Phosphorylase kinase complex (activates glycogenolysis) — GSD IX

Phosphorylase kinase (PhK) is the large (~1.3 MDa) hexadecameric (alpha-beta-gamma-delta)4 holoenzyme that switches on glycogen breakdown by phosphorylating glycogen phosphorylase on Ser14, converting the low-activity phosphorylase b to the active phosphorylase a. It is the key node coupling hormonal and neural/contractile signals to glycogenolysis: the catalytic gamma subunit (muscle PHKG1 / liver-testis PHKG2) is a Ca2+/calmodulin-regulated Ser/Thr protein kinase held in an autoinhibited state by the large regulatory alpha (muscle PHKA1 / liver PHKA2) and beta (PHKB) subunits; phosphorylation of the alpha and beta subunits by cAMP-dependent protein kinase (PKA, downstream of adrenaline/glucagon) and Ca2+ binding to the delta subunit (calmodulin, which reports muscle contraction) relieve this inhibition and activate the complex. The activated PhK then phosphorylates glycogen phosphorylase, triggering the phosphorolysis step of glycogenolysis. Inherited defects cause glycogen storage disease type IX (one of the most common glycogenoses), with tissue-specific subtypes reflecting the subunit isoforms: PHKA2 -> GSD IXa (X-linked liver, most common); PHKB -> GSD IXb (liver + muscle); PHKG2 -> GSD IXc (liver, more severe, cirrhosis risk); PHKA1 -> GSD IXd (X-linked muscle, exercise intolerance).

MODULE:phosphorylase_kinase_complexDRAFTProtein Complexmodules/phosphorylase_kinase_complex.yaml
phosphorylase kinase activityGO:0004689
GO:0004689
phosphorylase kinase activity
The complex carries out phosphorylase kinase activity (GO:0004689), assembled as the phosphorylase kinase complex (GO:0005964).
Reactome:R-HSA-71588
glycogen phosphorylase (PYGL) dimer b + 2 ATP => glycogen phosphorylase
The activated holoenzyme phosphorylates glycogen phosphorylase b to a in the human Reactome reactions R-HSA-71588 (liver PYGL) and R-HSA-71541 (muscle PYGM), the activation step upstream of the glycogenolysis module.
file:human/PHKG2/PHKG2-ai-review.yaml
PHKG2 gene review (human)
The catalytic gamma subunit (UniProtKB:P15735, GO:0004689) matches the completed human PHKG2 review.
file:human/PHKA1/PHKA1-ai-review.yaml
PHKA1 gene review (human)
The muscle alpha regulatory subunit (UniProtKB:P46020) matches the completed human PHKA1 review.
file:human/PHKA2/PHKA2-ai-review.yaml
PHKA2 gene review (human)
The liver alpha regulatory subunit (UniProtKB:P46019) matches the completed human PHKA2 review.
file:human/PHKB/PHKB-ai-review.yaml
PHKB gene review (human)
The beta regulatory subunit (UniProtKB:Q93100) matches the completed human PHKB review.
2Nodes
1Parts
0Variant Sets
0Variants
3Annotons
0Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:phosphorylase_kinase_complex deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (4/4 grounded genes reviewed)

4 complete review(s) · 0 with deep research · 0 missing review · 4 reviewed but lacking deep research

Gene Review Complete Deep research
PHKA1 P46020
PHKA2 P46019
PHKB Q93100
PHKG2 P15735

Details

Context
cytosolGO:0005829
Phosphorylase kinase complexProtein Complexphosphorylase_kinase_complex
phosphorylase kinase activityGO:0004689
Context
cytosolGO:0005829

The phosphorylase kinase (alpha-beta-gamma-delta)4 holoenzyme grounded to the human subunits PHKG2 (catalytic gamma, UniProtKB:P15735, GO:0004689, EC 2.7.11.19), the regulatory alpha subunits PHKA1 (P46020, muscle) / PHKA2 (P46019, liver) and the regulatory beta subunit PHKB (Q93100). GO molecular-function terms were taken from the human GOA records; the catalytic annoton uses the phosphorylase kinase activity term, while the non-catalytic alpha/beta annotons use calmodulin binding (their experimentally-supported MF) with the regulatory role described in text — the complex's catalytic activity resides solely in the gamma subunit. Reactome reaction ids and titles were verified against the local reactome cache. The gamma subunit uses PANTHER PTHR24347 (a broad Ser/Thr-kinase family; the phosphorylase-kinase catalytic subfamily), and the alpha and beta subunits share PANTHER PTHR10749 (phosphorylase b kinase regulatory subunit) — PHKA1/PHKA2 as alpha representatives and PHKB as the beta representative. The delta subunit is calmodulin (CALM1/CALM2/ CALM3), a distinct tightly-bound protein that confers Ca2+ sensitivity and is not reviewed here. Functionally, activated PhK phosphorylates glycogen phosphorylase b -> a (human Reactome R-HSA-71588 liver / R-HSA-71541 muscle), the activation input to the phosphorylase step of the glycogenolysis module (positive regulation of glycogen catabolic process, GO:0045819). Disorders: PHKA2 -> GSD IXa (X-linked liver); PHKB -> GSD IXb; PHKG2 -> GSD IXc; PHKA1 -> GSD IXd (X-linked muscle).

Part 1: (alpha-beta-gamma-delta)4 phosphorylase kinase holoenzyme
phosphorylase kinase (alpha-beta-gamma-delta)4 complexProtein Complexphk_holoenzyme

Annotons

PHKG1/PHKG2: catalytic gamma subunit
phk_gamma
Participant: Family: Phosphorylase kinase catalytic gamma subunit (PHKG1/PHKG2)
Family:
Phosphorylase kinase catalytic gamma subunit (PHKG1/PHKG2)PANTHER:PTHR24347
Representative Members: PHKG2 (human, liver/testis catalytic subunit)UniProtKB:P15735

Function

phosphorylase kinase activityGO:0004689
Substrates: glycogen phosphorylase b (Ser14) ATP
Products: glycogen phosphorylase a (phospho-Ser14) ADP

Locations

cytosolGO:0005829

The catalytic Ser/Thr protein kinase of the complex; all phosphorylase kinase activity resides here. Tissue isoforms PHKG1 (muscle) and PHKG2 (liver/testis, GSD IXc). Held autoinhibited by the alpha/beta subunits and activated via the calmodulin (delta) subunit.

PHKA1/PHKA2: regulatory alpha subunit
phk_alpha
Participant: Family: Phosphorylase b kinase regulatory subunit (PHKA1/PHKA2/PHKB)
Family:
Phosphorylase b kinase regulatory subunit (PHKA1/PHKA2/PHKB)PANTHER:PTHR10749
Representative Members: PHKA1 (human, muscle alpha)UniProtKB:P46020 PHKA2 (human, liver alpha)UniProtKB:P46019

Function

calmodulin bindingGO:0005516

Locations

cytosolGO:0005829

Large non-catalytic regulatory subunit (isoforms PHKA1 muscle / PHKA2 liver). A cAMP-dependent-protein-kinase (PKA) phosphorylation target that, with the calmodulin delta subunit, relieves autoinhibition and activates the catalytic gamma subunit. PHKA2 -> GSD IXa; PHKA1 -> GSD IXd.

PHKB: regulatory beta subunit
phk_beta
Participant: Family: Phosphorylase b kinase regulatory subunit (PHKA1/PHKA2/PHKB)
Family:
Phosphorylase b kinase regulatory subunit (PHKA1/PHKA2/PHKB)PANTHER:PTHR10749
Representative Members: PHKB (human, beta subunit)UniProtKB:Q93100

Function

calmodulin bindingGO:0005516

Locations

cytosolGO:0005829

Non-catalytic regulatory/scaffold subunit shared by the muscle and liver holoenzymes; a PKA-phosphorylation target contributing to activation of the catalytic gamma subunit. Deficiency causes GSD IXb (liver + muscle).