Propionyl-CoA catabolism (methylmalonyl-CoA pathway)Metabolic Pathwaypropionyl_coa_catabolism
Three-enzyme mitochondrial propionyl-CoA catabolism plus its adenosylcobalamin cofactor-supply system, grounded to the human enzymes PCCA (UniProtKB:P05165) and PCCB (P05166) of propionyl-CoA carboxylase (GO:0004658, EC 6.4.1.3), MCEE (Q96PE7, GO:0004493, EC 5.1.99.1) and MMUT (P22033, GO:0004494, EC 5.4.99.2), with cofactor supply by MMAB (Q96EY8, GO:0008817, EC 2.5.1.17) and the GTPase chaperone MMAA (Q8IVH4, GO:0003924). GO molecular-function terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. Each step uses a PANTHER family selector (generic over paralogs and orthologs) plus a concrete human representative member. Upstream, propionyl-CoA derives from Ile/Val/Met/Thr, odd-chain fatty acids and the cholesterol side chain (see the BCAA catabolism module for the Ile/Val source); downstream, succinyl-CoA is anaplerotic for the TCA cycle. MMAA is deliberately represented as a cofactor chaperone (GTPase), not as a methylmalonyl-CoA-metabolizing enzyme.
Connections
(S)-methylmalonyl-CoA from PCC is epimerised by MCEE.
(R)-methylmalonyl-CoA from MCEE is the substrate of MMUT.
MMAB synthesises AdoCbl and MMAA gates its loading/maintenance on MMUT; without this cofactor supply the mutase step cannot proceed (cblA/cblB methylmalonic aciduria phenocopy mut-type deficiency).
Part 1: biotin-dependent carboxylation (committed step)
propionyl-CoA + HCO3- + ATP to (S)-methylmalonyl-CoA + ADP + PiProtein Complexpcc_step
Annotons
PCCA: propionyl-CoA carboxylase alpha (biotin carboxylase)
pcca_activity
Participant: Family: Biotin-dependent carboxylase alpha/biotin-carboxylase family (PCCA)
Function
propionyl-CoA carboxylase activityGO:0004658
Substrates:
propionyl-CoA
hydrogencarbonate
ATP
biotin (covalent cofactor)
Products:
(S)-methylmalonyl-CoA
ADP
phosphate
Locations
Biotin-carrying alpha subunit: ATP-dependently carboxylates its covalently-bound biotin using bicarbonate, then the carboxyl group is transferred (by PCCB) to propionyl-CoA. PCCA + PCCB assemble as an alpha6-beta6 dodecamer. Loss of function causes propionic acidemia.
PCCB: propionyl-CoA carboxylase beta (carboxyltransferase)
pccb_activity
Participant: Family: Propionyl-CoA carboxylase beta / carboxyltransferase family (PCCB)
Function
propionyl-CoA carboxylase activityGO:0004658
Substrates:
propionyl-CoA
carboxybiotin (from PCCA)
Products:
(S)-methylmalonyl-CoA
Locations
Carboxyltransferase beta subunit: binds propionyl-CoA and transfers the carboxyl group from carboxybiotin to it, producing (S)-methylmalonyl-CoA. Loss of function causes propionic acidemia.
Part 2: epimerization to the mutase substrate
(S)-methylmalonyl-CoA to (R)-methylmalonyl-CoAReactionmcee_step
Annotons
MCEE: methylmalonyl-CoA epimerase
mcee_activity
Participant: Family: Methylmalonyl-CoA epimerase / VOC (glyoxalase) superfamily (MCEE)
Function
methylmalonyl-CoA epimerase activityGO:0004493
Substrates:
(S)-methylmalonyl-CoA
Products:
(R)-methylmalonyl-CoA
Locations
Racemises the PCC product to the (2R)/L-isomer that methylmalonyl-CoA mutase requires. Member of the vicinal-oxygen-chelate (glyoxalase) superfamily; deficiency causes a usually mild methylmalonic aciduria.
Part 3: AdoCbl-dependent isomerization to succinyl-CoA (terminal step)
(R)-methylmalonyl-CoA to succinyl-CoAReactionmmut_step
Annotons
MMUT: methylmalonyl-CoA mutase (AdoCbl-dependent)
mmut_activity
Participant: Family: Methylmalonyl-CoA mutase family (MMUT)
Function
methylmalonyl-CoA mutase activityGO:0004494
Substrates:
(R)-methylmalonyl-CoA
adenosylcobalamin (AdoCbl cofactor)
Products:
succinyl-CoA
Locations
Radical (adenosylcobalamin-dependent) carbon-skeleton mutase that rearranges L-methylmalonyl-CoA to succinyl-CoA, feeding propionate carbon into the TCA cycle. Homodimer; requires AdoCbl supplied and maintained by MMAB and MMAA. Deficiency causes mut-type methylmalonic aciduria.
Part 4: adenosylcobalamin cofactor supply and loading (supports the mutase step)
AdoCbl synthesis (MMAB) and MMAA-gated loading onto the mutaseRegulatory Stepadocbl_supply
Annotons
MMAB/cblB: ATP:cob(I)alamin adenosyltransferase
mmab_activity
Participant: Family: Corrinoid adenosyltransferase family (MMAB)
Function
cob(I)alamin adenosyltransferase activityGO:0008817
Substrates:
cob(I)alamin
ATP
Products:
adenosylcobalamin (AdoCbl)
Locations
Homotrimeric adenosyltransferase that makes the AdoCbl cofactor required by MMUT; deficiency causes cblB methylmalonic aciduria.
MMAA/cblA: G3E GTPase chaperone for the mutase
mmaa_activity
Participant: Family: G3E-family (MeaB/ArgK) GTPase metallochaperone (MMAA)
Function
Locations
Not a methylmalonyl-CoA-metabolizing enzyme: a GTP-dependent metallochaperone that gates transfer of AdoCbl onto MMUT and protects/reactivates the holo-mutase. Deficiency causes cblA methylmalonic aciduria (often B12-responsive).