Budding yeast (S. cerevisiae) high-osmolarity (Ssk2-Pbs2-Hog1) MAPK cascade module

A decomposition of the Saccharomyces cerevisiae high-osmolarity glycerol (HOG) MAP kinase cascade, the osmostress-activated fungal realization of the generic three-tier MAP kinase relay (MODULE:mapk_relay). High external osmolarity is sensed by two upstream branches - the Sln1 two-component phosphorelay (which derepresses the MAP3Ks Ssk2/Ssk22) and the Sho1 branch (which routes through Ste11) - both converging on the single MAP2K Pbs2, which dually phosphorylates the MAPK Hog1 on its TGY activation-loop motif. Active Hog1 translocates to the nucleus and activates transcription factors (Hot1, Msn2/Msn4, Sko1) that induce glycerol-biosynthesis and stress-response genes restoring osmotic balance. The kinase relay - Ssk2/Ssk22 -> Pbs2 -> Hog1 - is declared as an inner bundle that `conforms_to` mapk_relay, while the osmosensing input and the Hog1 transcriptional output are this cascade's free extensions around the conforming core. Grounded in GO:0007231 (osmosensory signaling pathway).

MODULE:scer_hog1_cascadeDRAFTSignaling Pathwaymodules/scer_hog1_cascade.yaml
osmosensory signaling pathwayGO:0007231
GO:0007231
osmosensory signaling pathway
The module is grounded in the GO biological process term for osmosensory signaling, the process driven by the yeast HOG pathway.
GO:0000165
MAPK cascade
The relay tier conforms to the generic three-tier MAPK cascade motif (MODULE:mapk_relay).

This module is the Saccharomyces cerevisiae HOG-pathway realization of the generic three-tier MAP kinase relay (MODULE:mapk_relay), and embeds two nested conforming bundles: the inner `sln1_phosphorelay` node bundles the Sln1 -> Ypd1 -> Ssk1 tiers and conforms to MODULE:two_component_relay, and the inner `hog1_relay` node bundles the Ssk2/Ssk22 -> Pbs2 -> Hog1 tiers and conforms to mapk_relay. The downstream Hog1 transcriptional output is this cascade's free extension around the conforming cores. Representative UniProt members (Sln1 P39928, Ypd1 Q07688, Ssk1 Q07084, Ssk2 P53599, Pbs2 P08018, Hog1 P32485) were verified against UniProt. No matching UniProt-seed PAINT IBD rows were found in the local interpro/panther cache for these S. cerevisiae exemplars, so this species-specific cascade is not assigned a PTN ancestry anchor in this pass.

10Nodes
9Parts
0Variant Sets
0Variants
7Annotons
6Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:scer_hog1_cascade deep-research report alongside the module YAML.

Leaf nodes lacking representative members

1 leaf node(s) with no concrete protein grounding:

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (0/6 grounded genes reviewed)

0 complete review(s) · 0 with deep research · 6 missing review · 0 reviewed but lacking deep research

Gene Review Complete Deep research
Pbs2 P08018
Hog1 P32485
Sln1 P39928
Ssk2 P53599
Ssk1 Q07084
Ypd1 Q07688

Details

Context
Saccharomyces cerevisiaeNCBITaxon:4932
cytosolGO:0005829 nucleusGO:0005634
Budding yeast (S. cerevisiae) high-osmolarity (Ssk2-Pbs2-Hog1) cascadeSignaling Pathwayscer_hog1_cascade
osmosensory signaling pathwayGO:0007231
Context
Saccharomyces cerevisiaeNCBITaxon:4932
cytosolGO:0005829 nucleusGO:0005634

Connections

sln1_phosphorelay -> hog1_relay Provides Input For
The Sln1 phosphorelay (via unphosphorylated Ssk1) activates the Ssk2/Ssk22 MAP3K tier.
hog1_relay -> hog1_output Provides Input For
Active Hog1 drives the osmostress transcriptional program.
Part 1: Sln1 phosphorelay osmosensing input (conforms to two_component_relay)
Sln1 -> Ypd1 -> Ssk1 osmosensing phosphorelaySignaling Pathwaysln1_phosphorelay

High external osmolarity is sensed by the Sln1 two-component phosphorelay: the sensor histidine kinase Sln1 transfers a phosphoryl group through the Hpt intermediate Ypd1 to the response regulator Ssk1. Under high osmolarity Sln1 is inactivated, so Ssk1 accumulates unphosphorylated and activates the Ssk2/Ssk22 MAP3K tier (a derepression logic). A parallel Sho1 branch (via Ste11) also feeds Pbs2. This bundle is an instance of the generic two-component phosphorelay.

Connections

Sln1 transfers its phosphoryl group to Ypd1.
ypd1_hpt -> ssk1_rr Causes
Ypd1 delivers the phosphoryl group to Ssk1.
Part 1: sensor kinase tier (Sln1)
Sln1 sensor histidine kinase autophosphorylationReactionsln1_sensor

The osmosensor histidine kinase Sln1 autophosphorylates and feeds the relay.

Annotons

Sln1 phosphorelay sensor kinase activity
sln1_activity
Participant: Gene Product: Sln1
Gene Product:
Sln1UniProtKB:P39928 Budding-yeast osmosensor histidine kinase.

Function

phosphorelay sensor kinase activityGO:0000155
Targets: Ypd1

Senses osmolarity and initiates the phosphorelay.

Part 2: Hpt tier (Ypd1)
Ypd1 histidine phosphotransferReactionypd1_hpt

The Hpt intermediate Ypd1 shuttles the phosphoryl group from Sln1 to Ssk1.

Annotons

Ypd1 histidine phosphotransfer kinase activity
ypd1_activity
Participant: Gene Product: Ypd1
Gene Product:
Ypd1UniProtKB:Q07688 Budding-yeast phosphorelay intermediate (Hpt) protein.

Function

histidine phosphotransfer kinase activityGO:0009927
Targets: Ssk1

Relays the phosphoryl group from Sln1 to Ssk1.

Part 3: response regulator tier (Ssk1)
Ssk1 response regulatorReactionssk1_rr

The response regulator Ssk1 receives the phosphoryl group; its unphosphorylated (high-osmolarity) form activates the Ssk2/Ssk22 MAP3K tier.

Annotons

Ssk1 phosphorelay response regulator activity
ssk1_activity
Participant: Gene Product: Ssk1
Gene Product:
Ssk1UniProtKB:Q07084 Budding-yeast osmolarity two-component response regulator.

Function

phosphorelay response regulator activityGO:0000156

Processes

osmosensory signaling pathwayGO:0007231

Couples the phosphorelay state to the Ssk2/Ssk22 MAP3K tier.

Part 2: Hog1 kinase relay (conforms to mapk_relay)
Osmostress kinase relay (Ssk2/Ssk22 -> Pbs2 -> Hog1)Reactionhog1_relay

The three-tier kinase relay of the HOG cascade: the MAP3K Ssk2 (with paralog Ssk22) phosphorylates the MAP2K Pbs2, which dually phosphorylates the MAPK Hog1 on its TGY activation-loop motif.

Connections

Ssk2/Ssk22 phosphorylates and activates Pbs2.
Pbs2 dually phosphorylates Hog1.
Part 1: MAP3K tier (Ssk2/Ssk22)
Ssk2/Ssk22 MAP kinase kinase kinase activationReactionhog1_map3k

The MAP3K Ssk2 (and its paralog Ssk22), derepressed by the Sln1 phosphorelay, phosphorylates and activates Pbs2.

Annotons

Ssk2/Ssk22 MAP3K activity
hog1_map3k_activity
Participant: Family: Ssk2/Ssk22 osmostress MAP3Ks
Family:
Ssk2/Ssk22 osmostress MAP3Ks Budding-yeast MAP3Ks of the HOG pathway (Sln1 branch).
Representative Members: Ssk2UniProtKB:P53599

Function

MAP kinase kinase kinase activityGO:0004709
Targets: Pbs2

Top kinase tier; activates Pbs2.

Part 2: MAP2K tier (Pbs2)
Pbs2 MAP kinase kinase activationReactionhog1_map2k

The dual-specificity MAP2K Pbs2, which also scaffolds the pathway, phosphorylates Hog1 on both threonine and tyrosine of its TGY motif.

Annotons

Pbs2 MAP2K activity
hog1_map2k_activity
Participant: Gene Product: Pbs2
Gene Product:
Pbs2UniProtKB:P08018 Budding-yeast MAP2K and scaffold of the HOG pathway.

Function

MAP kinase kinase activityGO:0004708
Targets: Hog1 TGY motif

Middle kinase tier; dual-specificity activation of Hog1.

Part 3: MAPK tier (Hog1)
Hog1 MAP kinase activationReactionhog1_mapk

Dually phosphorylated Hog1 becomes an active proline-directed serine/threonine kinase and translocates to the nucleus to act on osmostress substrates.

Annotons

Hog1 MAP kinase activity
hog1_mapk_activity
Participant: Gene Product: Hog1
Gene Product:
Hog1UniProtKB:P32485 The terminal effector kinase of the yeast HOG cascade (p38 counterpart).

Function

MAP kinase activityGO:0004707

Locations

nucleusGO:0005634

Effector kinase transducing the osmostress signal to substrates.

Part 3: Hog1 transcriptional output
Hog1 effector and osmostress transcriptional outputRegulatory Stephog1_output

Nuclear Hog1 activates transcription factors (Hot1, Msn2/Msn4, Sko1) that induce glycerol-biosynthesis (e.g. GPD1) and general stress-response genes, restoring osmotic balance; Hog1 also has cytoplasmic targets controlling cell-cycle and translation.

Annotons

Hog1 substrate phosphorylation and stress transcription
hog1_substrate_output
Participant: Any With Function: MAP kinase activity
Required Function:
MAP kinase activityGO:0004707

Processes

positive regulation of transcription by RNA polymerase IIGO:0045944

Converts Hog1 activity into the osmostress gene program.