Propionyl-CoA catabolism (propionate to succinyl-CoA via the methylmalonyl-CoA pathway)

The mitochondrial pathway that converts propionyl-CoA to succinyl-CoA, the anaplerotic route by which propionate carbon enters the TCA cycle. Propionyl-CoA arises from the catabolism of the branched-chain amino acids isoleucine and valine, of methionine and threonine, of odd-chain fatty acids, and of the cholesterol side chain (and from gut-microbial propionate). Three enzymatic steps: (1) the biotin-dependent propionyl-CoA carboxylase (PCC), an alpha6-beta6 dodecamer of PCCA (biotin-carboxylase / biotin-carboxyl-carrier alpha subunit) and PCCB (carboxyltransferase beta subunit), carboxylates propionyl-CoA to (2S)-methylmalonyl-CoA (D-methylmalonyl-CoA) using bicarbonate and ATP; (2) methylmalonyl-CoA epimerase (MCEE) racemises this to (2R)-methylmalonyl-CoA (L-methylmalonyl-CoA); and (3) the adenosylcobalamin (AdoCbl / vitamin B12)- dependent methylmalonyl-CoA mutase (MMUT) performs the carbon-skeleton rearrangement of L-methylmalonyl-CoA to succinyl-CoA. The mutase step depends on a dedicated cobalamin cofactor-supply system: MMAB (cblB) is the ATP:cob(I)alamin adenosyltransferase that synthesises AdoCbl, and MMAA (cblA) is a mitochondrial G3E-family GTPase that gates AdoCbl loading onto MMUT and protects/reactivates the holo-mutase. Inherited defects map cleanly onto the steps: PCCA/PCCB → propionic acidemia; MCEE → (usually mild) methylmalonic aciduria; MMUT → methylmalonic aciduria (mut type); MMAB → cblB and MMAA → cblA methylmalonic aciduria (both often vitamin-B12-responsive because they act on cofactor supply).

MODULE:propionyl_coa_catabolismDRAFTMetabolic Pathwaymodules/propionyl_coa_catabolism.yaml
propionyl-CoA catabolic processGO:1902859
GO:1902859
propionyl-CoA catabolic process
The module is grounded in the GO propionyl-CoA catabolic process (GO:1902859) leading to succinyl-CoA.
Reactome:R-HSA-71032
Propionyl-CoA catabolism
Step order and reaction stoichiometries follow the human Reactome "Propionyl-CoA catabolism" pathway (R-HSA-71032): R-HSA-71031 (PCC), R-HSA-71020 (MCEE), R-HSA-71010 (MMUT), with AdoCbl supply by MMAB (R-HSA-3159253) and MMAA-gated loading (R-HSA-3159259).
file:human/PCCA/PCCA-ai-review.yaml
PCCA gene review (human)
The PCC alpha-subunit grounding (UniProtKB:P05165, GO:0004658 propionyl-CoA carboxylase activity) matches the completed human PCCA review.
file:human/PCCB/PCCB-ai-review.yaml
PCCB gene review (human)
The PCC beta-subunit grounding (UniProtKB:P05166, GO:0004658) matches the completed human PCCB review.
file:human/MCEE/MCEE-ai-review.yaml
MCEE gene review (human)
The epimerase step grounding (UniProtKB:Q96PE7, GO:0004493 methylmalonyl-CoA epimerase activity) matches the completed human MCEE review.
file:human/MMUT/MMUT-ai-review.yaml
MMUT gene review (human)
The mutase step grounding (UniProtKB:P22033, GO:0004494 methylmalonyl-CoA mutase activity, GO:0031419 cobalamin binding) matches the completed human MMUT review.
file:human/MMAB/MMAB-ai-review.yaml
MMAB gene review (human)
The AdoCbl-synthesis step (UniProtKB:Q96EY8, GO:0008817 cob(I)alamin adenosyltransferase activity) matches the completed human MMAB review.
file:human/MMAA/MMAA-ai-review.yaml
MMAA gene review (human)
The cofactor-loading GTPase chaperone (UniProtKB:Q8IVH4, GO:0003924 GTPase activity) matches the completed human MMAA review.
5Nodes
4Parts
0Variant Sets
0Variants
6Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:propionyl_coa_catabolism deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (6/6 grounded genes reviewed)

5 complete review(s) · 1 with deep research · 0 missing review · 5 reviewed but lacking deep research

Gene Review Complete Deep research
MCEE Q96PE7
MMAA Q8IVH4
MMAB Q96EY8
MMUT P22033 53/54
PCCA P05165
PCCB P05166

Details

Context
mitochondrial matrixGO:0005759
Propionyl-CoA catabolism (methylmalonyl-CoA pathway)Metabolic Pathwaypropionyl_coa_catabolism
propionyl-CoA catabolic processGO:1902859
Context
mitochondrial matrixGO:0005759

Three-enzyme mitochondrial propionyl-CoA catabolism plus its adenosylcobalamin cofactor-supply system, grounded to the human enzymes PCCA (UniProtKB:P05165) and PCCB (P05166) of propionyl-CoA carboxylase (GO:0004658, EC 6.4.1.3), MCEE (Q96PE7, GO:0004493, EC 5.1.99.1) and MMUT (P22033, GO:0004494, EC 5.4.99.2), with cofactor supply by MMAB (Q96EY8, GO:0008817, EC 2.5.1.17) and the GTPase chaperone MMAA (Q8IVH4, GO:0003924). GO molecular-function terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. Each step uses a PANTHER family selector (generic over paralogs and orthologs) plus a concrete human representative member. Upstream, propionyl-CoA derives from Ile/Val/Met/Thr, odd-chain fatty acids and the cholesterol side chain (see the BCAA catabolism module for the Ile/Val source); downstream, succinyl-CoA is anaplerotic for the TCA cycle. MMAA is deliberately represented as a cofactor chaperone (GTPase), not as a methylmalonyl-CoA-metabolizing enzyme.

Connections

pcc_step -> mcee_step Provides Input For
(S)-methylmalonyl-CoA from PCC is epimerised by MCEE.
mcee_step -> mmut_step Provides Input For
(R)-methylmalonyl-CoA from MCEE is the substrate of MMUT.
adocbl_supply -> mmut_step Positively Regulates
MMAB synthesises AdoCbl and MMAA gates its loading/maintenance on MMUT; without this cofactor supply the mutase step cannot proceed (cblA/cblB methylmalonic aciduria phenocopy mut-type deficiency).
Part 1: biotin-dependent carboxylation (committed step)
propionyl-CoA + HCO3- + ATP to (S)-methylmalonyl-CoA + ADP + PiProtein Complexpcc_step

Annotons

PCCA: propionyl-CoA carboxylase alpha (biotin carboxylase)
pcca_activity
Participant: Family: Biotin-dependent carboxylase alpha/biotin-carboxylase family (PCCA)
Family:
Biotin-dependent carboxylase alpha/biotin-carboxylase family (PCCA)PANTHER:PTHR18866
Representative Members: PCCA (human)UniProtKB:P05165

Function

propionyl-CoA carboxylase activityGO:0004658
Substrates: propionyl-CoA hydrogencarbonate ATP biotin (covalent cofactor)
Products: (S)-methylmalonyl-CoA ADP phosphate

Locations

mitochondrial matrixGO:0005759

Biotin-carrying alpha subunit: ATP-dependently carboxylates its covalently-bound biotin using bicarbonate, then the carboxyl group is transferred (by PCCB) to propionyl-CoA. PCCA + PCCB assemble as an alpha6-beta6 dodecamer. Loss of function causes propionic acidemia.

PCCB: propionyl-CoA carboxylase beta (carboxyltransferase)
pccb_activity
Participant: Family: Propionyl-CoA carboxylase beta / carboxyltransferase family (PCCB)
Family:
Propionyl-CoA carboxylase beta / carboxyltransferase family (PCCB)PANTHER:PTHR43842
Representative Members: PCCB (human)UniProtKB:P05166

Function

propionyl-CoA carboxylase activityGO:0004658
Substrates: propionyl-CoA carboxybiotin (from PCCA)
Products: (S)-methylmalonyl-CoA

Locations

mitochondrial matrixGO:0005759

Carboxyltransferase beta subunit: binds propionyl-CoA and transfers the carboxyl group from carboxybiotin to it, producing (S)-methylmalonyl-CoA. Loss of function causes propionic acidemia.

Part 2: epimerization to the mutase substrate
(S)-methylmalonyl-CoA to (R)-methylmalonyl-CoAReactionmcee_step

Annotons

MCEE: methylmalonyl-CoA epimerase
mcee_activity
Participant: Family: Methylmalonyl-CoA epimerase / VOC (glyoxalase) superfamily (MCEE)
Family:
Methylmalonyl-CoA epimerase / VOC (glyoxalase) superfamily (MCEE)PANTHER:PTHR43048
Representative Members: MCEE (human)UniProtKB:Q96PE7

Function

methylmalonyl-CoA epimerase activityGO:0004493
Substrates: (S)-methylmalonyl-CoA
Products: (R)-methylmalonyl-CoA

Locations

mitochondrial matrixGO:0005759

Racemises the PCC product to the (2R)/L-isomer that methylmalonyl-CoA mutase requires. Member of the vicinal-oxygen-chelate (glyoxalase) superfamily; deficiency causes a usually mild methylmalonic aciduria.

Part 3: AdoCbl-dependent isomerization to succinyl-CoA (terminal step)
(R)-methylmalonyl-CoA to succinyl-CoAReactionmmut_step

Annotons

MMUT: methylmalonyl-CoA mutase (AdoCbl-dependent)
mmut_activity
Participant: Family: Methylmalonyl-CoA mutase family (MMUT)
Family:
Methylmalonyl-CoA mutase family (MMUT)PANTHER:PTHR48101
Representative Members: MMUT (human)UniProtKB:P22033

Function

methylmalonyl-CoA mutase activityGO:0004494
Substrates: (R)-methylmalonyl-CoA adenosylcobalamin (AdoCbl cofactor)
Products: succinyl-CoA

Locations

mitochondrial matrixGO:0005759

Radical (adenosylcobalamin-dependent) carbon-skeleton mutase that rearranges L-methylmalonyl-CoA to succinyl-CoA, feeding propionate carbon into the TCA cycle. Homodimer; requires AdoCbl supplied and maintained by MMAB and MMAA. Deficiency causes mut-type methylmalonic aciduria.

Part 4: adenosylcobalamin cofactor supply and loading (supports the mutase step)
AdoCbl synthesis (MMAB) and MMAA-gated loading onto the mutaseRegulatory Stepadocbl_supply

Annotons

MMAB/cblB: ATP:cob(I)alamin adenosyltransferase
mmab_activity
Participant: Family: Corrinoid adenosyltransferase family (MMAB)
Family:
Corrinoid adenosyltransferase family (MMAB)PANTHER:PTHR12213
Representative Members: MMAB (human)UniProtKB:Q96EY8

Function

cob(I)alamin adenosyltransferase activityGO:0008817
Substrates: cob(I)alamin ATP
Products: adenosylcobalamin (AdoCbl)

Locations

mitochondrial matrixGO:0005759

Homotrimeric adenosyltransferase that makes the AdoCbl cofactor required by MMUT; deficiency causes cblB methylmalonic aciduria.

MMAA/cblA: G3E GTPase chaperone for the mutase
mmaa_activity
Participant: Family: G3E-family (MeaB/ArgK) GTPase metallochaperone (MMAA)
Family:
G3E-family (MeaB/ArgK) GTPase metallochaperone (MMAA)PANTHER:PTHR23408
Representative Members: MMAA (human)UniProtKB:Q8IVH4

Function

GTPase activityGO:0003924

Locations

mitochondrial matrixGO:0005759

Not a methylmalonyl-CoA-metabolizing enzyme: a GTP-dependent metallochaperone that gates transfer of AdoCbl onto MMUT and protects/reactivates the holo-mutase. Deficiency causes cblA methylmalonic aciduria (often B12-responsive).