Protein prenylation and CAAX processing (FTase/GGTase-I/RabGGTase -> RCE1 -> ICMT)

Prenylation is a lipid post-translational modification that irreversibly attaches a farnesyl (C15) or geranylgeranyl (C20) isoprenoid — supplied as FPP/GGPP from the mevalonate pathway — to C-terminal cysteines of ~300 human proteins (Ras, Rho, Rac, Rab and other small GTPases, nuclear lamins, kinases), anchoring them to membranes and enabling signalling and vesicular trafficking. Three heterodimeric prenyltransferases do the attachment. Farnesyltransferase (FTase = the shared alpha subunit FNTA + the beta subunit FNTB) and geranylgeranyltransferase type I (GGTase-I = FNTA + PGGT1B) recognise a C-terminal CAAX motif directly and prenylate its cysteine — FTase when X is Met/Ser/Gln/Ala, GGTase-I when X is Leu/Phe. Rab geranylgeranyltransferase (GGTase-II / RabGGTase = RABGGTA + RABGGTB) instead double-geranylgeranylates the C-terminal CC/CXC cysteines of Rab GTPases, which must first be presented by the Rab escort protein REP1/REP2 (CHM/CHML). For the CAAX (FTase/GGTase-I) substrates, two further ER-membrane maturation steps follow: the glutamate-type intramembrane protease RCE1 removes the -AAX tripeptide, exposing the prenylcysteine as the new C-terminus, and the SAM-dependent methyltransferase ICMT carboxymethylates that prenylcysteine, maximising hydrophobicity and membrane affinity. The pathway is a major anticancer target (Ras farnesylation; FTIs) and underlies Hutchinson-Gilford progeria (lamin A prenylation). RabGGTase/REP defects cause choroideremia (via CHM), and RCE1/ICMT are Ras-pathway drug targets.

MODULE:protein_prenylation_caax_processingDRAFTMetabolic Pathwaymodules/protein_prenylation_caax_processing.yaml
protein geranylgeranylationGO:0018344 CAAX-box protein processingGO:0071586
GO:0018343
protein farnesylation
FTase (FNTA/FNTB) farnesylates CAAX proteins (GO:0018343).
GO:0018344
protein geranylgeranylation
GGTase-I (FNTA/PGGT1B) and RabGGTase (RABGGTA/RABGGTB) geranylgeranylate CAAX and Rab proteins (GO:0018344).
GO:0071586
CAAX-box protein processing
RCE1 and ICMT carry out post-prenylation CAAX maturation (GO:0071586).
file:human/FNTA/FNTA-ai-review.yaml
FNTA gene review (human)
The shared FTase/GGTase-I alpha subunit (UniProtKB:P49354, GO:0004660/GO:0004662) matches the completed human FNTA review.
file:human/FNTB/FNTB-ai-review.yaml
FNTB gene review (human)
The farnesyltransferase beta (catalytic) subunit (UniProtKB:P49356, GO:0004660) matches the completed human FNTB review.
file:human/PGGT1B/PGGT1B-ai-review.yaml
PGGT1B gene review (human)
The GGTase-I beta (catalytic) subunit (UniProtKB:P53609, GO:0004662) matches the completed human PGGT1B review.
file:human/RABGGTA/RABGGTA-ai-review.yaml
RABGGTA gene review (human)
The RabGGTase alpha subunit (UniProtKB:Q92696, GO:0004663) matches the completed human RABGGTA review.
file:human/RABGGTB/RABGGTB-ai-review.yaml
RABGGTB gene review (human)
The RabGGTase beta (catalytic) subunit (UniProtKB:P53611, GO:0004663) matches the completed human RABGGTB review.
file:human/RCE1/RCE1-ai-review.yaml
RCE1 gene review (human)
The CAAX -AAX endoprotease step (UniProtKB:Q9Y256, GO:0070002) matches the completed human RCE1 review.
file:human/ICMT/ICMT-ai-review.yaml
ICMT gene review (human)
The prenylcysteine carboxyl methylation step (UniProtKB:O60725, GO:0004671) matches the completed human ICMT review.
6Nodes
5Parts
0Variant Sets
0Variants
5Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:protein_prenylation_caax_processing deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (5/5 grounded genes reviewed)

5 complete review(s) · 0 with deep research · 0 missing review · 5 reviewed but lacking deep research

Gene Review Complete Deep research
FNTB P49356
ICMT O60725
PGGT1B P53609
RABGGTB P53611
RCE1 Q9Y256

Details

Context
cytosolGO:0005829 endoplasmic reticulum membraneGO:0005789
Protein prenylation and CAAX processingMetabolic Pathwayprotein_prenylation_caax_processing
protein geranylgeranylationGO:0018344 CAAX-box protein processingGO:0071586
Context
cytosolGO:0005829 endoplasmic reticulum membraneGO:0005789

Protein prenylation and CAAX processing (GO:0018344 + GO:0071586), grounded to seven completed human gene reviews. PRENYLATION (cytosol): FTase = FNTA (P49354, shared alpha, PTHR11129) + FNTB (P49356 PTHR11774, catalytic beta, GO:0004660) farnesylates CAAX (X=M/S/Q/A); GGTase-I = FNTA + PGGT1B (P53609 PTHR11774, GO:0004662) geranylgeranylates CAAX (X=L/F); RabGGTase/GGTase-II = RABGGTA (Q92696 PTHR11129, alpha) + RABGGTB (P53611 PTHR11774, catalytic beta, GO:0004663) double-geranylgeranylates Rab CC/CXC (Rab presented by REP1/REP2=CHM/CHML). FNTA modelled as the shared-alpha adaptor (contributes_to both FTase GO:0005965 and GGTase-I GO:0005953 complexes); the beta subunits carry the catalytic Zn2+. CAAX MATURATION (ER membrane, FTase/GGTase-I substrates only): RCE1 (Q9Y256 PTHR13046, GO:0070002 glutamate-type intramembrane protease — NOT metallo/cysteine; several obsolete protease terms corrected) removes -AAX; ICMT (O60725 PTHR12714, GO:0004671) carboxymethylates the prenylcysteine (SAM). FPP/GGPP donors come from the mevalonate/isoprenoid pathway (FDPS/GGPS1, separate). Recurrent curation: bare protein-binding IPIs over-annotated (mostly the cognate alpha/beta subunit or REP1); the choroideremia (visual perception) annotations belong to CHM/REP1, not the RabGGTase subunits (flagged). GO term ids/labels verified against the local go.db. Anticancer FTIs (Ras), Hutchinson-Gilford progeria (lamin A), choroideremia (CHM/REP1).

Connections

farnesylation -> caax_proteolysis Provides Input For
Farnesylated CAAX proteins are processed by RCE1 (-AAX removal).
GGTase-I-modified CAAX proteins are processed by RCE1 (-AAX removal).
The prenylcysteine exposed by RCE1 is carboxymethylated by ICMT (final maturation).
Part 1: farnesylation (CAAX, X=M/S/Q/A)
Farnesyltransferase (FNTA alpha + FNTB beta)Reactionfarnesylation

Annotons

FNTB (+FNTA): protein farnesyltransferase
fntb_activity
Participant: Family: FNTB / prenyltransferase beta-subunit family
Family:
FNTB / prenyltransferase beta-subunit familyPANTHER:PTHR11774
Representative Members: FNTB (human; FTase beta/catalytic)UniProtKB:P49356

Function

protein farnesyltransferase activityGO:0004660
Substrates: CAAX protein (X = Met/Ser/Gln/Ala; e.g. H/N/K-Ras, lamins) farnesyl diphosphate (FPP; Zn2+)
Products: S-farnesyl-cysteine CAAX protein diphosphate

Locations

cytosolGO:0005829

Farnesylate the cysteine of CAAX (X=M/S/Q/A) proteins (FPP donor).

Part 2: geranylgeranylation type I (CAAX, X=L/F)
Geranylgeranyltransferase type I (FNTA alpha + PGGT1B beta)Reactiongeranylgeranylation_I

Annotons

PGGT1B (+FNTA): CAAX-protein geranylgeranyltransferase
pggt1b_activity
Participant: Family: PGGT1B / prenyltransferase beta-subunit family
Family:
PGGT1B / prenyltransferase beta-subunit familyPANTHER:PTHR11774
Representative Members: PGGT1B (human; GGTase-I beta/catalytic)UniProtKB:P53609

Function

CAAX-protein geranylgeranyltransferase activityGO:0004662
Substrates: CAAX protein (X = Leu/Phe; e.g. Rho, Rac, Cdc42, Rap) geranylgeranyl diphosphate (GGPP; Zn2+)
Products: S-geranylgeranyl-cysteine CAAX protein diphosphate

Locations

cytosolGO:0005829

Geranylgeranylate the cysteine of CAAX (X=L/F) proteins (GGPP donor).

Part 3: Rab geranylgeranylation (CC/CXC)
Rab geranylgeranyltransferase (RABGGTA alpha + RABGGTB beta)Reactiongeranylgeranylation_II

Annotons

RABGGTB (+RABGGTA): Rab geranylgeranyltransferase
rabggt_activity
Participant: Family: RABGGT / prenyltransferase beta-subunit family
Family:
RABGGT / prenyltransferase beta-subunit familyPANTHER:PTHR11774
Representative Members: RABGGTB (human; RabGGTase beta/catalytic)UniProtKB:P53611

Function

Rab geranylgeranyltransferase activityGO:0004663
Substrates: Rab GTPase (C-terminal CC/CXC; presented by REP1/REP2 = CHM/CHML) geranylgeranyl diphosphate (GGPP; usually 2x)
Products: di-geranylgeranyl-Rab GTPase diphosphate

Locations

cytosolGO:0005829

Double-geranylgeranylate Rab GTPase CC/CXC cysteines (via REP escort).

Part 4: CAAX -AAX endoproteolysis
CAAX endoprotease (RCE1)Reactioncaax_proteolysis

Annotons

RCE1: prenyl-protein CAAX endopeptidase
rce1_activity
Participant: Family: RCE1 / prenyl-protein CAAX endoprotease (U48) family
Family:
RCE1 / prenyl-protein CAAX endoprotease (U48) familyPANTHER:PTHR13046
Representative Members: RCE1 (human)UniProtKB:Q9Y256

Function

glutamic-type CAAX endopeptidase activityGO:0070002
Substrates: prenylated CAAX protein (farnesyl-/geranylgeranyl-cysteine-AAX)
Products: prenylcysteine-terminated protein AAX tripeptide

Locations

endoplasmic reticulum membraneGO:0005789

Cleave the -AAX tripeptide from prenylated CAAX proteins (ER).

Part 5: prenylcysteine carboxymethylation
Isoprenylcysteine carboxyl methyltransferase (ICMT)Reactionprenylcysteine_methylation

Annotons

ICMT: prenylcysteine carboxyl methyltransferase
icmt_activity
Participant: Family: ICMT / isoprenylcysteine carboxyl methyltransferase family
Family:
ICMT / isoprenylcysteine carboxyl methyltransferase familyPANTHER:PTHR12714
Representative Members: ICMT (human)UniProtKB:O60725

Function

protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activityGO:0004671
Substrates: C-terminal prenylcysteine protein S-adenosyl-L-methionine
Products: prenylcysteine methyl ester protein S-adenosyl-L-homocysteine

Locations

endoplasmic reticulum membraneGO:0005789

Carboxymethylate the C-terminal prenylcysteine (final CAAX maturation step).