Pentose phosphate pathway — oxidative branch (NADPH generation); G6PD deficiency / favism

The oxidative branch of the pentose phosphate pathway is the cytosolic route that diverts glucose-6-phosphate away from glycolysis to generate NADPH and pentose sugars. In three irreversible steps it converts glucose-6-phosphate to ribulose-5-phosphate, producing two molecules of NADPH and one CO2: glucose-6-phosphate dehydrogenase (G6PD) oxidises glucose-6-phosphate to 6-phosphogluconolactone (reducing NADP+ to NADPH) as the committed, rate-limiting step; 6-phosphogluconolactonase (PGLS) hydrolyses the labile lactone to 6-phosphogluconate; and 6-phosphogluconate dehydrogenase (PGD) oxidatively decarboxylates 6-phosphogluconate to ribulose-5-phosphate + CO2 (reducing a second NADP+). The NADPH produced is the cell's principal reducing power for reductive biosynthesis (fatty acids, cholesterol, nucleotides) and, critically in erythrocytes, for regenerating reduced glutathione to defend against oxidative stress; the ribulose-5-phosphate feeds the non-oxidative branch (and thence ribose-5-phosphate for nucleotide synthesis). Inherited G6PD deficiency is the most common human enzyme defect (~400 million people), X-linked, causing acute oxidant-triggered hemolytic anemia (favism, drug/infection-induced), neonatal jaundice, and — in severe class-I variants — chronic nonspherocytic hemolytic anemia.

MODULE:pentose_phosphate_oxidative_branchDRAFTMetabolic Pathwaymodules/pentose_phosphate_oxidative_branch.yaml
pentose-phosphate shunt, oxidative branchGO:0009051
GO:0009051
pentose-phosphate shunt, oxidative branch
The module is grounded in the GO pentose-phosphate shunt, oxidative branch (GO:0009051): glucose-6-phosphate to ribulose-5-phosphate with 2 NADPH.
Reactome:R-HSA-71336
Pentose phosphate pathway
Step order and reaction stoichiometries follow the human Reactome "Pentose phosphate pathway" reactions R-HSA-70377 (G6PD), R-HSA-71296 (PGLS) and R-HSA-71299 (PGD).
file:human/G6PD/G6PD-ai-review.yaml
G6PD gene review (human)
The rate-limiting dehydrogenase step (UniProtKB:P11413, GO:0004345) matches the completed human G6PD review.
file:human/PGLS/PGLS-ai-review.yaml
PGLS gene review (human)
The lactonase step (UniProtKB:O95336, GO:0017057) matches the completed human PGLS review.
file:human/PGD/PGD-ai-review.yaml
PGD gene review (human)
The oxidative-decarboxylation step (UniProtKB:P52209, GO:0004616) matches the completed human PGD review.
4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
2Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:pentose_phosphate_oxidative_branch deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (3/3 grounded genes reviewed)

2 complete review(s) · 0 with deep research · 0 missing review · 3 reviewed but lacking deep research

Gene Review Complete Deep research
G6PD P11413
PGD P52209 26/27
PGLS O95336

Details

Context
cytosolGO:0005829
Pentose phosphate pathway (oxidative branch)Metabolic Pathwaypentose_phosphate_oxidative_branch
pentose-phosphate shunt, oxidative branchGO:0009051
Context
cytosolGO:0005829

Three-step oxidative branch of the pentose phosphate pathway grounded to the human enzymes G6PD (UniProtKB:P11413, GO:0004345, EC 1.1.1.49), PGLS (O95336, GO:0017057, EC 3.1.1.31) and PGD (P52209, GO:0004616, EC 1.1.1.44). GO molecular-function terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. Each step uses a PANTHER family selector (generic over orthologs) with the human enzyme as representative. Net output per glucose-6-phosphate: 2 NADPH + 1 CO2 + ribulose-5-phosphate. Downstream, ribulose-5-phosphate enters the non-oxidative branch (RPE, RPIA, TKT, TALDO1) and provides ribose-5-phosphate for PRPP / nucleotide synthesis (a separate module, to follow). Upstream, glucose-6-phosphate is the shared hub with glycolysis (via GPI), glycogen metabolism (PGM1) and the glucose-6-phosphatase system. G6PD-generated NADPH also supports the glutathione antioxidant system and NADPH oxidases. Of these three enzymes only G6PD has a common Mendelian disease (X-linked deficiency / favism, the most prevalent human enzymopathy); PGLS and PGD are included for pathway completeness. The distinct ER-lumenal G6PD paralog H6PD (hexose-6-phosphate dehydrogenase), which supplies NADPH for 11beta-HSD1 glucocorticoid activation, is a separate system and not part of this cytosolic module.

Connections

g6pd_step -> pgls_step Provides Input For
The 6-phosphogluconolactone from G6PD is hydrolysed by PGLS.
pgls_step -> pgd_step Provides Input For
The 6-phosphogluconate from PGLS is oxidatively decarboxylated by PGD.
Part 1: committed, rate-limiting dehydrogenation (1st NADPH)
D-glucose-6-phosphate + NADP+ to 6-phospho-D-glucono-1,5-lactone + NADPHReactiong6pd_step

Annotons

G6PD: glucose-6-phosphate dehydrogenase
g6pd_activity
Participant: Family: Glucose-6-phosphate dehydrogenase family (G6PD)
Family:
Glucose-6-phosphate dehydrogenase family (G6PD)PANTHER:PTHR23429
Representative Members: G6PD (human)UniProtKB:P11413

Function

glucose-6-phosphate dehydrogenase activityGO:0004345
Substrates: D-glucose 6-phosphate NADP+
Products: 6-phospho-D-glucono-1,5-lactone NADPH

Locations

cytosolGO:0005829

Rate-limiting, committed step; principal cytosolic NADPH source (reductive biosynthesis and erythrocyte glutathione antioxidant defense). Requires a structural NADP+; dimer/tetramer. X-linked G6PD deficiency = favism (most common human enzymopathy).

Part 2: hydrolysis of the labile lactone
6-phospho-D-glucono-1,5-lactone + H2O to 6-phospho-D-gluconateReactionpgls_step

Annotons

PGLS: 6-phosphogluconolactonase
pgls_activity
Participant: Family: 6-phosphogluconolactonase / glucosamine-6-P isomerase family (PGLS)
Family:
6-phosphogluconolactonase / glucosamine-6-P isomerase family (PGLS)PANTHER:PTHR11054
Representative Members: PGLS (human)UniProtKB:O95336

Function

6-phosphogluconolactonase activityGO:0017057
Substrates: 6-phospho-D-glucono-1,5-lactone water
Products: 6-phospho-D-gluconate

Locations

cytosolGO:0005829

Hydrolyses the labile 6-phosphogluconolactone from G6PD to 6-phosphogluconate, preventing accumulation of the reactive intermediate. No established Mendelian disease; included as the middle oxidative-PPP step.

Part 3: oxidative decarboxylation to ribulose-5-phosphate (2nd NADPH)
6-phospho-D-gluconate + NADP+ to D-ribulose-5-phosphate + CO2 + NADPHReactionpgd_step

Annotons

PGD: 6-phosphogluconate dehydrogenase (decarboxylating)
pgd_activity
Participant: Family: 6-phosphogluconate dehydrogenase family (PGD)
Family:
6-phosphogluconate dehydrogenase family (PGD)PANTHER:PTHR11811
Representative Members: PGD (human)UniProtKB:P52209

Function

phosphogluconate dehydrogenase (decarboxylating) activityGO:0004616
Substrates: 6-phospho-D-gluconate NADP+
Products: D-ribulose 5-phosphate CO2 NADPH

Locations

cytosolGO:0005829

Oxidative decarboxylation of 6-phosphogluconate to ribulose-5-phosphate + CO2, producing the second NADPH. Its product ribulose-5-phosphate enters the non-oxidative branch (and ribose-5-phosphate for nucleotide synthesis).