Mannose 6-phosphate tagging of lysosomal hydrolasesBiological Processmannose_6_phosphate_lysosomal_targeting
Grounded to the completed human reviews of GNPTAB (UniProtKB:Q3T906, GO:0003976) and LYSET (Q8N6I4). PANTHER subfamily ids are those in each representative's UniProt cross-references, with labels copied from interpro/panther/panther.obo. This module deliberately covers only the tagging (phosphotransferase) stage because the remaining members have no AIGR gene review yet: GNPTG (gamma subunit of the phosphotransferase; MLIII gamma), NAGPA (uncovering enzyme in the trans-Golgi network that removes the covering GlcNAc to expose M6P), and the M6P receptors M6PR (cation-dependent) and IGF2R (cation-independent) that sort tagged hydrolases from the TGN to endosomes. When those reviews exist they should be added as an uncovering part and a receptor sorting part. Site-1 protease (MBTPS1), which activates the alpha/beta precursor, is upstream activation context. Disorders: GNPTAB (mucolipidosis II alpha/beta, mucolipidosis III alpha/beta), GNPTG (mucolipidosis III gamma), LYSET (mucolipidosis-like lysosomal storage disorder).
Connections
LYSET is required for GlcNAc-1-phosphotransferase stability, processing and Golgi retention, and hence for M6P tagging.
Part 1: GlcNAc-1-phosphate transfer to lysosomal hydrolase N-glycans
UDP-GlcNAc + lysosomal-enzyme high-mannose glycan to UMP + GlcNAc-1-P-mannose glycanReactiongnptab_step
Annotons
GNPTAB: GlcNAc-1-phosphotransferase alpha/beta subunits
gnptab_activity
Participant: Family: GlcNAc-1-phosphotransferase subunits alpha/beta
Function
UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activityGO:0003976
Substrates:
UDP-N-acetylglucosamine
high-mannose N-glycan of a lysosomal hydrolase
Products:
N-acetylglucosamine-1-phospho-mannose N-glycan
UMP
Processes
Locations
Catalytic core of the alpha2beta2gamma2 complex; the alpha/beta precursor is activated by site-1 protease cleavage. Substrate recognition relies on a protein determinant of the hydrolases, with the GNPTG gamma subunit enhancing phosphorylation of a subset of them.
Part 2: Golgi retention and stabilisation of the phosphotransferase
LYSET binds and retains GlcNAc-1-phosphotransferase in the GolgiRegulatory Steplyset_step
Annotons
LYSET (TMEM251): lysosomal enzyme trafficking factor
lyset_role
Participant: Family: Lysosomal enzyme trafficking factor
Processes
Locations
Small Golgi membrane protein that binds GNPTAB, stabilising it and supporting its site-1 protease cleavage, activity and Golgi retention; without LYSET the complex is lost to lysosomes and hydrolases are secreted. No specific molecular-function term is asserted (the LYSET review records none).