Sphingomyelin cycle (ceramide <-> sphingomyelin interconversion)

Sphingomyelin (SM) is the most abundant sphingolipid of the plasma membrane and a defining component of lipid rafts and the myelin sheath. The "sphingomyelin cycle" is the reversible interconversion of SM and ceramide, which couples membrane-lipid homeostasis to ceramide/diacylglycerol signalling. In the synthetic direction the sphingomyelin synthases SGMS1 (trans-Golgi) and SGMS2 (plasma membrane) transfer a phosphocholine head group from phosphatidylcholine (PC) to ceramide, producing SM + diacylglycerol (DAG) — simultaneously consuming the pro-apoptotic lipid ceramide and generating the pro-mitogenic lipid DAG. In the hydrolytic direction, sphingomyelinases (SM phosphodiesterases) cleave SM back to ceramide + phosphocholine, generating the ceramide second messenger. Human cells use several, distinguished by pH optimum and location: the lysosomal acid sphingomyelinase SMPD1 (turnover and the ASMase/ceramide stress pathway; Niemann-Pick A/B on deficiency), and the Mg2+-dependent neutral sphingomyelinases SMPD3 (nSMase2, the major stress-responsive plasma-membrane/Golgi enzyme controlling ceramide signalling, exosome secretion and bone mineralization), SMPD4 (nSMase3, ER/Golgi/nuclear-envelope) and SMPD2 (nSMase1, ER; note its preferred cellular substrate is lyso-platelet-activating factor, so its bulk-SMase role is limited). The ceramide produced feeds the ceramidase/sphingosine-1-phosphate rheostat and re-acylation pathways. Inherited defects illustrate the pathway: SMPD1 Niemann-Pick disease, SGMS2 and SMPD3 skeletal dysplasias, and SMPD4 a neurodevelopmental disorder with microcephaly.

MODULE:sphingomyelin_cycleDRAFTMetabolic Pathwaymodules/sphingomyelin_cycle.yaml
sphingomyelin biosynthetic processGO:0006686 sphingomyelin catabolic processGO:0006685
GO:0006686
sphingomyelin biosynthetic process
SGMS1 and SGMS2 synthesise sphingomyelin from ceramide + PC (GO:0006686).
GO:0006685
sphingomyelin catabolic process
SMPD1/SMPD2/SMPD3/SMPD4 hydrolyse sphingomyelin to ceramide + phosphocholine (GO:0006685).
file:human/SGMS1/SGMS1-ai-review.yaml
SGMS1 gene review (human)
The Golgi ceramide + PC -> SM + DAG step (UniProtKB:Q86VZ5, GO:0033188) matches the completed human SGMS1 review.
file:human/SGMS2/SGMS2-ai-review.yaml
SGMS2 gene review (human)
The plasma-membrane ceramide + PC -> SM + DAG step (UniProtKB:Q8NHU3, GO:0033188) matches the completed human SGMS2 review.
file:human/SMPD1/SMPD1-ai-review.yaml
SMPD1 gene review (human)
The lysosomal acid SM hydrolysis step (UniProtKB:P17405, GO:0004767) matches the completed human SMPD1 review.
file:human/SMPD2/SMPD2-ai-review.yaml
SMPD2 gene review (human)
The ER neutral SMase-1 (nSMase1) step (UniProtKB:O60906, GO:0004767) matches the completed human SMPD2 review.
file:human/SMPD3/SMPD3-ai-review.yaml
SMPD3 gene review (human)
The plasma-membrane/Golgi neutral SMase-2 (nSMase2) step (UniProtKB:Q9NY59, GO:0004767) matches the completed human SMPD3 review.
file:human/SMPD4/SMPD4-ai-review.yaml
SMPD4 gene review (human)
The ER/Golgi/nuclear-envelope neutral SMase-3 (nSMase3) step (UniProtKB:Q9NXE4, GO:0004767) matches the completed human SMPD4 review.
5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:sphingomyelin_cycle deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (6/6 grounded genes reviewed)

6 complete review(s) · 0 with deep research · 0 missing review · 6 reviewed but lacking deep research

Gene Review Complete Deep research
SGMS1 Q86VZ5
SGMS2 Q8NHU3
SMPD1 P17405
SMPD2 O60906
SMPD3 Q9NY59
SMPD4 Q9NXE4

Details

Context
Golgi membraneGO:0000139 plasma membraneGO:0005886 endoplasmic reticulum membraneGO:0005789 lysosomeGO:0005764
Sphingomyelin cycle (ceramide <-> sphingomyelin)Metabolic Pathwaysphingomyelin_cycle
sphingomyelin biosynthetic processGO:0006686 sphingomyelin catabolic processGO:0006685
Context
Golgi membraneGO:0000139 plasma membraneGO:0005886 endoplasmic reticulum membraneGO:0005789 lysosomeGO:0005764

Sphingomyelin cycle (GO:0006686 biosynthesis + GO:0006685 catabolism), grounded to seven completed human gene reviews (SMPD1 reviewed/merged earlier, cited). SYNTHESIS: SGMS1 (Q86VZ5, Golgi) + SGMS2 (Q8NHU3, PM) share PTHR21290, GO:0033188 — they use PHOSPHATIDYLCHOLINE (not CDP-choline; the GO:0047493 CDP-choline term was a recurrent mis-map corrected in both reviews), producing SM + DAG. HYDROLYSIS (SM -> ceramide + phosphocholine, GO:0004767): acid SMPD1 (P17405 PTHR10340, lysosomal, Zn2+; Niemann-Pick A/B); Mg2+ neutral SMPD3/nSMase2 (Q9NY59) + SMPD2/nSMase1 (O60906) sharing PTHR16320 (SMPD3 is the major cellular nSMase; SMPD2's preferred substrate is lyso-PAF, so its SMase role is limited — its second MF GO:0004629 C-type glycerophospholipase is in the SMPD2 review); and nSMase3 SMPD4 (Q9NXE4 PTHR12988, ER/Golgi/nuclear envelope; several GOA entries were mis-mapped to sphingomyelin phosphodiesterase-D GO:0050290 and corrected to the type-C GO:0004767). The ceramide produced feeds the ceramidase/sphingosine-1-phosphate rheostat and de-novo ceramide modules; SGMS also links to glycerolipid signalling via DAG. GO term ids/labels verified against the local go.db. Disorders: SMPD1 Niemann-Pick A/B; SGMS2 and SMPD3 skeletal dysplasias; SMPD4 neurodevelopmental disorder with microcephaly.

Connections

The sphingomyelin made by SGMS1/2 is a substrate for the neutral sphingomyelinases.
Sphingomyelin is also hydrolysed by nSMase3 (SMPD4).
Sphingomyelin delivered to lysosomes is hydrolysed by acid sphingomyelinase SMPD1.
The ceramide released by the sphingomyelinases can be re-used by the synthases, closing the SM<-> ceramide cycle (ceramide also feeds the ceramidase/S1P rheostat and re-acylation pathways).
Part 1: sphingomyelin synthesis (ceramide + PC -> SM + DAG)
Sphingomyelin synthases (SGMS1/SGMS2)Reactionsphingomyelin_synthesis

Annotons

SGMS1/SGMS2: sphingomyelin synthase
sgms_activity
Participant: Family: SGMS / sphingomyelin synthase family
Family:
SGMS / sphingomyelin synthase familyPANTHER:PTHR21290
Representative Members: SGMS1 (human)UniProtKB:Q86VZ5 SGMS2 (human)UniProtKB:Q8NHU3

Function

sphingomyelin synthase activityGO:0033188
Substrates: ceramide phosphatidylcholine (PC)
Products: sphingomyelin (SM) diacylglycerol (DAG)

Locations

Golgi membraneGO:0000139

Transfer phosphocholine from PC to ceramide (SM + DAG).

Part 2: neutral sphingomyelin hydrolysis (nSMase1/2)
Neutral sphingomyelinases 1/2 (SMPD2/SMPD3)Reactionneutral_sm_hydrolysis

Annotons

SMPD2/SMPD3: Mg2+-dependent neutral sphingomyelinase
smpd23_activity
Participant: Family: SMPD2/SMPD3 neutral sphingomyelinase family
Family:
SMPD2/SMPD3 neutral sphingomyelinase familyPANTHER:PTHR16320
Representative Members: SMPD3 / nSMase2 (human)UniProtKB:Q9NY59 SMPD2 / nSMase1 (human)UniProtKB:O60906

Function

sphingomyelin phosphodiesterase activityGO:0004767
Substrates: sphingomyelin (Mg2+)
Products: ceramide phosphocholine

Locations

plasma membraneGO:0005886

Hydrolyse SM to ceramide + phosphocholine (neutral pH, Mg2+).

Part 3: neutral sphingomyelin hydrolysis (nSMase3)
Neutral sphingomyelinase 3 (SMPD4)Reactionnsmase3_hydrolysis

Annotons

SMPD4: neutral sphingomyelinase 3 (nSMase3)
smpd4_activity
Participant: Family: SMPD4 / neutral sphingomyelinase 3 family
Family:
SMPD4 / neutral sphingomyelinase 3 familyPANTHER:PTHR12988
Representative Members: SMPD4 (human)UniProtKB:Q9NXE4

Function

sphingomyelin phosphodiesterase activityGO:0004767
Substrates: sphingomyelin (Mg2+)
Products: ceramide phosphocholine

Locations

endoplasmic reticulum membraneGO:0005789

Hydrolyse SM to ceramide + phosphocholine (ER/Golgi/nuclear envelope).

Part 4: acid sphingomyelin hydrolysis (lysosomal)
Acid sphingomyelinase (SMPD1)Reactionacid_sm_hydrolysis

Annotons

SMPD1: lysosomal acid sphingomyelinase
smpd1_activity
Participant: Family: SMPD1 / acid sphingomyelinase family
Family:
SMPD1 / acid sphingomyelinase familyPANTHER:PTHR10340
Representative Members: SMPD1 (human)UniProtKB:P17405

Function

sphingomyelin phosphodiesterase activityGO:0004767
Substrates: sphingomyelin (acidic pH, Zn2+)
Products: ceramide phosphocholine

Locations

lysosomeGO:0005764

Hydrolyse SM to ceramide + phosphocholine (acid pH, lysosome).