Valine and isoleucine distal catabolism (acyl-CoA dehydrogenase -> propionyl-CoA)

After the shared, mitochondrial branched-chain aminotransferase (BCAT2) and branched-chain alpha-ketoacid dehydrogenase (BCKDH) steps deaminate and oxidatively decarboxylate the three branched-chain amino acids to their acyl-CoA thioesters, valine and isoleucine follow their own distal degradation routes in the mitochondrial matrix that converge on propionyl-CoA. In the VALINE route, isobutyryl-CoA is dehydrogenated by isobutyryl-CoA dehydrogenase (ACAD8, an FAD enzyme feeding electrons to ETF) to methacrylyl-CoA; the crotonase ECHS1 (curated elsewhere) hydrates this to (S)-3-hydroxyisobutyryl-CoA, which the crotonase-superfamily hydrolase HIBCH deacylates to free 3-hydroxyisobutyrate + CoA (a step thought to detoxify the reactive methacrylyl-CoA). 3-Hydroxy- isobutyrate dehydrogenase (HIBADH, NAD+) then oxidises it to (S)-methylmalonate semialdehyde, and the CoA-acylating aldehyde dehydrogenase ALDH6A1 (methylmalonate-semialdehyde dehydrogenase) oxidatively decarboxylates that to propionyl-CoA. In the ISOLEUCINE route, 2-methylbutyryl-CoA is dehydrogenated by the short/branched-chain acyl-CoA dehydrogenase ACADSB (FAD -> ETF) to tiglyl-CoA; ECHS1 hydrates it, and HSD17B10 (the moonlighting SDR protein MRPP2/HADH2, in its 2-methyl-3-hydroxybutyryl-CoA dehydrogenase role, NAD+) oxidises 2-methyl-3-hydroxybutyryl-CoA to 2-methylacetoacetyl-CoA, which the thiolase ACAT1 (curated elsewhere) cleaves to propionyl-CoA + acetyl-CoA. The propionyl-CoA produced by both routes enters the propionyl-CoA -> methylmalonyl-CoA -> succinyl-CoA anaplerotic pathway (PCC/MUT). Inherited defects at each step cause distinct organic acidurias (ACAD8: isobutyryl-CoA dehydrogenase deficiency; ACADSB: 2-methylbutyryl-CoA dehydrogenase deficiency; HIBCH and ALDH6A1: valine-pathway neurometabolic disease; HSD17B10: X-linked MHBD deficiency, which also impairs the protein's separate mitochondrial RNase P role).

MODULE:valine_isoleucine_distal_catabolismDRAFTMetabolic Pathwaymodules/valine_isoleucine_distal_catabolism.yaml
L-valine catabolic processGO:0006574 L-isoleucine catabolic processGO:0006550
GO:0006574
L-valine catabolic process
ACAD8/HIBCH/HIBADH/ALDH6A1 carry out the distal steps of L-valine catabolism (GO:0006574).
GO:0006550
L-isoleucine catabolic process
ACADSB and HSD17B10 carry out distal steps of L-isoleucine catabolism (GO:0006550).
file:human/ACAD8/ACAD8-ai-review.yaml
ACAD8 gene review (human)
The isobutyryl-CoA dehydrogenase step (UniProtKB:Q9UKU7, GO:0003853 + FAD) matches the completed human ACAD8 review.
file:human/HIBCH/HIBCH-ai-review.yaml
HIBCH gene review (human)
The 3-hydroxyisobutyryl-CoA hydrolase step (UniProtKB:Q6NVY1, GO:0003860) matches the completed human HIBCH review.
file:human/HIBADH/HIBADH-ai-review.yaml
HIBADH gene review (human)
The 3-hydroxyisobutyrate dehydrogenase step (UniProtKB:P31937, GO:0008442) matches the completed human HIBADH review.
file:human/ALDH6A1/ALDH6A1-ai-review.yaml
ALDH6A1 gene review (human)
The methylmalonate-semialdehyde dehydrogenase step (UniProtKB:Q02252, GO:0004491) matches the completed human ALDH6A1 review.
file:human/ACADSB/ACADSB-ai-review.yaml
ACADSB gene review (human)
The 2-methylbutyryl-CoA dehydrogenase step (UniProtKB:P45954, GO:0003853 + FAD) matches the completed human ACADSB review.
file:human/HSD17B10/HSD17B10-ai-review.yaml
HSD17B10 gene review (human)
The 2-methyl-3-hydroxybutyryl-CoA dehydrogenase (MHBD) step (UniProtKB:Q99714, GO:0047015) matches the completed human HSD17B10 review.
7Nodes
6Parts
0Variant Sets
0Variants
6Annotons
4Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:valine_isoleucine_distal_catabolism deep-research report alongside the module YAML.

Leaf nodes lacking representative members

✓ every leaf node grounds to a representative protein.

Template conformance

✓ every declared conforms_to bundle matches its template motif.

Function consistency and core coverage

6 gene-function check(s) reflected in core functions · 0 conflict(s) · 6 evidence or coverage gap(s) (12 comparison(s))

Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.

AnnotonParticipantFunctionAssessment
acad8_activity ACAD8 (human)
UniProtKB:Q9UKU7
Family Representative
short-chain 2-methyl fatty acyl-CoA dehydrogenase activity
GO:0003853
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
hibch_activity HIBCH (human)
UniProtKB:Q6NVY1
Family Representative
3-hydroxyisobutyryl-CoA hydrolase activity
GO:0003860
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
hibadh_activity HIBADH (human)
UniProtKB:P31937
Family Representative
3-hydroxyisobutyrate dehydrogenase activity
GO:0008442
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
aldh6a1_activity ALDH6A1 (human)
UniProtKB:Q02252
Family Representative
methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity
GO:0004491
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
acadsb_activity ACADSB (human)
UniProtKB:P45954
Family Representative
short-chain 2-methyl fatty acyl-CoA dehydrogenase activity
GO:0003853
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
hsd17b10_activity HSD17B10 (human)
UniProtKB:Q99714
Family Representative
3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity
GO:0047015
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass).
acad8_activity ACAD8 / isobutyryl-CoA dehydrogenase family
PANTHER:PTHR43831
Family
short-chain 2-methyl fatty acyl-CoA dehydrogenase activity
GO:0003853
Family Review Missing
No supported structured family review is available for PANTHER:PTHR43831.
hibch_activity HIBCH / 3-hydroxyisobutyryl-CoA hydrolase (crotonase) family
PANTHER:PTHR43176
Family
3-hydroxyisobutyryl-CoA hydrolase activity
GO:0003860
Family Review Missing
No supported structured family review is available for PANTHER:PTHR43176.
hibadh_activity HIBADH / 3-hydroxyisobutyrate dehydrogenase family
PANTHER:PTHR22981
Family
3-hydroxyisobutyrate dehydrogenase activity
GO:0008442
Family Function Unreviewed
Family review leaves GO:0008442 UNRESOLVED. 3-Hydroxyisobutyrate dehydrogenase activity is the function of the mitochondrial HIBADH orthologs (for example human P31937), but every reviewed member of the family sits in subfamily SF7, which also holds the enterobacterial 3-sulfolactaldehyde reductases YihU, the Pseudomonas aeruginosa NAD-dependent L-serine dehydrogenase and the Eubacterium barkeri 2-(hydroxymethyl)glutarate dehydrogenase. No PANTHER subfamily or PAINT node isolates the HIBADH clade, so neither family nor SF7 membership establishes the activity; it has to be decided per member.
aldh6a1_activity ALDH6A1 / methylmalonate-semialdehyde dehydrogenase family
PANTHER:PTHR43866
Family
methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity
GO:0004491
Family Review Missing
No supported structured family review is available for PANTHER:PTHR43866.
acadsb_activity ACADSB / short-branched-chain acyl-CoA dehydrogenase family
PANTHER:PTHR43884
Family
short-chain 2-methyl fatty acyl-CoA dehydrogenase activity
GO:0003853
Family Function Unreviewed
Family review leaves GO:0003995 UNRESOLVED. The inventory extends beyond acyl-CoA dehydrogenases to nitroalkane oxidases, monooxygenases and desulfinases; even SF12 mixes different reactions. Within the ACAD9 branch, direct protein-interaction studies show ECSIT-induced deflavination and loss of dehydrogenase activity during complex-I assembly (PMID:34646991). Catalytic potential and assembly function are alternative biochemical states, not evidence of constitutive pseudoenzyme inactivity. Neither substrate specificity nor complex-I assembly transfers to the entire family. A complete set of function-bearing branches is not delimited, so no exhaustive family or subfamily grant is asserted. For BACSU FadE O32176 in SF12, convergent yusJ and etfAB regulatory/growth phenotypes plus enzyme/ETF identities support a target-specific inferred ETF-linked activity, now accepted in the gene review. Direct transfer between isolated proteins remains unmeasured. That target inference does not delimit every function-bearing branch of this mixed family.
hsd17b10_activity HSD17B10 / type-2 3-hydroxyacyl-CoA dehydrogenase (SDR) family
PANTHER:PTHR43658
Family
3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity
GO:0047015
Family Review Missing
No supported structured family review is available for PANTHER:PTHR43658.

Gene-review completeness (6/6 grounded genes reviewed)

6 complete review(s) · 0 with deep research · 0 missing review · 6 reviewed but lacking deep research

Gene Review Complete Deep research
ACAD8 Q9UKU7 ✓ ✓ ✗
ACADSB P45954 ✓ ✓ ✗
ALDH6A1 Q02252 ✓ ✓ ✗
HIBADH P31937 ✓ ✓ ✗
HIBCH Q6NVY1 ✓ ✓ ✗
HSD17B10 Q99714 ✓ ✓ ✗

Details

Context
mitochondrial matrixGO:0005759
Valine and isoleucine distal catabolismMetabolic Pathwayvaline_isoleucine_distal_catabolism
L-valine catabolic processGO:0006574 L-isoleucine catabolic processGO:0006550
Context
mitochondrial matrixGO:0005759

Distal valine and isoleucine catabolism (GO:0006574 / GO:0006550), grounded to six completed human gene reviews, all mitochondrial-matrix enzymes from distinct PANTHER families. VALINE branch: ACAD8 (Q9UKU7 PTHR43831, GO:0003853 + FAD) -> [ECHS1] -> HIBCH (Q6NVY1 PTHR43176, GO:0003860) -> HIBADH (P31937 PTHR22981, GO:0008442 + NAD) -> ALDH6A1 (Q02252 PTHR43866, GO:0004491 acylating + GO:0018478) -> propionyl-CoA. ISOLEUCINE branch: ACADSB (P45954 PTHR43884, GO:0003853 + FAD) -> [ECHS1] -> HSD17B10 (Q99714 PTHR43658, GO:0047015 MHBD + NAD) -> [ACAT1 thiolase] -> propionyl-CoA + acetyl-CoA. Both branches feed propionyl-CoA into the PCC/MUT anaplerotic route (curated separately). ALDH6A1 is shared with pyrimidine/beta-alanine catabolism (malonate-semialdehyde -> acetyl-CoA, GO:0018478 / GO:0006210). HSD17B10 is a moonlighting protein: its second, non-catalytic role as the mt-RNase P subunit MRPP2 (mitochondrial tRNA 5'-processing and m1A9/m1G9 methylation) is documented in the HSD17B10 gene review and is deliberately NOT modelled as a metabolic node here. The FAD-linked ACAD8/ACADSB steps deposit electrons on ETF/ETFDH (curated in the flavin/ETF modules). GO term ids/labels verified against the local go.db. Disorders: ACAD8 IBDD; ACADSB 2-methylbutyryl-CoA dehydrogenase deficiency; HIBCH and ALDH6A1 valine-pathway neurometabolic disease; HSD17B10 X-linked MHBD deficiency.

Connections

acad8_ibd -> hibch_hydrolase Provides Input For
ACAD8 makes methacrylyl-CoA; the crotonase ECHS1 (curated elsewhere) hydrates it to (S)-3-hydroxyisobutyryl-CoA, the substrate deacylated by HIBCH.
hibch_hydrolase -> hibadh_dh Provides Input For
The 3-hydroxyisobutyrate released by HIBCH is oxidised by HIBADH.
hibadh_dh -> aldh6a1_mmsdh Provides Input For
HIBADH produces methylmalonate semialdehyde, the substrate for ALDH6A1.
acadsb_sbcad -> hsd17b10_mhbd Provides Input For
ACADSB makes tiglyl-CoA; ECHS1 (curated elsewhere) hydrates it to 2-methyl-3-hydroxybutyryl-CoA, the substrate oxidised by HSD17B10 (MHBD).
Part 1: valine - isobutyryl-CoA dehydrogenation
Isobutyryl-CoA dehydrogenase (ACAD8)Reactionacad8_ibd

Annotons

ACAD8: isobutyryl-CoA dehydrogenase
acad8_activity
Participant: Family: ACAD8 / isobutyryl-CoA dehydrogenase family
Family:
ACAD8 / isobutyryl-CoA dehydrogenase familyPANTHER:PTHR43831
Representative Members: ACAD8 (human)UniProtKB:Q9UKU7

Function

short-chain 2-methyl fatty acyl-CoA dehydrogenase activityGO:0003853
Substrates: isobutyryl-CoA electron-transfer flavoprotein (oxidized; via FAD)
Products: methacrylyl-CoA electron-transfer flavoprotein (reduced)

Locations

mitochondrial matrixGO:0005759

Dehydrogenates isobutyryl-CoA to methacrylyl-CoA (valine, FAD/ETF).

Part 2: valine - 3-hydroxyisobutyryl-CoA hydrolysis
3-Hydroxyisobutyryl-CoA hydrolase (HIBCH)Reactionhibch_hydrolase

Annotons

HIBCH: 3-hydroxyisobutyryl-CoA hydrolase
hibch_activity
Participant: Family: HIBCH / 3-hydroxyisobutyryl-CoA hydrolase (crotonase) family
Family:
HIBCH / 3-hydroxyisobutyryl-CoA hydrolase (crotonase) familyPANTHER:PTHR43176
Representative Members: HIBCH (human)UniProtKB:Q6NVY1

Function

3-hydroxyisobutyryl-CoA hydrolase activityGO:0003860
Substrates: (S)-3-hydroxyisobutyryl-CoA H2O
Products: 3-hydroxyisobutyrate coenzyme A

Locations

mitochondrial matrixGO:0005759

Hydrolyses 3-hydroxyisobutyryl-CoA to 3-hydroxyisobutyrate + CoA (valine).

Part 3: valine - 3-hydroxyisobutyrate oxidation
3-Hydroxyisobutyrate dehydrogenase (HIBADH)Reactionhibadh_dh

Annotons

HIBADH: 3-hydroxyisobutyrate dehydrogenase
hibadh_activity
Participant: Family: HIBADH / 3-hydroxyisobutyrate dehydrogenase family
Family:
HIBADH / 3-hydroxyisobutyrate dehydrogenase familyPANTHER:PTHR22981
Representative Members: HIBADH (human)UniProtKB:P31937

Function

3-hydroxyisobutyrate dehydrogenase activityGO:0008442
Substrates: 3-hydroxyisobutyrate NAD+
Products: (S)-methylmalonate semialdehyde NADH

Locations

mitochondrial matrixGO:0005759

Oxidises 3-hydroxyisobutyrate to methylmalonate semialdehyde (valine, NAD+).

Part 4: valine/pyrimidine - methylmalonate-semialdehyde oxidative decarboxylation
Methylmalonate-semialdehyde dehydrogenase (ALDH6A1)Reactionaldh6a1_mmsdh

Annotons

ALDH6A1: methylmalonate-semialdehyde dehydrogenase
aldh6a1_activity
Participant: Family: ALDH6A1 / methylmalonate-semialdehyde dehydrogenase family
Family:
ALDH6A1 / methylmalonate-semialdehyde dehydrogenase familyPANTHER:PTHR43866
Representative Members: ALDH6A1 (human)UniProtKB:Q02252

Function

methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activityGO:0004491
Substrates: (S)-methylmalonate semialdehyde coenzyme A NAD+
Products: propionyl-CoA CO2 NADH

Locations

mitochondrial matrixGO:0005759

Oxidatively decarboxylates methylmalonate semialdehyde to propionyl-CoA (valine).

Part 5: isoleucine - 2-methylbutyryl-CoA dehydrogenation
Short/branched-chain acyl-CoA dehydrogenase (ACADSB)Reactionacadsb_sbcad

Annotons

ACADSB: 2-methylbutyryl-CoA dehydrogenase
acadsb_activity
Participant: Family: ACADSB / short-branched-chain acyl-CoA dehydrogenase family
Family:
ACADSB / short-branched-chain acyl-CoA dehydrogenase familyPANTHER:PTHR43884
Representative Members: ACADSB (human)UniProtKB:P45954

Function

short-chain 2-methyl fatty acyl-CoA dehydrogenase activityGO:0003853
Substrates: (S)-2-methylbutyryl-CoA electron-transfer flavoprotein (oxidized; via FAD)
Products: tiglyl-CoA (2-methylbut-2-enoyl-CoA) electron-transfer flavoprotein (reduced)

Locations

mitochondrial matrixGO:0005759

Dehydrogenates 2-methylbutyryl-CoA to tiglyl-CoA (isoleucine, FAD/ETF).

Part 6: isoleucine - 2-methyl-3-hydroxybutyryl-CoA oxidation
2-Methyl-3-hydroxybutyryl-CoA dehydrogenase (HSD17B10)Reactionhsd17b10_mhbd

Annotons

HSD17B10 (MHBD): 2-methyl-3-hydroxybutyryl-CoA dehydrogenase
hsd17b10_activity
Participant: Family: HSD17B10 / type-2 3-hydroxyacyl-CoA dehydrogenase (SDR) family
Family:
HSD17B10 / type-2 3-hydroxyacyl-CoA dehydrogenase (SDR) familyPANTHER:PTHR43658
Representative Members: HSD17B10 (human)UniProtKB:Q99714

Function

3-hydroxy-2-methylbutyryl-CoA dehydrogenase activityGO:0047015
Substrates: (2S,3S)-2-methyl-3-hydroxybutyryl-CoA NAD+
Products: 2-methylacetoacetyl-CoA NADH

Locations

mitochondrial matrixGO:0005759

Oxidises 2-methyl-3-hydroxybutyryl-CoA to 2-methylacetoacetyl-CoA (isoleucine, NAD+).