Function
Processes
Locations
Produced by meristemoid mother cells and early lineage cells; inhibits neighbouring protodermal cells from adopting MMC fate.
In the Arabidopsis leaf epidermis, stomata are produced by a dedicated cell lineage whose successive transitions are driven by three closely related group Ia bHLH transcription factors, each acting as a heterodimer with the broadly expressed group IIIb bHLHs SCREAM/ICE1 (SCRM) and SCRM2. SPEECHLESS (SPCH) initiates the lineage by driving the asymmetric entry division of a meristemoid mother cell, MUTE terminates the self-renewing asymmetric divisions of the meristemoid and converts it into a guard mother cell (GMC), and FAMA drives the single symmetric GMC division and guard cell differentiation, then locks in guard cell fate with RETINOBLASTOMA-RELATED. Lineage entry and spacing are restrained by cell-cell signalling: the secreted cysteine-rich peptide EPF2, produced by early lineage cells, binds the leucine-rich-repeat receptor kinase ERECTA in a complex with the non-catalytic co-receptor TOO MANY MOUTHS (TMM); ligand binding recruits SERK co-receptor kinases and activates the MAPKKK YODA, which phosphorylates MKK4/MKK5, which in turn activate MPK3/MPK6. MPK3/MPK6, docked onto SCRM through its KiDoK motif and recruited with YODA to the cortex by the polarity scaffold BASL, phosphorylate SPCH and SCRM and promote their degradation, limiting lineage entry. Because SPCH-SCRM directly activates EPF2 and TMM, the circuit forms a negative feedback loop that self-organizes stomatal density and the one-cell spacing rule. The related peptide EPF1, perceived mainly by ERL1, acts later on spacing divisions, and the positive peptide stomagen (EPFL9) competes with EPF2 for ERECTA-TMM. Brassinosteroid (via BIN2 inhibition of YODA), CO2 (via CRSP cleavage of EPF2) and other environmental inputs converge on this module.
Boundary: the module covers the core EPF2-ERECTA/TMM-YODA-MKK4/5-MPK3/6 inhibitory relay and the SPCH-MUTE-FAMA/SCRM transcriptional switch of the Arabidopsis stomatal lineage. Parallel or modulatory components are described in prose but not modelled as annotons because they lack gene reviews in this repository: EPF1 and ERL1/ERL2 (spacing divisions), stomagen/EPFL9 (antagonist ligand), SERK co-receptors, BASL/POLAR polarity scaffolds, BIN2, CRSP, SCRM2 and MPK3 (MPK3 is named in prose as MPK6's redundant partner). MKK4 and MKK5 are grounded as representative members of the redundant MAPKK step and both have complete gene reviews. Annoton molecular functions follow the gene reviews' core_functions (EPF2, TMM, ERECTA, YDA, MKK4, MKK5, MPK6, SPCH, MUTE, FAMA, ICE1). No production GO-CAM in gocams/index.tsv contains any member, so no gocam_associations are given. No PANTHER family ids are asserted (families are described by preferred_term and representative members only). Deep research by the Falcon provider was unavailable (HTTP 402) during this session.
All recommended fields populated.
✗ none found
No MODULE:stomatal_lineage_development deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
11 gene-function check(s) reflected in core functions · 0 conflict(s) · 1 evidence or coverage gap(s) (12 comparison(s))
Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.
| Annoton | Participant | Function | Assessment |
|---|---|---|---|
| epf2_ligand | EPF2 UniProtKB:Q8LC53 Gene |
receptor ligand activity GO:0048018 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| erecta_receptor | ERECTA UniProtKB:Q42371 Gene |
transmembrane receptor protein serine/threonine kinase activity GO:0004675 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| tmm_coreceptor | TMM UniProtKB:Q9SSD1 Gene |
coreceptor activity GO:0015026 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| yda_mapkkk | YDA (YODA) UniProtKB:Q9CAD5 Gene |
MAP kinase kinase kinase activity GO:0004709 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| mkk4_mkk5_activity | MKK4 UniProtKB:O80397 Family Representative |
MAP kinase kinase activity GO:0004708 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| mkk4_mkk5_activity | MKK5 UniProtKB:Q8RXG3 Family Representative |
MAP kinase kinase activity GO:0004708 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| mpk6_mapk | MPK6 UniProtKB:Q39026 Gene |
MAP kinase activity GO:0004707 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| ice1_partner | ICE1 (SCRM) UniProtKB:Q9LSE2 Gene |
protein heterodimerization activity GO:0046982 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| spch_tf | SPCH UniProtKB:Q700C7 Gene |
DNA-binding transcription activator activity GO:0001216 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| mute_tf | MUTE UniProtKB:Q9M8K6 Gene |
DNA-binding transcription factor activity GO:0003700 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| fama_tf | FAMA UniProtKB:Q56YJ8 Gene |
DNA-binding transcription factor activity GO:0003700 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| mkk4_mkk5_activity | MKK4/MKK5 group C MAP kinase kinases Family |
MAP kinase kinase activity GO:0004708 |
Family Id Missing
The family has no identifier linking it to a curated family review. |
✓ every negative regulator described as feedback has an upstream edge closing the loop.
10 complete review(s) · 5 with deep research · 0 missing review · 6 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| EPF2 Q8LC53 | ✓ | ✓ | ✗ |
| ERECTA Q42371 | ✓ | ✓ | ✗ |
| FAMA Q56YJ8 | ✓ | ✓ | ✗ |
| ICE1 Q9LSE2 | ✓ | ✓ | ✗ |
| MKK4 O80397 | ✓ | 40/41 | ✓ |
| MKK5 Q8RXG3 | ✓ | ✓ | ✓ |
| MPK6 Q39026 | ✓ | ✓ | ✓ |
| MUTE Q9M8K6 | ✓ | ✓ | ✓ |
| SPCH Q700C7 | ✓ | ✓ | ✓ |
| TMM Q9SSD1 | ✓ | ✓ | ✗ |
| YDA Q9CAD5 | ✓ | ✓ | ✗ |
EPF2 peptide signalling through ERECTA/TMM and the YODA-MKK4/5-MPK3/6 cascade restrains the SPCH-SCRM lineage-entry factor, while SPCH, MUTE and FAMA (each heterodimerized with SCRM) drive the successive stomatal lineage transitions.
Secreted EPF2 binds the ERECTA ectodomain in a constitutive complex with the co-receptor TMM, activating ERECTA kinase signalling.
Produced by meristemoid mother cells and early lineage cells; inhibits neighbouring protodermal cells from adopting MMC fate.
Principal EPF2 receptor; recruits SERK co-receptor kinases and relays the signal to YODA. Paralogs ERL1/ERL2 perceive EPF1 at later spacing divisions.
Forms constitutive complexes with ERECTA/ERL1 that create the EPF1/EPF2 binding pocket and exclude EPFL4/6, acting as a ligand-specificity switch.
The MAPKKK YODA activates the redundant MAPKKs MKK4/MKK5, which activate the redundant MAPKs MPK3/MPK6; BASL concentrates YODA and MPK3/6 at the cortex of asymmetrically dividing cells.
Phosphorylated by YODA; activate MPK3/MPK6. Loss of MKK4/MKK5 causes stomatal clustering.
Acts redundantly with MPK3 (UniProtKB:Q39023); phosphorylates SPCH and SCRM in the nucleus (docked on SCRM's KiDoK motif) and BASL at the cortex.
Stage-specific group Ia bHLHs heterodimerize with SCRM/ICE1 (or SCRM2) to drive lineage entry (SPCH), meristemoid-to-GMC transition (MUTE) and guard cell differentiation (FAMA).
Redundant with SCRM2; also scaffolds MPK3/MPK6 to SPCH through its KiDoK motif (protein-macromolecule adaptor activity), coupling the MAPK cascade to lineage-entry control.
Initiates the stomatal lineage by directing the asymmetric entry division; directly activates EPF2, TMM and SCRM (feedback); phosphorylated and destabilized by MPK3/MPK6.
Drives guard cell differentiation and halts GMC divisions; recruits RBR via an LxCxE motif to make guard cell fate irreversible.