Function
Activates homoserine to O-succinyl-L-homoserine.
De novo biosynthesis of L-methionine from L-homoserine through three ordered stages: homoserine activation, sulfur incorporation to form L-homocysteine, and methylation of L-homocysteine. Bacteria can activate homoserine with an acetyl or succinyl group, incorporate sulfur through two-step trans-sulfuration or one-step direct sulfhydrylation, and complete the pathway with a cobalamin-independent or cobalamin-dependent methionine synthase. Substrate-matched alternatives are retained explicitly because enzyme-family membership alone does not reliably distinguish acetyl from succinyl chemistry or forward biosynthetic from related PLP-dependent lyase reactions.
The boundary begins with L-homoserine and ends with L-methionine. Upstream aspartate-family synthesis of homoserine, sulfur assimilation, cobalamin supply, methionine salvage, the methionine/SAM cycle, and transcriptional or riboswitch regulation are outside the module. PANTHER terms orient exact exemplars but do not override experimentally established substrate specificity. Family identifiers are omitted where the locally available family does not distinguish the leaf chemistry. No PTN is asserted because an appropriate ancestral function-bearing node has not been established locally for every route.
All recommended fields populated.
✓ present
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.
3 complete review(s) · 3 with deep research · 6 missing review · 0 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| metH Q88KB5 | ✓ | ✓ | ✓ |
| metXS Q88CT3 | ✓ | ✓ | ✓ |
| metZ Q88LD4 | ✓ | ✓ | ✓ |
| MetB (Escherichia coli K-12) P00935 | ✗ | — | — |
| MetC (Escherichia coli K-12) P06721 | ✗ | — | — |
| MetH (Escherichia coli K-12) P13009 | ✗ | — | — |
| MetE (Escherichia coli K-12) P25665 | ✗ | — | — |
| MetX (Mycobacterium tuberculosis) P9WJY9 | ✗ | — | — |
| MetY (Corynebacterium glutamicum) Q79VI4 | ✗ | — | — |
The module records biochemical alternatives, not universal gene-name requirements. Homoserine acyltransferase and Cys/Met PLP-enzyme families can contain members with different substrates or reaction directions, and some proteins are bifunctional across the nominal routes. Exact activity evidence therefore takes precedence over a family label when instantiating the template in a genome. A MetH-only implementation is conditional on cobalamin availability. Per-genome candidates are keyed by KEGG Orthology: metA=K00651, metX=K00641, metB=K01739, metC=K01760, metY=K01740, metE=K00549, and metH=K00548. MetZ/O-succinylhomoserine sulfhydrylase and partial MetE-like proteins require species-aware review beyond those KO mappings. See modules/experimental/gluconeogenesis-context/kegg_oracle.py and modules/experimental/gluconeogenesis-context/resolve_genomes.py for per-genome route resolution and gap detection.
Activates homoserine to O-succinyl-L-homoserine.
Activates homoserine to O-acetyl-L-homoserine.
Two enzymes, drawing sulfur from cysteine via cystathionine.
One enzyme, using free sulfide on O-acetyl-homoserine.
One enzyme, using free sulfide on O-succinylhomoserine to form L-homocysteine. This route must be paired with a homoserine O-succinyltransferase rather than an O-acetyltransferase.
Converts O-succinyl-L-homoserine and sulfide to L-homocysteine; GO:0016765 captures the EC 2.5.1 transfer class; the exact O-succinylhomoserine reaction is stated here because GO lacks a more specific live molecular-function term.