Neurotransmitter loading into synaptic vesicles

The vesicle-filling stage of the synaptic vesicle cycle. The vacuolar-type H+-ATPase on the synaptic vesicle membrane hydrolyses ATP to pump protons into the lumen, generating a proton electrochemical gradient (a pH gradient plus a lumen-positive membrane potential). A vesicular neurotransmitter transporter then uses that gradient to concentrate transmitter into the vesicle against a steep concentration gradient. The transporter identity sets the transmitter phenotype of the terminal: VGLUT1/2/3 (SLC17A6/7/8) for glutamate, VGAT (SLC32A1) for GABA and glycine, VMAT2 (SLC18A2) for monoamines, and VAChT (SLC18A3) for acetylcholine. The module is modeled with human exemplars but the acidify -> load topology is conserved across metazoan chemical synapses. Grounded in GO:0098700 (neurotransmitter loading into synaptic vesicle) and GO:0097401 (synaptic vesicle lumen acidification).

MODULE:synaptic_vesicle_neurotransmitter_loadingDRAFTCONCRETEBiological Processmodules/synaptic_vesicle_neurotransmitter_loading.yaml
neurotransmitter loading into synaptic vesicleGO:0098700
GO:0098700
neurotransmitter loading into synaptic vesicle
The module is grounded in the GO process for transmitter uptake into synaptic vesicles.
GO:0097401
synaptic vesicle lumen acidification
V-ATPase proton pumping supplies the driving force for vesicular transporters.
PMID:17880890
The neurotransmitter cycle and quantal size.
Review of how the vesicular H+-ATPase gradient (delta-pH and delta-psi) is used differently by the vesicular transporter families and how transporter expression sets quantal size.
PMID:17110340
Molecular anatomy of a trafficking organelle.
Quantitative proteomics of purified synaptic vesicles establishes the V-ATPase and the vesicular transporters as stoichiometric resident components of the organelle.
PMID:24183019
Neurotransmitter release: the last millisecond in the life of a synaptic vesicle.
Places transmitter loading as the first stage of the synaptic vesicle cycle.

Human-centric exemplars; family-level descriptors are used so the module remains reusable. The V-ATPase step is a reference to MODULE:vacuolar_atpase_acidification, which holds the full subunit set once; earlier versions listed three role-bearing subunits (catalytic A, c ring, a1) here. The transporter variant set is ONE_OR_MORE because some terminals co-release two transmitters. Detailed exocytosis and endocytosis stages are in MODULE:synaptic_vesicle_exocytosis and MODULE:synaptic_vesicle_endocytosis; the umbrella cycle is MODULE:synaptic_vesicle_cycle. Caenorhabditis elegans orthologs are listed as second representative members (eat-4, unc-47, cat-1, unc-17); the worm has one gene per transporter role, so the neurotransmitter variant set maps one-to-one.

7Nodes
2Parts
1Variant Sets
4Variants
4Annotons
1Connections

Derived QC

Recommended-field compliance

76.9% recommended fields populated
  • knowledge_gaps[0] · provenance (0/1)
  • knowledge_gaps[1] · provenance (0/1)
  • knowledge_gaps[2] · provenance (0/1)

Module deep research

✗ none found

No MODULE:synaptic_vesicle_neurotransmitter_loading deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

5 gene-function check(s) reflected in core functions · 0 conflict(s) · 8 evidence or coverage gap(s) (13 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
vglut_transporter SLC17A7 (Homo sapiens)
UniProtKB:Q9P2U7
Family Representative
L-glutamate transmembrane transporter activity
GO:0005313
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
vglut_transporter eat-4 (Caenorhabditis elegans)
UniProtKB:P34644
Family Representative
L-glutamate transmembrane transporter activity
GO:0005313
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
vglut_transporter SLC17A6 (Homo sapiens)
UniProtKB:Q9P2U8
Family Representative
L-glutamate transmembrane transporter activity
GO:0005313
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
vgat_transporter SLC32A1 (Homo sapiens)
UniProtKB:Q9H598
Family Representative
gamma-aminobutyric acid transmembrane transporter activity
GO:0015185
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
vgat_transporter unc-47 (Caenorhabditis elegans)
UniProtKB:P34579
Family Representative
gamma-aminobutyric acid transmembrane transporter activity
GO:0015185
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
vmat2_transporter SLC18A2 (Homo sapiens)
UniProtKB:Q05940
Family Representative
monoamine transmembrane transporter activity
GO:0008504
Review Missing
No ai-review exists for this protein; its function and core-function coverage cannot yet be checked.
vmat2_transporter cat-1 (Caenorhabditis elegans)
UniProtKB:Q9GNP0
Family Representative
monoamine transmembrane transporter activity
GO:0008504
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
vacht_transporter SLC18A3 (Homo sapiens)
UniProtKB:Q16572
Family Representative
acetylcholine transmembrane transporter activity
GO:0005277
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
vacht_transporter unc-17 (Caenorhabditis elegans)
UniProtKB:P34711
Family Representative
acetylcholine transmembrane transporter activity
GO:0005277
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
vglut_transporter VGLUT (SLC17A6/7/8) vesicular glutamate transporter family
PANTHER:PTHR11662
Family
L-glutamate transmembrane transporter activity
GO:0005313
Family Review Missing
No supported structured family review is available for PANTHER:PTHR11662.
vgat_transporter VGAT (SLC32A1) vesicular inhibitory amino acid transporter
PANTHER:PTHR48017:SF206
Family
gamma-aminobutyric acid transmembrane transporter activity
GO:0015185
Family Review Missing
No supported structured family review is available for PANTHER:PTHR48017:SF206.
vmat2_transporter VMAT/VAChT (SLC18) vesicular amine transporter family
PANTHER:PTHR23506
Family
monoamine transmembrane transporter activity
GO:0008504
Family Review Missing
No supported structured family review is available for PANTHER:PTHR23506.
vacht_transporter VMAT/VAChT (SLC18) vesicular amine transporter family
PANTHER:PTHR23506
Family
acetylcholine transmembrane transporter activity
GO:0005277
Family Review Missing
No supported structured family review is available for PANTHER:PTHR23506.

Gene-review completeness (5/9 grounded genes reviewed)

5 complete review(s) · 4 with deep research · 4 missing review · 1 reviewed but lacking deep research

Gene Review Complete Deep research
cat-1 Q9GNP0 ✓ ✓ ✓
eat-4 P34644 ✓ ✓ ✓
SLC18A2 (Homo sapiens) Q05940 ✗ — —
SLC32A1 (Homo sapiens) Q9H598 ✗ — —
SLC17A7 (Homo sapiens) Q9P2U7 ✗ — —
SLC17A6 (Homo sapiens) Q9P2U8 ✗ — —
SLC18A3 Q16572 ✓ ✓ ✗
unc-17 P34711 ✓ ✓ ✓
unc-47 P34579 ✓ ✓ ✓

Details

Context
synaptic vesicle membraneGO:0030672 presynapseGO:0098793
V-ATPase acidification -> vesicular transporter uptakeBiological Processsynaptic_vesicle_neurotransmitter_loading
neurotransmitter loading into synaptic vesicleGO:0098700
Context
synaptic vesicle membraneGO:0030672 presynapseGO:0098793

Connections

The proton electrochemical gradient built by the V-ATPase powers transporter-mediated uptake.
Part 1: proton gradient generation
V-ATPase acidification of the vesicle lumen (see MODULE:vacuolar_atpase_acidification)sv_lumen_acidification

The V1 sector hydrolyses ATP and the V0 sector translocates protons into the vesicle lumen, generating the pH gradient and lumen-positive membrane potential that drive transmitter uptake. The pump and its subunits are modelled once, in MODULE:vacuolar_atpase_acidification; on synaptic vesicles the V0 a subunit is the a1 isoform (ATP6V0A1; unc-32 in C. elegans).

Realized by module vacuolar_atpase_acidification

synaptic vesicle lumen acidificationGO:0097401
Context
synaptic vesicle membraneGO:0030672
PMID:17880890
The neurotransmitter cycle and quantal size.
The vesicular H+-ATPase produces the delta-pH and delta-psi that drive vesicular transport.
Part 2: transmitter uptake
Vesicular transporter uptake of neurotransmitterTransport Steptransmitter_uptake

A vesicular transporter couples transmitter import to the proton gradient (H+ antiport for VMAT/VAChT/VGAT; predominantly delta-psi driven for VGLUTs). The transporter family determines the transmitter phenotype of the terminal.

Variant set: Vesicular transporter by neurotransmitter by neurotransmitter (One Or More)

Selection is ONE_OR_MORE because some terminals co-release two transmitters (e.g. glutamate with GABA, dopamine or acetylcholine) from the same or neighbouring vesicle pools.

Glutamate loading (VGLUT)Transport Stepglutamate_loading

VGLUT1/2/3 accumulate L-glutamate driven mainly by the membrane potential component of the H+ gradient; they are the defining marker of glutamatergic terminals.

Annotons

Vesicular glutamate transporter
vglut_transporter
Participant: Family: VGLUT (SLC17A6/7/8) vesicular glutamate transporter family
Family:
VGLUT (SLC17A6/7/8) vesicular glutamate transporter familyPANTHER:PTHR11662
Representative Members: SLC17A7 (Homo sapiens)UniProtKB:Q9P2U7 eat-4 (Caenorhabditis elegans)UniProtKB:P34644 SLC17A6 (Homo sapiens)UniProtKB:Q9P2U8

Function

L-glutamate transmembrane transporter activityGO:0005313
Substrates: cytosolic L-glutamate
Products: luminal L-glutamate

Processes

neurotransmitter loading into synaptic vesicleGO:0098700

Locations

synaptic vesicle membraneGO:0030672

Fills vesicles with glutamate at excitatory terminals.

GABA / glycine loading (VGAT)Transport Stepgaba_glycine_loading

The vesicular inhibitory amino acid transporter loads GABA and glycine, using both delta-pH and delta-psi; it defines inhibitory GABAergic and glycinergic terminals.

Annotons

Vesicular GABA/glycine transporter
vgat_transporter
Participant: Family: VGAT (SLC32A1) vesicular inhibitory amino acid transporter
Family:
VGAT (SLC32A1) vesicular inhibitory amino acid transporterPANTHER:PTHR48017:SF206
Representative Members: SLC32A1 (Homo sapiens)UniProtKB:Q9H598 unc-47 (Caenorhabditis elegans)UniProtKB:P34579

Function

gamma-aminobutyric acid transmembrane transporter activityGO:0015185
Substrates: cytosolic GABA (or glycine)
Products: luminal GABA (or glycine)

Processes

neurotransmitter loading into synaptic vesicleGO:0098700

Locations

synaptic vesicle membraneGO:0030672

Fills vesicles with GABA or glycine at inhibitory terminals.

Monoamine loading (VMAT2)Transport Stepmonoamine_loading

VMAT2 exchanges two luminal protons for one cytosolic monoamine (dopamine, noradrenaline, serotonin, histamine).

Annotons

Vesicular monoamine transporter 2
vmat2_transporter
Participant: Family: VMAT/VAChT (SLC18) vesicular amine transporter family
Family:
VMAT/VAChT (SLC18) vesicular amine transporter familyPANTHER:PTHR23506
Representative Members: SLC18A2 (Homo sapiens)UniProtKB:Q05940 cat-1 (Caenorhabditis elegans)UniProtKB:Q9GNP0

Function

monoamine transmembrane transporter activityGO:0008504
Substrates: cytosolic monoamine
Products: luminal monoamine

Processes

aminergic neurotransmitter loading into synaptic vesicleGO:0015842

Locations

synaptic vesicle membraneGO:0030672

Fills vesicles with monoamines at aminergic terminals.

Acetylcholine loading (VAChT)Transport Stepacetylcholine_loading

VAChT, a paralog of VMAT in the SLC18 family, exchanges luminal protons for cytosolic acetylcholine at cholinergic terminals.

Annotons

Vesicular acetylcholine transporter
vacht_transporter
Participant: Family: VMAT/VAChT (SLC18) vesicular amine transporter family
Family:
VMAT/VAChT (SLC18) vesicular amine transporter familyPANTHER:PTHR23506
Representative Members: SLC18A3 (Homo sapiens)UniProtKB:Q16572 unc-17 (Caenorhabditis elegans)UniProtKB:P34711

Function

acetylcholine transmembrane transporter activityGO:0005277
Substrates: cytosolic acetylcholine
Products: luminal acetylcholine

Processes

neurotransmitter loading into synaptic vesicleGO:0098700

Locations

synaptic vesicle membraneGO:0030672

Fills vesicles with acetylcholine at cholinergic terminals.