OpgH-associated periplasmic glucan synthesis and processing
OpgH membrane glucosyltransferases support synthesis of beta-glucan backbones in characterized OpgGH-dependent systems. The required native chemical contribution of OpgG remains unresolved. Particular realizations additionally need OpgI or a compatible ACP-dependent membrane system. Periplasmic processing includes E. coli OpgD hydrolysis and Xanthomonas OpgD alpha-1,6 cyclization, which are distinct reactions within the same protein subfamily. Caulobacter OpgH provides a comparative homolog whose native product chemistry remains unresolved.
The required H/G pair describes the OpgGH-associated backbone mechanism, not a sufficient two-gene recipe for a native final product. OpgI and ACP are optional at the generic node but obligatory in their documented conditional systems. Native endpoint checks must enforce those conditions and compatible same-organism partners. The family classifier cannot distinguish SF3 hydrolysis from cyclization, nor does SF5 identify an experimentally proven OPG product in Caulobacter. The separate source-scoped capacity evaluation must enforce actual activity evidence. The Caulobacter comparator cannot satisfy a native OpgGH-product endpoint. Rhodobacter 2.4.1 gene perturbations and WS8 product NMR are distinct experiments. Cyclic products do not imply the Ndv/Chv/Cgs route, which is outside this OpgH-associated mechanism. The module does not equate failed product detection with absence, infer OpgH-alone sufficiency, assign OpgG branching, or make OpgH/FtsZ moonlighting a synthesis requirement. All eleven representative gene reviews are complete. The scoped evaluator distinguishes native-process evidence, supplied-substrate chemistry and qualified inference; it does not infer arbitrary proteome capacity from family labels.
Derived QC
Recommended-field compliance
All recommended fields populated.
Module deep research
✓ present
- osmoregulated_periplasmic_glucan_biosynthesis-deep-research-openscientist.md (openscientist)
Leaf nodes lacking representative members
✓ every leaf node grounds to a representative protein.
Template conformance
✓ every declared conforms_to bundle matches its template motif.
Function consistency and core coverage
5 gene-function check(s) reflected in core functions · 0 conflict(s) · 5 evidence or coverage gap(s) (10 comparison(s))
Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.
| Annoton | Participant | Function | Assessment |
|---|---|---|---|
| opgH_glucosyltransferase | opgH (ECOLI) UniProtKB:P62517 Family Representative |
glucosyltransferase activity GO:0046527 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| opgH_glucosyltransferase | opgH (PSEPK) UniProtKB:Q88D04 Family Representative |
glucosyltransferase activity GO:0046527 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| opgH_glucosyltransferase | opgH (CERS4) UniProtKB:Q9FA52 Family Representative |
glucosyltransferase activity GO:0046527 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| ecoli_opgD_hydrolysis | opgD (ECOLI) UniProtKB:P40120 Family Representative |
glucan endo-1,2-beta-glucosidase activity GO:0033913 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| xcc_opgD_cyclization | opgD (XANCP) UniProtKB:Q8P3C6 Family Representative |
alpha-1,6-cyclized beta-1,2-glucohexadecaose synthase activity No function ID |
No Function Id
A gene review exists, but this function lacks a GO identifier. Free-text chemistry is not automatically compared. |
| caulobacter_opgH_comparator | opgH (CAUVN) UniProtKB:B8GX72 Family Representative |
glucosyltransferase activity GO:0046527 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| opgH_glucosyltransferase | OpgH-family membrane glucosyltransferases PANTHER:PTHR43867:SF5 Family |
glucosyltransferase activity GO:0046527 |
Family Function Unreviewed
The family review has no applicable adjudication supporting or excluding GO:0046527. |
| ecoli_opgD_hydrolysis | Hydrolytically characterized OpgD-like proteins within GH186 PANTHER:PTHR30504:SF3 Family |
glucan endo-1,2-beta-glucosidase activity GO:0033913 |
Family Function Unreviewed
Family review leaves GO:0033913 UNRESOLVED. Member-level hydrolysis is established for E. coli P40120 and P33136, and inferred for KT2440 Q88D03 with a documented sequence bridge. Neither the whole family nor all SF3 can receive this activity: Q8P3C6 has characterized cyclizing transfer chemistry. SF4-wide activity is not established merely by the E. coli assay. UNRESOLVED describes the family-wide grant, not doubt that the measured E. coli activity exists. No unvalidated single-residue classifier is asserted. |
| xcc_opgD_cyclization | Cyclizing OpgD-like proteins within GH186 PANTHER:PTHR30504:SF3 Family |
alpha-1,6-cyclized beta-1,2-glucohexadecaose synthase activity No function ID |
No Function Id
The family function has no GO identifier for comparison; prose is not matched. |
| caulobacter_opgH_comparator | Caulobacter OpgH homologs PANTHER:PTHR43867:SF5 Family |
glucosyltransferase activity GO:0046527 |
Family Function Unreviewed
The family review has no applicable adjudication supporting or excluding GO:0046527. |
Gene-review completeness (11/11 grounded genes reviewed)
8 complete review(s) · 2 with deep research · 0 missing review · 9 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| acpP P0A6A8 | ✓ | 28/29 | ✗ |
| opgD P40120 | ✓ | ✓ | ✗ |
| opgD Q8P3C6 | ✓ | ✓ | ✗ |
| opgG P33136 | ✓ | ✓ | ✗ |
| opgG Q88D03 | ✓ | ✓ | ✓ |
| opgG Q9FA54 | ✓ | ✓ | ✗ |
| opgH B8GX72 | ✓ | 2/3 | ✗ |
| opgH P62517 | ✓ | ✓ | ✗ |
| opgH Q88D04 | ✓ | ✓ | ✓ |
| opgH Q9FA52 | ✓ | ✓ | ✗ |
| opgI Q3J1N3 | ✓ | 0/0 | ✗ |
Details
Mechanism sampled in alpha- and gammaproteobacterial lineages, not a claim of universal presence in this phylum or of absence elsewhere.
Mechanism sampled in alpha- and gammaproteobacterial lineages, not a claim of universal presence in this phylum or of absence elsewhere.
Membrane-system and genetic evidence support the activity; the protein alone is not an autonomous whole-pathway reconstruction.
Annotons
OpgG is required in the characterized OpgGH/OpgGIH systems. Measured weak hydrolysis in E. coli is recorded in the individual review; it is not imposed as the native required reaction or transferred to every GH186 member.
Annotons
Processes
Locations
Annotons
Processes
Locations
Required in the tested 2.4.1 implementation. Biochemical role and any general family boundary remain unresolved.
Annotons
The corrected 66-residue protein is required by nonpolar disruption/rescue experiments. This is a system dependency, not a new assertion of catalytic or ACP-like activity. No PANTHER family identifier is established.
Documented for the E. coli membrane system; prosthetic-group-independent and not interchangeable with every ACP homolog.
Annotons
Processes
A biochemically demonstrated system component; this role does not require the phosphopantetheine group used in acyl transfer. An arbitrary ACP homolog is not a compatible replacement, and the requirement is not generalized to every OpgH-containing organism.
Direct intrinsic hydrolysis is distinct from the inferred native trimming mechanism. OpgD deletion still permits OPG production.
Annotons
Function
Processes
Locations
Purified XccOpgD alone converts supplied linear beta-1,2-glucan to the cyclic16 product. A complete native synthesis route is not established merely from that assay.
Annotons
Function
Processes
Locations
A functionally informative homolog, not a demonstrated native OpgGH-product witness.