TGF-beta receptor-SMAD signaling pathway module

A compact TGF-beta/SMAD signaling module. A dimeric TGF-beta family ligand binds type II and type I serine/threonine kinase receptors, the type II receptor activates the type I receptor, the type I receptor phosphorylates receptor-regulated SMADs, and SMAD complexes accumulate in the nucleus to regulate transcription. The module is grounded in GO:0007179. TGFB1 is anchored to PAINT TGF-beta-family nodes; receptors and SMADs are included as curated UniProt exemplars without PTN ancestry where local seed rows were not available.

MODULE:tgfb_smad_signalingDRAFTSignaling Pathwaymodules/tgfb_smad_signaling.yaml
transforming growth factor beta receptor signaling pathwayGO:0007179
GO:0007179
transforming growth factor beta receptor signaling pathway
The module is grounded in the GO biological process term for TGF-beta receptor signaling.
5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:tgfb_smad_signaling deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Reaction chaining (advisory)

✓ every PRECEDES step chains, or its break is acknowledged via chaining_status.

  • r_smad_activation → smad23_nuclear_import [NOT_CHECKED]

Function consistency and core coverage

1 gene-function check(s) reflected in core functions · 0 conflict(s) · 1 evidence or coverage gap(s) (3 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
tgfb_ligand TGFB1
UniProtKB:P01137
Family Representative
cytokine activity
GO:0005125
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
tgfb_receptors PROTEIN_COMPLEX
Gene
transmembrane receptor protein serine/threonine kinase activity
GO:0004675
Participant Unchecked
No direct UniProt participant to compare. Abstract selectors and complex-wide activities cannot be inferred from donor or subunit gene reviews.
tgfb_ligand TGF-beta family ligands
PANTHER:PTHR11848
Family
cytokine activity
GO:0005125
Family Review Missing
No supported structured family review is available for PANTHER:PTHR11848.

Gene-review completeness (4/6 grounded genes reviewed)

1 complete review(s) · 1 with deep research · 2 missing review · 3 reviewed but lacking deep research

Gene Review Complete Deep research
TGFBR1 P36897 ✗ — —
TGFBR2 P37173 ✗ — —
SMAD2 Q15796 ✓ 283/284 ✗
SMAD3 P84022 ✓ 333/349 ✓
SMAD4 Q13485 ✓ 422/428 ✗
TGFB1 P01137 ✓ ✓ ✗

Details

Context
plasma membraneGO:0005886 nucleusGO:0005634
TGF-beta receptor-SMAD signaling pathwaySignaling Pathwaytgfb_smad_signaling
transforming growth factor beta receptor signaling pathwayGO:0007179
Context
plasma membraneGO:0005886 nucleusGO:0005634

Connections

Ligand-bound receptors activate the type I kinase that phosphorylates SMAD2/3.
Phosphorylated SMAD2/3 leave the receptor, bind SMAD4 and are imported.
Nuclear SMAD2/3-SMAD4 complexes regulate TGF-beta target genes.
Part 1: ligand and receptor complex formation
TGF-beta ligand recruits type II/type I receptorsRegulatory Steptgfb_receptor_ligation

Mature dimeric TGF-beta ligand assembles a heterotetrameric receptor complex containing type II and type I receptor serine/threonine kinases.

Annotons

TGF-beta family ligand
tgfb_ligand
Participant: Family: TGF-beta family ligands
Family:
TGF-beta family ligandsPANTHER:PTHR11848
Representative Members: TGFB1UniProtKB:P01137

Function

cytokine activityGO:0005125
Targets: TGF-beta type II receptor TGF-beta type I receptor

Processes

transforming growth factor beta receptor signaling pathwayGO:0007179

Extracellular dimeric ligand that nucleates receptor complex formation.

Type II/type I TGF-beta receptor kinases
tgfb_receptors
Participant: Protein Complex: TGF-beta receptor kinase complex
Protein Complex:
TGF-beta receptor kinase complex TGFBR2 phosphorylates and activates TGFBR1/ALK5 in the ligand-bound receptor complex.
Active units:
TGFBR2
Participant: Gene Product: TGFBR2
Gene Product:
Role: type II receptor kinase
TGFBR1
Participant: Gene Product: TGFBR1
Gene Product:
Role: type I receptor kinase that phosphorylates receptor-regulated SMADs

Function

transmembrane receptor protein serine/threonine kinase activityGO:0004675

Ligand-assembled kinase complex that activates SMAD2/3.

Part 2: receptor-regulated SMAD phosphorylation
SMAD2/3 phosphorylation by activated type I receptorReactionr_smad_activation

Activated TGFBR1 phosphorylates the C-terminal SSXS motif of SMAD2 and SMAD3, licensing complex formation with SMAD4.

Annotons

Receptor-regulated SMADs
r_smad_effectors
Participant: Family: SMAD2/3 receptor-regulated SMADs
Family:
SMAD2/3 receptor-regulated SMADs
Representative Members: SMAD2UniProtKB:Q15796 SMAD3UniProtKB:P84022

Direct type I receptor substrates and signal carriers.

Part 3: SMAD2/3 nuclear import
SMAD2/3 nuclear importTransport Stepsmad23_nuclear_import

Receptor-phosphorylated SMAD2/3, with SMAD4, enter the nucleus through the karyopherin import cycle, included here by reference. Activated SMAD3 binds importin-beta1 directly through its N-terminal domain and is released by RanGTP; SMAD2 cannot bind importin-beta1 because of its exon-3 insert. Both depend on importin-7/8. This is the step that GO-CAM models compress into a single edge from the plasma-membrane type I receptor to a nuclear SMAD transcription factor activity (see projects/GOCAM_COMPARTMENTS.md).

Realized by module karyopherin_nuclear_protein_import

PMID:11294908
Transforming growth factor-beta induces nuclear import of Smad3 in an importin-beta1 and Ran-dependent manner.
Receptor-activated SMAD3 binds importin-beta1 through its N-terminal domain; SMAD2 does not.
Smad3, via its N-terminal domain, interacts specifically with importin-beta1 and only after activation by receptor.
PMID:17785517
Msk is required for nuclear import of TGF-{beta}/BMP-activated Smads.
Importin-7 and importin-8 are needed for nuclear accumulation of TGF-beta-activated SMAD2/3.
markedly impaired nuclear accumulation of Smad1 in response to BMP2 and of Smad2/3 in response to TGF-beta.
Part 4: nuclear SMAD transcriptional output
SMAD2/3-SMAD4 nuclear transcriptional complexesRegulatory Stepsmad_transcriptional_output

Phosphorylated SMAD2/3 bind SMAD4 and partner transcription factors, accumulate in the nucleus, and regulate TGF-beta target genes.

Annotons

SMAD4 common mediator
smad4_common_mediator
Participant: Gene Product: SMAD4
Gene Product:

Locations

nucleusGO:0005634

Co-SMAD that forms nuclear complexes with phosphorylated receptor-regulated SMADs.