Cholesterol biosynthesis I — sterol commitment (squalene -> lanosterol); FDFT1/SQLE/LSS

The sterol-commitment segment of cholesterol biosynthesis converts the isoprenoid intermediate farnesyl diphosphate into the first cyclic sterol, lanosterol, committing carbon away from the branched isoprenoid pool (dolichol, ubiquinone, prenylation) and irreversibly toward sterols. Squalene synthase (FDFT1) performs the first committed step: a reductive head-to-head condensation of two farnesyl-diphosphate molecules (via presqualene diphosphate) to the C30 hydrocarbon squalene. Squalene monooxygenase / epoxidase (SQLE), an FAD flavoprotein and the second rate-limiting, cholesterol-feedback- regulated enzyme of the pathway, oxidises squalene to (S)-2,3-epoxysqualene using O2 and NADPH. Lanosterol synthase (LSS, oxidosqualene cyclase) then carries out the remarkable polycyclization of 2,3-epoxysqualene to lanosterol, the tetracyclic sterol scaffold from which cholesterol (and, in other tissues, downstream sterols) is made by the post-lanosterol demethylation/reduction steps. All three enzymes are endoplasmic-reticulum-membrane proteins. Inherited defects: FDFT1 deficiency (squalene synthase deficiency, a congenital cholesterol-biosynthesis disorder with dysmorphism/developmental delay) and LSS mutations (hypotrichosis with juvenile cataract / congenital cataract, and a palmoplantar keratoderma); SQLE is a validated antifungal/anticancer drug target rather than a Mendelian-disease gene.

MODULE:sterol_commitment_squalene_to_lanosterolDRAFTMetabolic Pathwaymodules/sterol_commitment_squalene_to_lanosterol.yaml
cholesterol biosynthetic processGO:0006695
GO:0006695
cholesterol biosynthetic process
The module is grounded in cholesterol biosynthetic process (GO:0006695); it covers the committed squalene -> lanosterol segment.
Reactome:R-HSA-9969896
Lanosterol biosynthesis
Step order and reaction stoichiometries follow the human Reactome "Lanosterol biosynthesis" reactions R-HSA-191402 (FDFT1), R-HSA-191299 (SQLE) and R-HSA-191366 (LSS).
file:human/FDFT1/FDFT1-ai-review.yaml
FDFT1 gene review (human)
The squalene-synthase step (UniProtKB:P37268, GO:0051996) matches the completed human FDFT1 review.
file:human/SQLE/SQLE-ai-review.yaml
SQLE gene review (human)
The squalene-epoxidase step (UniProtKB:Q14534, GO:0004506) matches the completed human SQLE review.
file:human/LSS/LSS-ai-review.yaml
LSS gene review (human)
The lanosterol-synthase step (UniProtKB:P48449, GO:0000250) matches the completed human LSS review.
4Nodes
3Parts
0Variant Sets
0Variants
3Annotons
2Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:sterol_commitment_squalene_to_lanosterol deep-research report alongside the module YAML.

Leaf nodes lacking representative members

every leaf node grounds to a representative protein.

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (3/3 grounded genes reviewed)

3 complete review(s) · 0 with deep research · 0 missing review · 3 reviewed but lacking deep research

Gene Review Complete Deep research
FDFT1 P37268
LSS P48449
SQLE Q14534

Details

Context
endoplasmic reticulum membraneGO:0005789
Sterol commitment (squalene -> lanosterol)Metabolic Pathwaysterol_commitment_squalene_to_lanosterol
cholesterol biosynthetic processGO:0006695
Context
endoplasmic reticulum membraneGO:0005789

The sterol-commitment (squalene -> lanosterol) segment of cholesterol biosynthesis grounded to the human enzymes FDFT1 (UniProtKB:P37268, GO:0051996, EC 2.5.1.21), SQLE (Q14534, GO:0004506, EC 1.14.14.17) and LSS (P48449, GO:0000250, EC 5.4.99.7). GO molecular-function terms were taken from the human GOA records; Reactome reaction ids and titles were verified against the local reactome cache. Each step uses a PANTHER family selector with the human enzyme as representative; all three enzymes reside in the ER membrane. Upstream, farnesyl diphosphate comes from the mevalonate pathway (HMGCS1/HMGCR/ MVK/PMVK/MVD -> IPP -> FDPS); downstream, lanosterol is converted to cholesterol by the post-lanosterol demethylation/reduction enzymes (CYP51A1, TM7SF2/LBR, MSMO1, NSDHL, HSD17B7, EBP, SC5D, DHCR7/DHCR24) via the Bloch and Kandutsch-Russell arms (a separate module, to follow). FDFT1 is the committed branch point diverting the shared isoprenoid pool to sterols; SQLE is the second cholesterol-feedback-regulated rate-limiting control point. Disorders: FDFT1 -> squalene synthase deficiency; LSS -> hypotrichosis with juvenile cataract / congenital cataract (and a palmoplantar keratoderma); SQLE is a drug target (terbinafine-class antifungals; anticancer) rather than a classic disease gene.

Connections

fdft1_step -> sqle_step Provides Input For
Squalene from FDFT1 is epoxidised by SQLE.
sqle_step -> lss_step Provides Input For
2,3-epoxysqualene from SQLE is cyclised by LSS to lanosterol.
Part 1: squalene synthesis (committed step)
2 farnesyl diphosphate + NADPH to squaleneReactionfdft1_step

Annotons

FDFT1: squalene synthase
fdft1_activity
Participant: Family: Squalene/phytoene synthase family (FDFT1)
Family:
Squalene/phytoene synthase family (FDFT1)PANTHER:PTHR11626
Representative Members: FDFT1 (human)UniProtKB:P37268

Function

squalene synthase [NAD(P)H] activityGO:0051996
Substrates: farnesyl diphosphate (x2) NADPH
Products: squalene diphosphate

Locations

endoplasmic reticulum membraneGO:0005789

First committed step of sterol biosynthesis; diverts the isoprenoid pool specifically to sterols. Deficiency = squalene synthase deficiency.

Part 2: epoxidation (second rate-limiting, sterol-regulated)
squalene + O2 + NADPH to (S)-2,3-epoxysqualeneReactionsqle_step

Annotons

SQLE: squalene monooxygenase (epoxidase)
sqle_activity
Participant: Family: Squalene monooxygenase family (SQLE)
Family:
Squalene monooxygenase family (SQLE)PANTHER:PTHR10835
Representative Members: SQLE (human)UniProtKB:Q14534

Function

squalene monooxygenase activityGO:0004506
Substrates: squalene O2 NADPH (via P450 reductase)
Products: (S)-2,3-epoxysqualene (2,3-oxidosqualene)

Locations

endoplasmic reticulum membraneGO:0005789

FAD-dependent epoxidation of squalene; second rate-limiting step, subject to cholesterol-accelerated degradation. Antifungal/anticancer drug target.

Part 3: cyclization to the first cyclic sterol
(S)-2,3-epoxysqualene to lanosterolReactionlss_step

Annotons

LSS: lanosterol synthase (oxidosqualene cyclase)
lss_activity
Participant: Family: Oxidosqualene cyclase family (LSS)
Family:
Oxidosqualene cyclase family (LSS)PANTHER:PTHR11764
Representative Members: LSS (human)UniProtKB:P48449

Function

lanosterol synthase activityGO:0000250
Substrates: (S)-2,3-epoxysqualene
Products: lanosterol

Locations

endoplasmic reticulum membraneGO:0005789

Cyclises 2,3-epoxysqualene to lanosterol, the tetracyclic sterol scaffold and committed precursor of cholesterol. Mutations -> congenital cataract / hypotrichosis.