Lysosomal glycogen degradation (acid alpha-glucosidase) — Pompe disease (GSD II)

Lysosomal glycogen degradation is the acid-hydrolase route for breaking down the glycogen that is delivered to lysosomes by autophagy (glycophagy), complementing the cytosolic glycogenolysis pathway (phosphorylase/debranching). Its single enzyme is lysosomal acid alpha-glucosidase (GAA, acid maltase), a glycoside-hydrolase-family-31 enzyme that works at the acidic pH of the lysosomal lumen to completely hydrolyse glycogen to free glucose, cleaving the alpha-1,4-glucosidic bonds (and, more slowly, the alpha-1,6 branch linkages). GAA is synthesised as a precursor, N-glycosylated and mannose-6-phosphate-tagged for delivery to the lysosome, and proteolytically matured to its active forms. Because this route continuously clears autophagocytosed glycogen, its loss is not compensated by cytosolic glycogenolysis: inherited GAA deficiency causes Pompe disease (glycogen storage disease type II) — lysosomal glycogen accumulation producing hypertrophic cardiomyopathy and profound hypotonia in the infantile-onset form, and a progressive limb-girdle and respiratory myopathy in late-onset disease. It is one of the few glycogenoses treatable by enzyme replacement therapy (recombinant human GAA, e.g. alglucosidase/avalglucosidase alfa).

MODULE:lysosomal_glycogen_degradationDRAFTMetabolic Pathwaymodules/lysosomal_glycogen_degradation.yaml
glycogen catabolic processGO:0005980
GO:0005980
glycogen catabolic process
The module is grounded in the GO glycogen catabolic process (GO:0005980), specifically the lysosomal/autophagic route carried out by acid alpha-glucosidase.
Reactome:R-HSA-9036727
GAA hydrolyzes lysosomal glycogen
The reaction follows the human Reactome reaction R-HSA-9036727 (GAA hydrolyzes lysosomal glycogen).
file:human/GAA/GAA-ai-review.yaml
GAA gene review (human)
The lysosomal acid alpha-glucosidase step (UniProtKB:P10253, GO:0004558) matches the completed human GAA review.
2Nodes
1Parts
0Variant Sets
0Variants
1Annotons
0Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:lysosomal_glycogen_degradation deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (1/1 grounded genes reviewed)

1 complete review(s) · 0 with deep research · 0 missing review · 1 reviewed but lacking deep research

Gene Review Complete Deep research
GAA P10253

Details

Context
lysosomal lumenGO:0043202
Lysosomal glycogen degradationMetabolic Pathwaylysosomal_glycogen_degradation
glycogen catabolic processGO:0005980
Context
lysosomal lumenGO:0043202

Single-enzyme lysosomal glycogen catabolism grounded to human GAA (UniProtKB:P10253, GO:0004558 alpha-1,4-glucosidase activity, EC 3.2.1.20). The GO molecular-function term was taken from the human GOA record; the Reactome reaction id and title were verified against the local reactome cache. The enzyme uses a PANTHER family selector (PTHR22762, glycoside hydrolase family 31 alpha-glucosidases) with human GAA as the representative member. This lysosomal/autophagic route is complementary to, and not redundant with, the cytosolic glycogenolysis module (phosphorylase PYGL/PYGM, AGL debranching, PGM1): GAA loss cannot be compensated by cytosolic glycogenolysis, hence Pompe disease. GAA also has a slower alpha-1,6 (glucan-1,6-alpha-glucosidase, GO:0043896) activity and is not a physiological intestinal sucrase/maltase (that is SI/MGAM). Disorder: GAA -> Pompe disease / glycogen storage disease type II (infantile cardiomyopathy; late-onset limb-girdle/respiratory myopathy).

Part 1: acid hydrolysis of lysosomal glycogen to glucose
glycogen + n H2O to n D-glucose (acidic lysosomal pH)Reactiongaa_step

Annotons

GAA: lysosomal acid alpha-glucosidase (acid maltase)
gaa_activity
Participant: Family: Glycoside hydrolase family 31 alpha-glucosidase (GAA)
Family:
Glycoside hydrolase family 31 alpha-glucosidase (GAA)PANTHER:PTHR22762
Representative Members: GAA (human)UniProtKB:P10253

Function

alpha-1,4-glucosidase activityGO:0004558
Substrates: glycogen (alpha-1,4 and alpha-1,6 linkages) water
Products: D-glucose

Locations

lysosomal lumenGO:0043202

Mannose-6-phosphate-targeted, proteolytically matured GH31 acid hydrolase that completely degrades autophagocytosed lysosomal glycogen to glucose. Deficiency causes Pompe disease (GSD II); treatable by enzyme replacement therapy.