltransferaseReactiondag_acylation
Variant set: DGAT enzyme family by enzyme family [Realizer] (One Or More)

DGAT1 and DGAT2 are unrelated families with the same activity; many eukaryotes have both, yeasts only DGAT2, hence ONE_OR_MORE.

DGAT1 (MBOAT family)Reactiondgat1_variant

Annotons

DGAT1 (MBOAT-family) diacylglycerol acyltransferase
dgat1_mboat
Participant: Family: DGAT1 subfamilies
Family:
DGAT1 subfamilies Three subfamilies of the MBOAT sterol O-acyltransferase family PTHR10408, the ones the PTHR10408 family review allows diacylglycerol O-acyltransferase activity for: PTHR10408:SF7 (Arabidopsis, Dictyostelium and human DGAT1), PTHR10408:SF12 (rice DGAT1-1, Q5I396) and PTHR10408:SF22 (soybean DGAT1A and DGAT1B, Q5GKZ7 and I1MSF2). The sterol acyltransferases (human SOAT1/SOAT2, yeast Are1/Are2) in the same family are excluded. No yeast member is listed: budding and fission yeast make triacylglycerol with Dga1 (the DGAT2 variant) and the acyl-CoA-independent Lro1/Plh1.
Representative Members: DGAT1 (human)UniProtKB:O75907 DGAT1-1 (rice)UniProtKB:Q5I396 DGAT1A (soybean)UniProtKB:Q5GKZ7

Function

diacylglycerol O-acyltransferase activityGO:0004144

Locations

endoplasmic reticulum membraneGO:0005789

Multipass ER-membrane acyltransferase that esterifies diacylglycerol with acyl-CoA to make triacylglycerol in the ER bilayer.

file:genes/human/DGAT1/DGAT1-ai-review.yaml
Reviewed core function of human DGAT1: diacylglycerol O-acyltransferase activity.
file:interpro/panther/PTHR10408/PTHR10408-paint.tsv
PAINT ancestral-node rows for this step's family.
DGAT2 familyReactiondgat2_variant

Annotons

DGAT2-family diacylglycerol acyltransferase
dgat2_family
Participant: Family: DGAT2 subfamilies
Family:
DGAT2 subfamilies Three subfamilies of PTHR12317 together cover the DGAT2 enzymes: SF14 (vertebrate DGAT2), SF0 (budding yeast, fission yeast and Dictyostelium Dga1) and SF63 (Arabidopsis DGAT2). The rest of the family, the monoacylglycerol acyltransferases MOGAT1-3 and the wax-ester synthases AWAT1/2, is excluded, because the PTHR12317 family review allows diacylglycerol O-acyltransferase activity at subfamily level only. The family review narrows the PAINT node rather than restating it: the F:GO:0004144 IBD at PTN000268127 is seeded partly from human MOGAT3 (Q86VF5, PTHR12317:SF36) and DGAT2L6 (Q6ZPD8, PTHR12317:SF19), members of subfamilies this selector excludes. An IRD at PTN000268139 (taxon:32523, Tetrapoda) negates F:GO:0004144 and P:GO:0019432 below PTN000268127, which fits that subfamily-level restriction; which tetrapod members it covers has not been checked. Other lineages' DGAT2 subfamilies are not listed, so their genomes may fail this variant for want of a selector.
Representative Members: DGAT2 (human)UniProtKB:Q96PD7 DGA1 (budding yeast)UniProtKB:Q08650 DGAT2 (Arabidopsis)UniProtKB:Q9ASU1 dga1 (fission yeast)UniProtKB:O74850

Function

diacylglycerol O-acyltransferase activityGO:0004144

Locations

endoplasmic reticulum membraneGO:0005789

ER-membrane acyltransferase, also found on lipid droplets, that esterifies diacylglycerol with acyl-CoA to make triacylglycerol.

file:genes/human/DGAT2/DGAT2-ai-review.yaml
Reviewed core function of human DGAT2: diacylglycerol O-acyltransferase activity.
file:interpro/panther/PTHR12317/PTHR12317-paint.tsv
PAINT ancestral-node rows for this step's family.
Part 2: droplet budding (optional)
FIT-protein-assisted droplet buddingMolecular Functionfit_budding

Optional because the FIT family is not shown to be eukaryote-wide: interpro/panther/PTHR23129/PTHR23129-entries.csv lists yeast and animal members but no Arabidopsis or Dictyostelium member, and the PAINT node is at Opisthokonta (taxon:33154).

Annotons

FIT lipid droplet budding protein
fit_protein
Participant: Family: FIT family
Family:
FIT familyPANTHER:PTHR23129
Representative Members: FITM2 (human)UniProtKB:Q8N6M3

Function

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesGO:0016818 The F IBD at PTN000565881. The human FITM2 review records acyl-CoA diphosphatase activity (GO:0010945), and PAINT places that narrower term at PTN002751040 (taxon:117571, Euteleostomi), a descendant of this opisthokont node (inferred: both are ancestors of human FITM2, and Euteleostomi nests within Opisthokonta) whose only seed is human FITM2. The family also holds FITM1, whose diphosphatase activity is not established, so the family-level selector carries the node's parent term.

Locations

endoplasmic reticulum membraneGO:0005789

ER-membrane protein needed for lipid droplets to bud from the ER toward the cytosol; human FITM2 has been shown to cleave the diphosphate bond of acyl-CoA.

GO_REF:0000033
PAINT IBD F:GO:0016818 at PTN000565881 in PTHR23129.
file:interpro/panther/PTHR23129/PTHR23129-paint.tsv
PAINT ancestral-node rows for this step's family.