S-adenosylmethionine (SAM) cycle (SAM arm)Metabolic Pathwaysam_cycle
The SAM arm of the methionine cycle grounded to the human enzymes MAT1A (UniProtKB:Q00266, GO:0004478, EC 2.5.1.6), GNMT (Q14749, GO:0017174, EC 2.1.1.20) and AHCY (P23526, GO:0004013, EC 3.13.2.1). GO molecular-function terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. The MAT node uses a PANTHER family selector (PTHR11964) generic over MAT1A (liver) and MAT2A (extrahepatic); GNMT and AHCY use their own family selectors. GNMT is the representative transmethylation step, but SAM is used by hundreds of SAM-dependent methyltransferases (DNA/protein/small-molecule), all producing SAH that AHCY must clear; GNMT's special role is regulatory (buffering the SAM:SAH ratio, inhibited by 5-methyl-THF). This module is the concrete, human-gene-grounded SAM-arm complement to the pre-existing taxon-neutral abstract methionine_cycle module (which encodes the SBO/ChEBI regulatory wiring, e.g. SAM competitively inhibiting MAT-I but allosterically activating MAT-III); the fate of the homocysteine produced here — remethylation to methionine (MTR/BHMT, closing the cycle) or transsulfuration to cysteine (CBS) — is curated in the homocysteine_metabolism module (CTH/MTHFR/MTR/MTRR/MMACHC + CBS). Disorders: all three enzymes cause hypermethioninemia — MAT1A (MAT I/III deficiency), GNMT (GNMT deficiency), AHCY (SAHH deficiency).
Connections
SAM from MAT is the methyl donor consumed by GNMT (and other methyltransferases).
The SAH produced by transmethylation is hydrolysed by AHCY.
Part 1: SAM synthesis
L-methionine + ATP to S-adenosyl-L-methionine + Pi + PPiReactionmat_step
Annotons
MAT1A/MAT2A: methionine adenosyltransferase
mat_activity
Participant: Family: Methionine adenosyltransferase family (MAT1A/MAT2A)
Function
methionine adenosyltransferase activityGO:0004478
Substrates:
L-methionine
ATP
Products:
S-adenosyl-L-methionine (SAM)
phosphate + diphosphate
Locations
Synthesises SAM, the universal methyl donor and committed entry to the cycle. MAT1A (liver MAT-I/MAT-III) deficiency -> hypermethioninemia; MAT2A is the extrahepatic isoform. (SAM oppositely regulates MAT-I vs MAT-III — see the abstract methionine_cycle module's regulatory layer.)
Part 2: transmethylation (SAM -> SAH; SAM:SAH-ratio regulation)
S-adenosyl-L-methionine + glycine to S-adenosyl-L-homocysteine + sarcosineReactiongnmt_step
Annotons
GNMT: glycine N-methyltransferase (regulatory SAM-consumer)
gnmt_activity
Participant: Family: Glycine N-methyltransferase family (GNMT)
Function
glycine N-methyltransferase activityGO:0017174
Substrates:
S-adenosyl-L-methionine (SAM)
glycine
Products:
S-adenosyl-L-homocysteine (SAH)
sarcosine (N-methylglycine)
Locations
Representative and regulatory SAM-dependent methyltransferase: methylates glycine to sarcosine, disposing of excess SAM to buffer the SAM:SAH ratio (cellular methylation capacity). All SAM-dependent methyltransferases feed SAH to the next step. GNMT deficiency -> hypermethioninemia.
Part 3: SAH hydrolysis (relieves methyltransferase inhibition)
S-adenosyl-L-homocysteine + H2O to L-homocysteine + adenosineReactionahcy_step
Annotons
AHCY: adenosylhomocysteinase (SAH hydrolase)
ahcy_activity
Participant: Family: Adenosylhomocysteinase family (AHCY)
Function
adenosylhomocysteinase activityGO:0004013
Substrates:
S-adenosyl-L-homocysteine (SAH)
water
Products:
L-homocysteine
adenosine
Locations
Hydrolyses SAH to homocysteine + adenosine, clearing the SAH generated by every methyltransferase (SAH is a potent product-inhibitor). Its product homocysteine re-enters remethylation (MTR) or transsulfuration (CBS). SAHH deficiency -> hypermethioninemia with elevated SAH/SAM.