N-glycan LLO assembly I — cytoplasmic face (to Man5GlcNAc2-PP-dolichol); DPAGT1/ALG13/ALG14/ALG1/ALG2/ALG11

N-linked glycosylation begins with the stepwise assembly of the dolichol-linked oligosaccharide (LLO, or dolichol-PP-oligosaccharide) on the cytoplasmic face of the endoplasmic-reticulum membrane. Using nucleotide-sugar donors from the cytosol, the pathway builds a Man5GlcNAc2 glycan on the polyprenol carrier dolichyl phosphate before the intermediate is flipped into the ER lumen. DPAGT1 (GlcNAc-1-phosphotransferase, the first and committed step, and the tunicamycin target) transfers GlcNAc-1-P from UDP-GlcNAc onto dolichyl phosphate to give GlcNAc-PP-dolichol; the bipartite UDP-GlcNAc transferase ALG13/ALG14 (ALG13 catalytic, ALG14 membrane-anchoring) adds the second GlcNAc to form the chitobiose core GlcNAc2-PP-dolichol; ALG1 (beta-1,4-mannosyltransferase) adds the first mannose; the bifunctional ALG2 (alpha-1,3 and alpha-1,6 mannosyltransferase) adds the second and third mannoses to give Man3GlcNAc2-PP-dolichol; and ALG11 (alpha-1,2-mannosyltransferase) adds the fourth and fifth mannoses to complete Man5GlcNAc2-PP-dolichol, the final cytoplasmic-face intermediate (subsequently flipped to the lumen by the RFT1 flippase, and extended by the lumenal ALG enzymes). All the mannose-addition steps in this segment use GDP-mannose. Inherited defects in each step cause a congenital disorder of glycosylation (CDG type I): DPAGT1-CDG (and a congenital myasthenic syndrome), ALG13-CDG (an X-linked developmental/epileptic encephalopathy), ALG14-CDG (congenital myasthenic syndrome), ALG1-CDG, ALG2-CDG (and CMS14) and ALG11-CDG.

MODULE:n_glycan_llo_assembly_cytoplasmicDRAFTMetabolic Pathwaymodules/n_glycan_llo_assembly_cytoplasmic.yaml
dolichol-linked oligosaccharide biosynthetic processGO:0006488 protein N-linked glycosylationGO:0006487
GO:0006488
dolichol-linked oligosaccharide biosynthetic process
The module is grounded in dolichol-linked oligosaccharide biosynthetic process (GO:0006488); it covers the cytoplasmic-face assembly of Man5GlcNAc2-PP-dolichol.
GO:0006487
protein N-linked glycosylation
The completed LLO is the donor for protein N-linked glycosylation (GO:0006487); each enzyme's loss reduces N-glycan occupancy (CDG type I).
Reactome:R-HSA-446193
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
Step order, intermediates and reaction stoichiometries follow the human Reactome LLO biosynthesis sub-pathway (R-HSA-446191/446207/446218/446208 for the cytoplasmic-face steps).
file:human/DPAGT1/DPAGT1-ai-review.yaml
DPAGT1 gene review (human)
The committed GlcNAc-1-P transfer to Dol-P (UniProtKB:Q9H3H5, GO:0003975) matches the completed human DPAGT1 review.
file:human/ALG13/ALG13-ai-review.yaml
ALG13 gene review (human)
The catalytic subunit of the second-GlcNAc transfer (UniProtKB:Q9NP73, GO:0004577) matches the completed human ALG13 review.
file:human/ALG14/ALG14-ai-review.yaml
ALG14 gene review (human)
The ER-membrane anchor of the ALG13/ALG14 transferase (UniProtKB:Q96F25, GO:0043495) matches the completed human ALG14 review.
file:human/ALG1/ALG1-ai-review.yaml
ALG1 gene review (human)
The first-mannose beta-1,4-mannosyltransferase step (UniProtKB:Q9BT22, GO:0004578) matches the completed human ALG1 review.
file:human/ALG2/ALG2-ai-review.yaml
ALG2 gene review (human)
The second/third-mannose alpha-1,3/1,6-mannosyltransferase step (UniProtKB:Q9H553, GO:0004378/GO:0102704) matches the completed human ALG2 review.
file:human/ALG11/ALG11-ai-review.yaml
ALG11 gene review (human)
The fourth/fifth-mannose alpha-1,2-mannosyltransferase step (UniProtKB:Q2TAA5, GO:0004377) matches the completed human ALG11 review.
6Nodes
5Parts
0Variant Sets
0Variants
6Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:n_glycan_llo_assembly_cytoplasmic deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (6/6 grounded genes reviewed)

6 complete review(s) · 0 with deep research · 0 missing review · 6 reviewed but lacking deep research

Gene Review Complete Deep research
ALG1 Q9BT22
ALG11 Q2TAA5
ALG13 Q9NP73
ALG14 Q96F25
ALG2 Q9H553
DPAGT1 Q9H3H5

Details

Context
cytoplasmic side of endoplasmic reticulum membraneGO:0098554 endoplasmic reticulum membraneGO:0005789
N-glycan LLO assembly, cytoplasmic face (to Man5GlcNAc2-PP-dolichol)Metabolic Pathwayn_glycan_llo_assembly_cytoplasmic
dolichol-linked oligosaccharide biosynthetic processGO:0006488 protein N-linked glycosylationGO:0006487
Context
cytoplasmic side of endoplasmic reticulum membraneGO:0098554 endoplasmic reticulum membraneGO:0005789

Cytoplasmic-face segment of dolichol-linked oligosaccharide (LLO) assembly, grounded to the human enzymes DPAGT1 (UniProtKB:Q9H3H5, GO:0003975, EC 2.7.8.15), the ALG13/ALG14 UDP-GlcNAc transferase (Q9NP73 GO:0004577 catalytic + Q96F25 GO:0043495 anchor, EC 2.4.1.141), ALG1 (Q9BT22, GO:0004578, EC 2.4.1.142), ALG2 (Q9H553, GO:0004378/GO:0102704, EC 2.4.1.132/257) and ALG11 (Q2TAA5, GO:0004377, EC 2.4.1.131). GO molecular-function/location terms were taken from the completed human gene reviews and verified against the local go.db; Reactome reaction ids/titles were verified against the local reactome cache. Each step uses a PANTHER family selector with the human enzyme as representative so the module generalises across orthologs/paralogs. The ALG13/ALG14 step is modelled as a PROTEIN_COMPLEX node (catalytic + membrane-anchoring subunits; ALG14's core function is the non-catalytic adaptor activity GO:0043495, not a transferase term). Sugar donors are cytosolic UDP-GlcNAc (DPAGT1, ALG13/14) and GDP-mannose (ALG1, ALG2, ALG11). Downstream, Man5GlcNAc2-PP-Dol is flipped into the ER lumen by the RFT1 flippase (already reviewed) and extended by the lumenal ALG enzymes (ALG3, ALG9, ALG12, ALG6, ALG8, ALG10 — a separate module), then transferred to protein by the oligosaccharyltransferase. Dolichol-phosphate and the Dol-P-Man/Dol-P-Glc donors are supplied by a further module (DOLK, SRD5A3, DPM1/2/3, MPDU1, ALG5). Disorders: each step's loss is a CDG type I (DPAGT1-, ALG13-, ALG14-, ALG1-, ALG2-, ALG11-CDG), several also presenting as congenital myasthenic syndromes.

Connections

dpagt1_step -> alg13_14_step Provides Input For
GlcNAc-PP-dolichol from DPAGT1 receives the second GlcNAc from the ALG13/ALG14 transferase.
alg13_14_step -> alg1_step Provides Input For
The chitobiose core GlcNAc2-PP-dolichol is the acceptor for the first mannose (ALG1).
alg1_step -> alg2_step Provides Input For
Man1GlcNAc2-PP-dolichol from ALG1 is extended by ALG2 with two more mannoses.
alg2_step -> alg11_step Provides Input For
Man3GlcNAc2-PP-dolichol from ALG2 is extended by ALG11 to Man5GlcNAc2-PP-dolichol.
Part 1: committed step (GlcNAc-1-P onto dolichyl phosphate)
UDP-GlcNAc + dolichyl phosphate to GlcNAc-PP-dolicholReactiondpagt1_step

Annotons

DPAGT1: GlcNAc-1-phosphotransferase
dpagt1_activity
Participant: Family: GlcNAc-1-phosphotransferase family (DPAGT1)
Family:
GlcNAc-1-phosphotransferase family (DPAGT1)PANTHER:PTHR10571
Representative Members: DPAGT1 (human)UniProtKB:Q9H3H5

Function

UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activityGO:0003975
Substrates: UDP-GlcNAc dolichyl phosphate
Products: GlcNAc-PP-dolichol UMP

Locations

endoplasmic reticulum membraneGO:0005789

First and committed step; deficiency = DPAGT1-CDG (CDG-Ij) and a congenital myasthenic syndrome.

Part 2: second GlcNAc (chitobiose core)
GlcNAc-PP-dolichol to GlcNAc2-PP-dolicholProtein Complexalg13_14_step

Annotons

ALG13: catalytic subunit of the UDP-GlcNAc transferase
alg13_activity
Participant: Family: ALG13 glycosyltransferase-28 family (catalytic subunit)
Family:
ALG13 glycosyltransferase-28 family (catalytic subunit)PANTHER:PTHR12867
Representative Members: ALG13 (human)UniProtKB:Q9NP73

Function

N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activityGO:0004577
Substrates: UDP-GlcNAc GlcNAc-PP-dolichol
Products: GlcNAc2-PP-dolichol (chitobiose core) UDP

Locations

cytoplasmic side of endoplasmic reticulum membraneGO:0098554

Catalytic subunit; deficiency = ALG13-CDG (X-linked developmental/epileptic encephalopathy).

ALG14: membrane-anchoring subunit
alg14_activity
Participant: Family: ALG14 family (membrane-anchoring subunit)
Family:
ALG14 family (membrane-anchoring subunit)PANTHER:PTHR12154
Representative Members: ALG14 (human)UniProtKB:Q96F25

Function

protein-membrane adaptor activityGO:0043495
Substrates: ALG13 (catalytic subunit)
Products: ER-membrane-anchored ALG13/ALG14 transferase

Locations

endoplasmic reticulum membraneGO:0005789

Recruits/anchors catalytic ALG13 to the ER; the ALG13/ALG14 heterodimer forms the functional UDP-GlcNAc transferase.

Part 3: first mannose (beta-1,4)
GlcNAc2-PP-dolichol to Man1GlcNAc2-PP-dolicholReactionalg1_step

Annotons

ALG1: beta-1,4-mannosyltransferase
alg1_activity
Participant: Family: ALG1 beta-mannosyltransferase family
Family:
ALG1 beta-mannosyltransferase familyPANTHER:PTHR13036
Representative Members: ALG1 (human)UniProtKB:Q9BT22

Function

chitobiosyldiphosphodolichol beta-mannosyltransferase activityGO:0004578
Substrates: GDP-mannose GlcNAc2-PP-dolichol
Products: Man1GlcNAc2-PP-dolichol GDP

Locations

endoplasmic reticulum membraneGO:0005789

First mannose of the LLO; deficiency = ALG1-CDG (CDG-Ik).

Part 4: second and third mannoses (alpha-1,3 and alpha-1,6)
Man1GlcNAc2-PP-dolichol to Man3GlcNAc2-PP-dolicholReactionalg2_step

Annotons

ALG2: alpha-1,3/1,6-mannosyltransferase
alg2_activity
Participant: Family: ALG2 mannosyltransferase family
Family:
ALG2 mannosyltransferase familyPANTHER:PTHR45918
Representative Members: ALG2 (human)UniProtKB:Q9H553

Function

GDP-Man:Man(1)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activityGO:0004378
Substrates: GDP-mannose (x2) Man1GlcNAc2-PP-dolichol
Products: Man3GlcNAc2-PP-dolichol GDP

Locations

endoplasmic reticulum membraneGO:0005789

Bifunctional; adds 2nd (alpha-1,3) and 3rd (alpha-1,6) mannoses. Deficiency = ALG2-CDG (CDG-Ii) and congenital myasthenic syndrome (CMS14).

Part 5: fourth and fifth mannoses (alpha-1,2) — completes Man5
Man3GlcNAc2-PP-dolichol to Man5GlcNAc2-PP-dolicholReactionalg11_step

Annotons

ALG11: alpha-1,2-mannosyltransferase
alg11_activity
Participant: Family: ALG11 mannosyltransferase family
Family:
ALG11 mannosyltransferase familyPANTHER:PTHR45919
Representative Members: ALG11 (human)UniProtKB:Q2TAA5

Function

GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activityGO:0004377
Substrates: GDP-mannose (x2) Man3GlcNAc2-PP-dolichol
Products: Man5GlcNAc2-PP-dolichol GDP

Locations

endoplasmic reticulum membraneGO:0005789

Completes Man5GlcNAc2-PP-Dol, the final cytoplasmic-face LLO intermediate (then flipped to the lumen by RFT1). Deficiency = ALG11-CDG (CDG-Ip).