Function
Locations
First and committed step; deficiency = DPAGT1-CDG (CDG-Ij) and a congenital myasthenic syndrome.
N-linked glycosylation begins with the stepwise assembly of the dolichol-linked oligosaccharide (LLO, or dolichol-PP-oligosaccharide) on the cytoplasmic face of the endoplasmic-reticulum membrane. Using nucleotide-sugar donors from the cytosol, the pathway builds a Man5GlcNAc2 glycan on the polyprenol carrier dolichyl phosphate before the intermediate is flipped into the ER lumen. DPAGT1 (GlcNAc-1-phosphotransferase, the first and committed step, and the tunicamycin target) transfers GlcNAc-1-P from UDP-GlcNAc onto dolichyl phosphate to give GlcNAc-PP-dolichol; the bipartite UDP-GlcNAc transferase ALG13/ALG14 (ALG13 catalytic, ALG14 membrane-anchoring) adds the second GlcNAc to form the chitobiose core GlcNAc2-PP-dolichol; ALG1 (beta-1,4-mannosyltransferase) adds the first mannose; the bifunctional ALG2 (alpha-1,3 and alpha-1,6 mannosyltransferase) adds the second and third mannoses to give Man3GlcNAc2-PP-dolichol; and ALG11 (alpha-1,2-mannosyltransferase) adds the fourth and fifth mannoses to complete Man5GlcNAc2-PP-dolichol, the final cytoplasmic-face intermediate (subsequently flipped to the lumen by the RFT1 flippase, and extended by the lumenal ALG enzymes). All the mannose-addition steps in this segment use GDP-mannose. Inherited defects in each step cause a congenital disorder of glycosylation (CDG type I): DPAGT1-CDG (and a congenital myasthenic syndrome), ALG13-CDG (an X-linked developmental/epileptic encephalopathy), ALG14-CDG (congenital myasthenic syndrome), ALG1-CDG, ALG2-CDG (and CMS14) and ALG11-CDG.
All recommended fields populated.
✗ none found
No MODULE:n_glycan_llo_assembly_cytoplasmic deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
6 complete review(s) · 0 with deep research · 0 missing review · 6 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| ALG1 Q9BT22 | ✓ | ✓ | ✗ |
| ALG11 Q2TAA5 | ✓ | ✓ | ✗ |
| ALG13 Q9NP73 | ✓ | ✓ | ✗ |
| ALG14 Q96F25 | ✓ | ✓ | ✗ |
| ALG2 Q9H553 | ✓ | ✓ | ✗ |
| DPAGT1 Q9H3H5 | ✓ | ✓ | ✗ |
Cytoplasmic-face segment of dolichol-linked oligosaccharide (LLO) assembly, grounded to the human enzymes DPAGT1 (UniProtKB:Q9H3H5, GO:0003975, EC 2.7.8.15), the ALG13/ALG14 UDP-GlcNAc transferase (Q9NP73 GO:0004577 catalytic + Q96F25 GO:0043495 anchor, EC 2.4.1.141), ALG1 (Q9BT22, GO:0004578, EC 2.4.1.142), ALG2 (Q9H553, GO:0004378/GO:0102704, EC 2.4.1.132/257) and ALG11 (Q2TAA5, GO:0004377, EC 2.4.1.131). GO molecular-function/location terms were taken from the completed human gene reviews and verified against the local go.db; Reactome reaction ids/titles were verified against the local reactome cache. Each step uses a PANTHER family selector with the human enzyme as representative so the module generalises across orthologs/paralogs. The ALG13/ALG14 step is modelled as a PROTEIN_COMPLEX node (catalytic + membrane-anchoring subunits; ALG14's core function is the non-catalytic adaptor activity GO:0043495, not a transferase term). Sugar donors are cytosolic UDP-GlcNAc (DPAGT1, ALG13/14) and GDP-mannose (ALG1, ALG2, ALG11). Downstream, Man5GlcNAc2-PP-Dol is flipped into the ER lumen by the RFT1 flippase (already reviewed) and extended by the lumenal ALG enzymes (ALG3, ALG9, ALG12, ALG6, ALG8, ALG10 — a separate module), then transferred to protein by the oligosaccharyltransferase. Dolichol-phosphate and the Dol-P-Man/Dol-P-Glc donors are supplied by a further module (DOLK, SRD5A3, DPM1/2/3, MPDU1, ALG5). Disorders: each step's loss is a CDG type I (DPAGT1-, ALG13-, ALG14-, ALG1-, ALG2-, ALG11-CDG), several also presenting as congenital myasthenic syndromes.
First and committed step; deficiency = DPAGT1-CDG (CDG-Ij) and a congenital myasthenic syndrome.
Catalytic subunit; deficiency = ALG13-CDG (X-linked developmental/epileptic encephalopathy).
Recruits/anchors catalytic ALG13 to the ER; the ALG13/ALG14 heterodimer forms the functional UDP-GlcNAc transferase.
First mannose of the LLO; deficiency = ALG1-CDG (CDG-Ik).
Bifunctional; adds 2nd (alpha-1,3) and 3rd (alpha-1,6) mannoses. Deficiency = ALG2-CDG (CDG-Ii) and congenital myasthenic syndrome (CMS14).
Completes Man5GlcNAc2-PP-Dol, the final cytoplasmic-face LLO intermediate (then flipped to the lumen by RFT1). Deficiency = ALG11-CDG (CDG-Ip).