Generic zymogen protease-activation cascade motif

The minimal, reusable proteolytic-activation motif: an active protease cleaves an inactive zymogen at a specific site, converting it into the next active protease, which in turn activates the following zymogen (and acts on effector substrates). Iterating this step builds the self-amplifying proteolytic cascades of the caspase apoptosis pathway, the complement system, and the coagulation cascade. The motif is gene-free and taxon-neutral: it fixes only the protease and zymogen-substrate roles and the cleavage-activates-the-next topology. Concrete cascades embed it through `conforms_to`, substituting their own protease family and zymogen substrates. Grounded in GO:0031638 (zymogen activation).

MODULE:protease_activation_cascadeDRAFTBiological Processmodules/protease_activation_cascade.yaml
zymogen activationGO:0031638
GO:0031638
zymogen activation
The motif is grounded in zymogen activation: the proteolytic conversion of an inactive protease precursor into its catalytically active form.
GO:0008233
peptidase activity
The acting role in each step is a peptidase that cleaves the downstream zymogen.

Reusable conformance target. A node declares `conforms_to: [{template: protease_activation_cascade}]` when an active protease proteolytically activates a downstream zymogen. The protease class (serine, cysteine/caspase, metallo-) is realization-specific.

4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
2Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:protease_activation_cascade deep-research report alongside the module YAML.

Leaf nodes lacking representative members

3 leaf node(s) with no concrete protein grounding:

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (0/0 grounded genes reviewed)

No concrete UniProt-grounded genes in this module.

Details

Zymogen protease-activation cascadeBiological Processprotease_activation_cascade
zymogen activationGO:0031638

Connections

The upstream protease cleaves and activates the zymogen.
Activation yields the next active protease.
Part 1: upstream active protease
Upstream active proteaseReactioninitiator_protease

An already-active protease cleaves the downstream zymogen at its activation site.

Annotons

peptidase activity
initiator_activity
Participant: Any With Function: peptidase activity
Required Function:
peptidase activityGO:0008233

Function

peptidase activityGO:0008233
Targets: downstream zymogen

Cleaves and activates the downstream zymogen.

Part 2: zymogen activation
Zymogen proteolytic activationReactionzymogen_activation

The inactive zymogen is cleaved into its catalytically active form.

Annotons

activated zymogen
zymogen_node
Participant: Any Participant

Processes

zymogen activationGO:0031638

The protease precursor converted to active protease.

Part 3: downstream effector protease
Newly active downstream proteaseReactioneffector_protease

The newly activated protease acts on its effector substrates and/or activates the next zymogen, propagating the cascade.

Annotons

peptidase activity
effector_activity
Participant: Any With Function: peptidase activity
Required Function:
peptidase activityGO:0008233

Function

peptidase activityGO:0008233

Propagates the cascade and cleaves effector substrates.