Sialic acid (N-acetylneuraminate) metabolism (biosynthesis, activation, transport, catabolism)

Sialic acids (in humans chiefly N-acetylneuraminate, Neu5Ac) are the negatively charged nine-carbon sugars that cap most cell-surface and secreted glycoconjugates, governing cell-cell recognition, receptor masking, serum-protein half-life and pathogen interactions. Their metabolism forms a compact cytosol-to- organelle pathway. Biosynthesis starts with the bifunctional, feedback-controlled enzyme GNE, whose epimerase domain converts UDP-N-acetylglucosamine to N-acetylmannosamine (ManNAc) and whose kinase domain phosphorylates ManNAc to ManNAc-6-phosphate. The sialic-acid synthase NANS then condenses ManNAc-6-P with phosphoenolpyruvate to N-acetylneuraminate-9-phosphate, which the HAD phosphatase NANP dephosphorylates to free Neu5Ac. In the nucleus, CMAS activates Neu5Ac with CTP to the sugar-nucleotide donor CMP-Neu5Ac; the Golgi antiporter SLC35A1 imports CMP-Neu5Ac into the Golgi lumen (in exchange for CMP) to supply the sialyltransferases that decorate glycans. CMP-Neu5Ac feedback-inhibits GNE, keeping flux matched to demand. On the catabolic side, the lysosomal sialidase NEU1 (acting within the CTSA/GLB1 lysosomal multienzyme complex) removes terminal sialic acids from glycoconjugates during turnover, and the cytosolic aldolase NPL cleaves free Neu5Ac to ManNAc + pyruvate, recycling the amino sugar. Inherited defects at nearly every step cause disease: GNE myopathy and sialuria (GNE), NANS-CDG, SLC35A1-CDG (CDG-IIf), sialidosis (NEU1) and an NPL-related myopathy — several of which are amenable to ManNAc / sialic-acid supplementation.

MODULE:sialic_acid_metabolismDRAFTMetabolic Pathwaymodules/sialic_acid_metabolism.yaml
N-acetylneuraminate biosynthetic processGO:0046380 N-acetylneuraminate catabolic processGO:0019262
GO:0046380
N-acetylneuraminate biosynthetic process
GNE, NANS, NANP and CMAS carry out sialic acid (Neu5Ac) biosynthesis and activation (GO:0046380).
GO:0019262
N-acetylneuraminate catabolic process
NEU1 and NPL carry out sialic acid catabolism/recycling (GO:0019262).
file:human/GNE/GNE-ai-review.yaml
GNE gene review (human)
The UDP-GlcNAc->ManNAc->ManNAc-6-P step (UniProtKB:Q9Y223, GO:0008761/GO:0009384) matches the completed human GNE review.
file:human/NANS/NANS-ai-review.yaml
NANS gene review (human)
The ManNAc-6-P + PEP -> Neu5Ac-9-P step (UniProtKB:Q9NR45, GO:0047444) matches the completed human NANS review.
file:human/NANP/NANP-ai-review.yaml
NANP gene review (human)
The Neu5Ac-9-P -> Neu5Ac dephosphorylation step (UniProtKB:Q8TBE9, GO:0050124) matches the completed human NANP review.
file:human/CMAS/CMAS-ai-review.yaml
CMAS gene review (human)
The Neu5Ac + CTP -> CMP-Neu5Ac activation step (UniProtKB:Q8NFW8, GO:0008781) matches the completed human CMAS review.
file:human/SLC35A1/SLC35A1-ai-review.yaml
SLC35A1 gene review (human)
The Golgi CMP-Neu5Ac import step (UniProtKB:P78382, GO:0005456) matches the completed human SLC35A1 review.
file:human/NEU1/NEU1-ai-review.yaml
NEU1 gene review (human)
The lysosomal desialylation step (UniProtKB:Q99519, GO:0004308) matches the completed human NEU1 review.
file:human/NPL/NPL-ai-review.yaml
NPL gene review (human)
The Neu5Ac -> ManNAc + pyruvate recycling step (UniProtKB:Q9BXD5, GO:0008747) matches the completed human NPL review.
8Nodes
7Parts
0Variant Sets
0Variants
7Annotons
6Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:sialic_acid_metabolism deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (7/7 grounded genes reviewed)

7 complete review(s) · 0 with deep research · 0 missing review · 7 reviewed but lacking deep research

Gene Review Complete Deep research
CMAS Q8NFW8
GNE Q9Y223
NANP Q8TBE9
NANS Q9NR45
NEU1 Q99519
NPL Q9BXD5
SLC35A1 P78382

Details

Context
cytosolGO:0005829 nucleusGO:0005634 Golgi membraneGO:0000139 lysosomal lumenGO:0043202
Sialic acid (N-acetylneuraminate) metabolismMetabolic Pathwaysialic_acid_metabolism
N-acetylneuraminate biosynthetic processGO:0046380 N-acetylneuraminate catabolic processGO:0019262
Context
cytosolGO:0005829 nucleusGO:0005634 Golgi membraneGO:0000139 lysosomal lumenGO:0043202

Sialic acid (Neu5Ac) metabolism (GO:0046380 biosynthesis + GO:0019262 catabolism), grounded to seven completed human gene reviews, each a distinct PANTHER family. BIOSYNTHESIS (cytosol->nucleus): GNE (Q9Y223 PTHR18964, bifunctional GO:0008761 epimerase + GO:0009384 ManNAc kinase, rate-limiting, CMP- Neu5Ac-feedback-inhibited; GNE myopathy/sialuria) -> NANS (Q9NR45 PTHR42966, GO:0047444 — the PHOSPHATE synthase EC 2.5.1.57, NOT GO:0050462; NANS-CDG) -> NANP (Q8TBE9 PTHR46470, GO:0050124 HAD phosphatase + Mg) -> CMAS (Q8NFW8 PTHR21485, GO:0008781 nuclear cytidylyltransferase making the CMP-Neu5Ac donor). TRANSPORT: SLC35A1 (P78382 PTHR10231, GO:0005456 Golgi CMP-Neu5Ac/CMP antiporter; SLC35A1-CDG/CDG-IIf). CATABOLISM: NEU1 (Q99519 PTHR10628, GO:0004308 lysosomal exo-alpha-sialidase in the CTSA/GLB1 complex; sialidosis) -> NPL (Q9BXD5 PTHR12128, GO:0008747 cytosolic aldolase, Neu5Ac->ManNAc+pyruvate, recycling). The CMAS product CMP-Neu5Ac feedback-inhibits GNE (modelled as NEGATIVELY_REGULATES). ManNAc from NPL and ManNAc/sialic-acid supplementation can bypass upstream GNE/NANS/NPL defects therapeutically. GNPNAT1 (hexosamine/UDP-GlcNAc synthesis, upstream) and the sialyltransferases (downstream) are separate modules. GO term ids/labels verified against the local go.db.

Connections

GNE produces ManNAc-6-phosphate, the substrate condensed with PEP by NANS.
The Neu5Ac-9-phosphate made by NANS is dephosphorylated by NANP.
The free Neu5Ac released by NANP is activated by CMAS to CMP-Neu5Ac.
The CMP-Neu5Ac made by CMAS is imported into the Golgi by SLC35A1 for sialyltransferases.
CMP-Neu5Ac (the CMAS product) allosterically feedback-inhibits the GNE epimerase, matching flux to demand.
The free Neu5Ac released by lysosomal NEU1 is cleaved by cytosolic NPL to ManNAc + pyruvate.
Part 1: ManNAc(-6-P) synthesis (bifunctional, rate-limiting)
UDP-GlcNAc 2-epimerase / ManNAc kinase (GNE)Reactionudpglcnac_to_mannac6p

Annotons

GNE: bifunctional UDP-GlcNAc 2-epimerase / ManNAc kinase
gne_activity
Participant: Family: GNE / bifunctional UDP-GlcNAc 2-epimerase-kinase family
Family:
GNE / bifunctional UDP-GlcNAc 2-epimerase-kinase familyPANTHER:PTHR18964
Representative Members: GNE (human)UniProtKB:Q9Y223

Function

UDP-N-acetylglucosamine 2-epimerase + N-acylmannosamine kinase activityGO:0008761
Substrates: UDP-N-acetyl-D-glucosamine ATP (kinase domain, GO:0009384)
Products: N-acetyl-D-mannosamine 6-phosphate (via ManNAc) UDP + ADP

Locations

cytosolGO:0005829

Makes ManNAc-6-phosphate from UDP-GlcNAc (epimerase + kinase).

Part 2: sialic acid synthase
N-acetylneuraminate-9-phosphate synthase (NANS)Reactionmannac6p_to_neu5ac9p

Annotons

NANS: sialic acid (Neu5Ac-9-P) synthase
nans_activity
Participant: Family: NANS / N-acetylneuraminate-9-phosphate synthase family
Family:
NANS / N-acetylneuraminate-9-phosphate synthase familyPANTHER:PTHR42966
Representative Members: NANS (human)UniProtKB:Q9NR45

Function

N-acylneuraminate-9-phosphate synthase activityGO:0047444
Substrates: N-acetyl-D-mannosamine 6-phosphate phosphoenolpyruvate (PEP)
Products: N-acetylneuraminate 9-phosphate (Neu5Ac-9-P) phosphate

Locations

cytosolGO:0005829

Condenses ManNAc-6-P + PEP to Neu5Ac-9-phosphate.

Part 3: Neu5Ac-9-P dephosphorylation
N-acylneuraminate-9-phosphatase (NANP)Reactionneu5ac9p_to_neu5ac

Annotons

NANP: Neu5Ac-9-phosphatase (HAD)
nanp_activity
Participant: Family: NANP / HAD N-acylneuraminate-9-phosphatase family
Family:
NANP / HAD N-acylneuraminate-9-phosphatase familyPANTHER:PTHR46470
Representative Members: NANP (human)UniProtKB:Q8TBE9

Function

N-acylneuraminate-9-phosphatase activityGO:0050124
Substrates: N-acetylneuraminate 9-phosphate (Mg2+)
Products: N-acetylneuraminate (free Neu5Ac) phosphate

Locations

cytosolGO:0005829

Dephosphorylates Neu5Ac-9-P to free Neu5Ac.

Part 4: sialic acid activation (CMP donor)
CMP-N-acetylneuraminate synthetase (CMAS)Reactionneu5ac_to_cmpneu5ac

Annotons

CMAS: CMP-sialic acid synthetase (nuclear)
cmas_activity
Participant: Family: CMAS / N-acylneuraminate cytidylyltransferase family
Family:
CMAS / N-acylneuraminate cytidylyltransferase familyPANTHER:PTHR21485
Representative Members: CMAS (human)UniProtKB:Q8NFW8

Function

N-acylneuraminate cytidylyltransferase activityGO:0008781
Substrates: N-acetylneuraminate (Neu5Ac) CTP
Products: CMP-N-acetylneuraminate (CMP-Neu5Ac, donor) diphosphate

Locations

nucleusGO:0005634

Activates Neu5Ac to CMP-Neu5Ac (sugar-nucleotide donor).

Part 5: Golgi import of the CMP-Neu5Ac donor
CMP-sialic acid transporter (SLC35A1)Reactioncmpneu5ac_golgi_import

Annotons

SLC35A1: CMP-Neu5Ac/CMP Golgi antiporter
slc35a1_activity
Participant: Family: SLC35A1 / nucleotide-sugar transporter family
Family:
SLC35A1 / nucleotide-sugar transporter familyPANTHER:PTHR10231
Representative Members: SLC35A1 (human)UniProtKB:P78382

Function

CMP-N-acetylneuraminate transmembrane transporter activityGO:0005456
Substrates: CMP-N-acetylneuraminate (cytosolic)
Products: CMP-N-acetylneuraminate (Golgi lumen; antiport for CMP)

Locations

Golgi membraneGO:0000139

Imports CMP-Neu5Ac into the Golgi lumen (antiport with CMP).

Part 6: lysosomal desialylation (catabolism)
Lysosomal sialidase (NEU1)Reactionlysosomal_desialylation

Annotons

NEU1: lysosomal exo-alpha-sialidase
neu1_activity
Participant: Family: NEU / sialidase (neuraminidase) family
Family:
NEU / sialidase (neuraminidase) familyPANTHER:PTHR10628
Representative Members: NEU1 (human)UniProtKB:Q99519

Function

exo-alpha-sialidase activityGO:0004308
Substrates: sialylated glycoproteins / glycolipids / oligosaccharides
Products: free N-acetylneuraminate + desialylated glycoconjugate

Locations

lysosomal lumenGO:0043202

Removes terminal sialic acid from glycoconjugates (lysosome).

Part 7: free sialic acid cleavage / recycling
N-acetylneuraminate lyase (NPL)Reactionneu5ac_cleavage

Annotons

NPL: N-acetylneuraminate pyruvate lyase (aldolase)
npl_activity
Participant: Family: NPL / N-acetylneuraminate lyase family
Family:
NPL / N-acetylneuraminate lyase familyPANTHER:PTHR12128
Representative Members: NPL (human)UniProtKB:Q9BXD5

Function

N-acetylneuraminate lyase activityGO:0008747
Substrates: N-acetylneuraminate (free Neu5Ac)
Products: N-acetyl-D-mannosamine (ManNAc) pyruvate

Locations

cytosolGO:0005829

Cleaves free Neu5Ac to ManNAc + pyruvate (recycling).