Sphingosine-1-phosphate rheostat (ceramide -> sphingosine -> S1P -> exit)

The "sphingolipid rheostat" is the interconversion of the bioactive sphingolipids ceramide, sphingosine and sphingosine-1-phosphate (S1P), whose relative levels set the balance between cell death/growth arrest (ceramide, sphingosine) and survival/proliferation/migration (S1P). Ceramide is hydrolysed to sphingosine plus a free fatty acid by ceramidases: the alkaline ceramidases ACER1 (ER, skin), ACER2 (Golgi) and ACER3 (ER/Golgi, broadly expressed) act here, complementing the acid (ASAH1, lysosomal) and neutral (ASAH2) ceramidases curated elsewhere. Sphingosine is then phosphorylated with ATP to S1P by the sphingosine kinases SPHK1 (cytosolic, translocating to the plasma membrane; pro-survival/pro-inflammatory) and SPHK2 (nuclear/ER/mitochondrial; its nuclear S1P inhibits HDAC1/2). S1P has two fates. It is reversibly dephosphorylated back to sphingosine by the ER S1P phosphatases SGPP1 and SGPP2 (recycling sphingosine for re-acylation to ceramide and damping S1P signalling), or it is IRREVERSIBLY cleaved by the PLP-dependent ER lyase SGPL1 to (2E)-hexadecenal + phosphoethanolamine — the sole exit from sphingolipid metabolism, which also builds the tissue-to-blood S1P gradient that governs lymphocyte egress. Inherited defects illustrate the pathway's importance: ACER3 childhood leukodystrophy and SGPL1 sphingosine-phosphate-lyase insufficiency syndrome (steroid-resistant nephrotic syndrome with adrenal insufficiency); the S1P axis is also the target of the immunomodulator fingolimod (FTY720, an SPHK2 substrate).

MODULE:sphingosine_1_phosphate_rheostatDRAFTMetabolic Pathwaymodules/sphingosine_1_phosphate_rheostat.yaml
sphingosine metabolic processGO:0006670 sphingolipid catabolic processGO:0030149
GO:0006670
sphingosine metabolic process
The ceramidases, kinases and phosphatases interconvert ceramide, sphingosine and S1P (GO:0006670).
GO:0030149
sphingolipid catabolic process
SGPL1 provides the irreversible catabolic exit of sphingolipid metabolism (GO:0030149).
file:human/ACER1/ACER1-ai-review.yaml
ACER1 gene review (human)
The ER ceramide->sphingosine step (UniProtKB:Q8TDN7, GO:0017040) matches the completed human ACER1 review.
file:human/ACER2/ACER2-ai-review.yaml
ACER2 gene review (human)
The Golgi ceramide->sphingosine step (UniProtKB:Q5QJU3, GO:0017040) matches the completed human ACER2 review.
file:human/ACER3/ACER3-ai-review.yaml
ACER3 gene review (human)
The ER/Golgi ceramide->sphingosine step (UniProtKB:Q9NUN7, GO:0017040) matches the completed human ACER3 review.
file:human/SPHK1/SPHK1-ai-review.yaml
SPHK1 gene review (human)
The cytosolic sphingosine->S1P step (UniProtKB:Q9NYA1, GO:0008481) matches the completed human SPHK1 review.
file:human/SPHK2/SPHK2-ai-review.yaml
SPHK2 gene review (human)
The nuclear/ER sphingosine->S1P step (UniProtKB:Q9NRA0, GO:0008481) matches the completed human SPHK2 review.
file:human/SGPP1/SGPP1-ai-review.yaml
SGPP1 gene review (human)
The S1P->sphingosine dephosphorylation step (UniProtKB:Q9BX95, GO:0042392) matches the completed human SGPP1 review.
file:human/SGPP2/SGPP2-ai-review.yaml
SGPP2 gene review (human)
The S1P->sphingosine dephosphorylation step (UniProtKB:Q8IWX5, GO:0042392) matches the completed human SGPP2 review.
file:human/SGPL1/SGPL1-ai-review.yaml
SGPL1 gene review (human)
The irreversible S1P cleavage (exit) step (UniProtKB:O95470, GO:0008117 + PLP) matches the completed human SGPL1 review.
5Nodes
4Parts
0Variant Sets
0Variants
5Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:sphingosine_1_phosphate_rheostat deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (8/8 grounded genes reviewed)

7 complete review(s) · 0 with deep research · 0 missing review · 8 reviewed but lacking deep research

Gene Review Complete Deep research
ACER1 Q8TDN7
ACER2 Q5QJU3
ACER3 Q9NUN7
SGPL1 O95470
SGPP1 Q9BX95
SGPP2 Q8IWX5
SPHK1 Q9NYA1 121/122
SPHK2 Q9NRA0

Details

Context
endoplasmic reticulum membraneGO:0005789 Golgi membraneGO:0000139 cytosolGO:0005829 nucleusGO:0005634
Sphingosine-1-phosphate rheostatMetabolic Pathwaysphingosine_1_phosphate_rheostat
sphingosine metabolic processGO:0006670 sphingolipid catabolic processGO:0030149
Context
endoplasmic reticulum membraneGO:0005789 Golgi membraneGO:0000139 cytosolGO:0005829 nucleusGO:0005634

Sphingosine-1-phosphate rheostat (GO:0006670 sphingosine metabolic + GO:0030149 sphingolipid catabolic), grounded to eight completed human gene reviews (acid/neutral ceramidases ASAH1/ASAH2 curated separately). CERAMIDE->SPHINGOSINE: alkaline ceramidases ACER1 (Q8TDN7, ER/skin), ACER2 (Q5QJU3, Golgi, p53-induced) sharing PTHR46139, and ACER3 (Q9NUN7 PTHR46187, ER/Golgi, unsaturated LC-ceramides + Zn2+; leukodystrophy), all GO:0017040 (the single GO ceramidase MF; there is no separate "alkaline ceramidase" term). SPHINGOSINE->S1P: SPHK1 (Q9NYA1, cytosol/PM, pro-survival) + SPHK2 (Q9NRA0, nucleus/ER/mito, nuclear S1P inhibits HDAC1/2 - GO:0046811) sharing PTHR12358, GO:0008481 + ATP (both correctly do NOT carry S1P receptor activity - they make the ligand). S1P->SPHINGOSINE (reverse): SGPP1 (Q9BX95) + SGPP2 (Q8IWX5) sharing PTHR14969, GO:0042392 (+ dihydro-S1P GO:0070780), ER. EXIT: SGPL1 (O95470 PTHR42735, GO:0008117 sphinganine-1-phosphate aldolase = the S1P-lyase MF, PLP-dependent) irreversibly cleaves S1P to hexadecenal + phosphoethanolamine - the only exit, and the source of the tissue<->blood S1P gradient. Sphingosine regenerated by SGPP/ceramidases is re-acylated to ceramide by the CerS enzymes (de-novo ceramide module). GO term ids/labels verified against the local go.db. Disorders: ACER3 leukodystrophy; SGPL1 SPLIS (steroid-resistant nephrotic syndrome + adrenal insufficiency). Fingolimod/FTY720 is an SPHK2 substrate and S1P-receptor modulator.

Connections

The sphingosine released by the ceramidases is the substrate for the sphingosine kinases.
sphingosine_to_s1p -> s1p_lysis Provides Input For
The S1P made by SPHK1/2 is irreversibly degraded by the lyase SGPL1 (pathway exit).
sphingosine_to_s1p -> s1p_to_sphingosine Provides Input For
S1P is also reversibly dephosphorylated back to sphingosine by SGPP1/SGPP2.
s1p_to_sphingosine -> sphingosine_to_s1p Negatively Regulates
The SGPP phosphatases oppose the sphingosine kinases (regenerating sphingosine), forming the sphingosine<->S1P interconversion cycle at the heart of the rheostat.
Part 1: ceramide hydrolysis to sphingosine
Alkaline ceramidases (ACER1/ACER2/ACER3)Reactionceramide_to_sphingosine

Annotons

ACER1/ACER2: alkaline ceramidase
acer12_activity
Participant: Family: ACER1/ACER2 alkaline ceramidase family
Family:
ACER1/ACER2 alkaline ceramidase familyPANTHER:PTHR46139
Representative Members: ACER1 (human)UniProtKB:Q8TDN7 ACER2 (human)UniProtKB:Q5QJU3

Function

ceramidase activityGO:0017040
Substrates: ceramide (very-long/long-chain) H2O
Products: sphingosine free fatty acid

Locations

endoplasmic reticulum membraneGO:0005789

Hydrolyse ceramide to sphingosine (ACER1 ER/skin; ACER2 Golgi).

ACER3: alkaline ceramidase 3
acer3_activity
Participant: Family: ACER3 alkaline ceramidase family
Family:
ACER3 alkaline ceramidase familyPANTHER:PTHR46187
Representative Members: ACER3 (human)UniProtKB:Q9NUN7

Function

ceramidase activityGO:0017040
Substrates: unsaturated long-chain ceramide (Zn2+) H2O
Products: sphingosine free fatty acid

Locations

Golgi membraneGO:0000139

Hydrolyses unsaturated long-chain ceramide to sphingosine.

Part 2: sphingosine phosphorylation to S1P
Sphingosine kinases (SPHK1/SPHK2)Reactionsphingosine_to_s1p

Annotons

SPHK1/SPHK2: sphingosine kinase
sphk_activity
Participant: Family: SPHK / sphingosine (DAG-kinase-like) kinase family
Family:
SPHK / sphingosine (DAG-kinase-like) kinase familyPANTHER:PTHR12358
Representative Members: SPHK1 (human)UniProtKB:Q9NYA1 SPHK2 (human)UniProtKB:Q9NRA0

Function

sphingosine kinase activityGO:0008481
Substrates: sphingosine (and dihydrosphingosine) ATP
Products: sphingosine 1-phosphate (S1P) ADP

Locations

cytosolGO:0005829

Phosphorylate sphingosine to the signalling lipid S1P.

Part 3: S1P dephosphorylation (reverse arm)
S1P phosphatases (SGPP1/SGPP2)Reactions1p_to_sphingosine

Annotons

SGPP1/SGPP2: sphingosine-1-phosphate phosphatase
sgpp_activity
Participant: Family: SGPP / S1P phosphatase (lipid phosphate phosphatase) family
Family:
SGPP / S1P phosphatase (lipid phosphate phosphatase) familyPANTHER:PTHR14969
Representative Members: SGPP1 (human)UniProtKB:Q9BX95 SGPP2 (human)UniProtKB:Q8IWX5

Function

sphingosine-1-phosphate phosphatase activityGO:0042392
Substrates: sphingosine 1-phosphate (and dihydro-S1P)
Products: sphingosine phosphate

Locations

endoplasmic reticulum membraneGO:0005789

Dephosphorylate S1P back to sphingosine (recycling / signal damping).

Part 4: irreversible S1P cleavage (pathway exit)
Sphingosine-1-phosphate lyase (SGPL1)Reactions1p_lysis

Annotons

SGPL1: S1P lyase (PLP)
sgpl1_activity
Participant: Family: SGPL1 / sphingosine-1-phosphate lyase family
Family:
SGPL1 / sphingosine-1-phosphate lyase familyPANTHER:PTHR42735
Representative Members: SGPL1 (human)UniProtKB:O95470

Function

sphinganine-1-phosphate aldolase activityGO:0008117
Substrates: sphingosine 1-phosphate (PLP cofactor)
Products: (2E)-hexadecenal phosphoethanolamine

Locations

endoplasmic reticulum membraneGO:0005789

Irreversibly cleaves S1P to hexadecenal + phosphoethanolamine (pathway exit).