Generic coat-mediated vesicle budding motif

The minimal, reusable vesicle-budding motif: a membrane-associated small GTPase (Arf or Sar1, switched on by its GEF) nucleates assembly of a protein coat on the donor membrane; coat adaptors capture transmembrane cargo and concentrate it into the forming bud; polymerization of the coat deforms the membrane and drives scission of a coated vesicle; and the coat is then shed (uncoating, often on GTP hydrolysis) to yield a transport-competent vesicle. The same motif is reused by the COPII (ER exit), COPI (Golgi-to-ER), and clathrin (post-Golgi/ endocytic) systems. The motif is gene-free and taxon-neutral, fixing only the coat, adaptor, and budding roles and the recruit -> capture -> bud -> uncoat topology. Grounded in GO:0006900 (vesicle budding from membrane).

MODULE:vesicle_coat_buddingDRAFTTransport Stepmodules/vesicle_coat_budding.yaml
vesicle budding from membraneGO:0006900
GO:0006900
vesicle budding from membrane
The motif culminates in coat-driven vesicle budding from the donor membrane.

Reusable conformance target. A node declares `conforms_to: [{template: vesicle_coat_budding}]` when a coat is recruited (typically by an Arf/Sar1 GTPase), captures cargo, deforms the membrane to bud a vesicle, and is shed. The coat identity (COPII/COPI/clathrin) and cargo are realization-specific. The GTPase-priming step is itself an instance of MODULE:gtpase_switch.

5Nodes
4Parts
0Variant Sets
0Variants
4Annotons
3Connections

Derived QC

Recommended-field compliance

100.0% recommended fields populated

All recommended fields populated.

Module deep research

✗ none found

No MODULE:vesicle_coat_budding deep-research report alongside the module YAML.

Leaf nodes lacking representative members

4 leaf node(s) with no concrete protein grounding:

Template conformance

every declared conforms_to bundle matches its template motif.

Gene-review completeness (0/0 grounded genes reviewed)

No concrete UniProt-grounded genes in this module.

Details

Coat recruitment -> cargo capture -> budding -> uncoatingTransport Stepvesicle_coat_budding
vesicle budding from membraneGO:0006900

Connections

coat_recruitment -> cargo_capture Provides Input For
The assembling coat recruits adaptors that capture cargo.
Cargo-laden coat polymerization drives budding and scission.
The budded vesicle is uncoated before fusion.
Part 1: coat recruitment
GTPase-primed coat recruitmentReactioncoat_recruitment

An activated Arf/Sar1 GTPase recruits coat subunits to the donor membrane.

Annotons

coat structural component
coat_activity
Participant: Any With Function: structural molecule activity
Required Function:
structural molecule activityGO:0005198

Function

structural molecule activityGO:0005198

Locations

vesicle coatGO:0030120

Nucleates the protein coat on the donor membrane.

Part 2: cargo capture
Coat-adaptor cargo captureRegulatory Stepcargo_capture

Coat adaptors select transmembrane cargo and concentrate it into the forming bud.

Annotons

protein-macromolecule adaptor activity
cargo_adaptor_activity
Participant: Any With Function: protein-macromolecule adaptor activity
Required Function:
protein-macromolecule adaptor activityGO:0030674

Function

protein-macromolecule adaptor activityGO:0030674
Targets: transmembrane cargo

Selects and concentrates cargo into the bud.

Part 3: membrane deformation and scission
Membrane deformation and vesicle scissionTransport Stepbudding_scission

Coat polymerization deforms the membrane and drives scission of a coated vesicle.

Annotons

vesicle budding
budding_node
Participant: Any Participant

Processes

vesicle budding from membraneGO:0006900

Deforms the membrane and releases the coated vesicle.

Part 4: uncoating
Coat shedding (uncoating)Reactionuncoating

The coat is shed (often on GTP hydrolysis) to yield a transport-competent vesicle.

Annotons

coat disassembly
uncoating_node
Participant: Any Participant

Sheds the coat to expose the fusion machinery.