Function
Locations
First lumenal mannose; deficiency = ALG3-CDG (CDG-Id).
After the Man5GlcNAc2-PP-dolichol intermediate is flipped from the cytoplasmic to the lumenal face of the endoplasmic-reticulum membrane (by the RFT1 flippase), the dolichol-linked oligosaccharide (LLO) is completed inside the ER lumen to the mature Glc3Man9GlcNAc2-PP-dolichol donor for protein N-linked glycosylation. Unlike the cytoplasmic-face steps, the lumenal glycosyltransferases use lipid-linked donors: dolichyl-phosphate-mannose (Dol-P-Man) for the mannose additions and dolichyl-phosphate-glucose (Dol-P-Glc) for the glucose additions. Four mannoses are added: ALG3 (alpha-1,3) adds the sixth mannose, ALG9 (alpha-1,2) adds the seventh and, later, the ninth mannose, and ALG12 (alpha-1,6) adds the eighth, giving Man9GlcNAc2-PP-dolichol. Three glucoses then cap the glycan: ALG6 (alpha-1,3) adds the first glucose, ALG8 (alpha-1,3) the second, and ALG10 (alpha-1,2) the third and terminal glucose, producing the mature Glc3Man9GlcNAc2-PP-dolichol. The terminal glucose is the recognition signal for efficient transfer of the glycan to nascent proteins by the oligosaccharyltransferase (and, after transfer, for glucosidase trimming and calnexin/calreticulin quality control). Inherited defects in each step cause a congenital disorder of glycosylation (CDG type I): ALG3-CDG (CDG-Id), ALG9-CDG (CDG-Il / Gillessen-Kaesbach-Nishimura syndrome), ALG12-CDG (CDG-Ig), ALG6-CDG (CDG-Ic, one of the commonest CDG-I subtypes) and ALG8-CDG (CDG-Ih).
All recommended fields populated.
✗ none found
No MODULE:n_glycan_llo_assembly_lumenal deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
6 complete review(s) · 0 with deep research · 0 missing review · 6 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| ALG10 Q5BKT4 | ✓ | ✓ | ✗ |
| ALG12 Q9BV10 | ✓ | ✓ | ✗ |
| ALG3 Q92685 | ✓ | ✓ | ✗ |
| ALG6 Q9Y672 | ✓ | ✓ | ✗ |
| ALG8 Q9BVK2 | ✓ | ✓ | ✗ |
| ALG9 Q9H6U8 | ✓ | ✓ | ✗ |
Lumenal-face + glucosylation segment of dolichol-linked oligosaccharide (LLO) assembly, grounded to the human enzymes ALG3 (UniProtKB:Q92685, GO:0052925, EC 2.4.1.258), ALG9 (Q9H6U8, GO:0052926 + GO:0052918, EC 2.4.1.259/261), ALG12 (Q9BV10, GO:0052917, EC 2.4.1.260), ALG6 (Q9Y672, GO:0042281, EC 2.4.1.267), ALG8 (Q9BVK2, GO:0042283, EC 2.4.1.265) and ALG10 (Q5BKT4, GO:0106073, EC 2.4.1.256). GO molecular-function/location terms were taken from the completed human gene reviews and verified against the local go.db; Reactome reaction ids/titles were verified against the local reactome cache (ALG10 has no cached WT Reactome reaction, so its node is grounded on EC 2.4.1.256 and the umbrella pathway R-HSA-446193). Each step uses a PANTHER family selector with the human enzyme as representative so the module generalises across orthologs/paralogs; ALG9/ALG12 share PTHR22760 and ALG6/ALG8 share PTHR12413. ALG9 appears twice (steps 2 and 4) because it is bifunctional (adds both the 7th and 9th mannoses). All lumenal steps use lipid-linked donors — Dol-P-Man for mannoses, Dol-P-Glc for glucoses — supplied by the dolichol/sugar-donor module (DOLK, SRD5A3, DPM1/2/3, MPDU1, ALG5; to follow). Upstream is the cytoplasmic-face module (DPAGT1/ALG13/ALG14/ALG1/ALG2/ALG11 -> Man5GlcNAc2-PP-Dol, flipped by RFT1); downstream the mature Glc3Man9GlcNAc2-PP-Dol is transferred to protein by the oligosaccharyltransferase. Disorders: each step's loss is a CDG type I (ALG3-, ALG9-, ALG12-, ALG6-, ALG8-CDG; ALG6-CDG/CDG-Ic is one of the commonest).
First lumenal mannose; deficiency = ALG3-CDG (CDG-Id).
7th mannose; ALG9 is bifunctional and later adds the 9th mannose. Deficiency = ALG9-CDG (CDG-Il) / Gillessen-Kaesbach-Nishimura syndrome.
8th mannose; deficiency = ALG12-CDG (CDG-Ig).
9th mannose (same enzyme as step 2), completing the Man9 core.
First glucose; deficiency = ALG6-CDG (CDG-Ic, a common CDG-I subtype).
Second glucose; deficiency = ALG8-CDG (CDG-Ih).
Terminal glucose completing Glc3Man9GlcNAc2-PP-dolichol, the mature LLO transferred to protein by the oligosaccharyltransferase.