Function
Locations
Phosphorylates B6 vitamers to their 5'-phosphates.
Pyridoxal 5'-phosphate (PLP) is the active form of vitamin B6 and the obligatory cofactor of ~140 human enzymes — transaminases, decarboxylases, racemases and others across amino-acid, one-carbon, heme and neurotransmitter metabolism. Because humans cannot synthesise the vitamin de novo, PLP is produced and homeostatically balanced by a small salvage pathway that interconverts the dietary B6 vitamers and their phosphorylated forms. Pyridoxal kinase (PDXK) phosphorylates the three unphosphorylated vitamers — pyridoxal, pyridoxine and pyridoxamine — with ATP (and a divalent metal) to pyridoxal 5'-phosphate (PLP), pyridoxine 5'-phosphate (PNP) and pyridoxamine 5'-phosphate (PMP). The FMN-dependent pyridoxine 5'-phosphate oxidase (PNPO) then carries out the terminal, rate-limiting step, oxidising PNP and PMP to the active PLP cofactor. Balancing this, the magnesium-dependent pyridoxal phosphatase PDXP (chronophin) dephosphorylates PLP back to pyridoxal, tuning intracellular PLP levels; PDXP also has a well-documented moonlighting role dephosphorylating the actin-regulatory protein cofilin (phospho-Ser3) to promote actin depolymerisation. Inherited PNPO deficiency causes a severe pyridoxal-5'-phosphate-responsive neonatal epileptic encephalopathy, underscoring how tightly neuronal PLP supply depends on this pathway.
All recommended fields populated.
✗ none found
No MODULE:vitamin_b6_plp_metabolism deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
3 complete review(s) · 0 with deep research · 0 missing review · 3 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| PDXK O00764 | ✓ | ✓ | ✗ |
| PDXP Q96GD0 | ✓ | ✓ | ✗ |
| PNPO Q9NVS9 | ✓ | ✓ | ✗ |
Vitamin B6 / pyridoxal 5'-phosphate salvage and homeostasis (GO:0009443 / GO:0042816), grounded to the completed human gene reviews: PDXK (O00764, GO:0008478 pyridoxal kinase + Mg/Zn), PNPO (Q9NVS9, GO:0004733 pyridoxamine-phosphate oxidase + FMN GO:0010181, terminal rate-limiting PLP-producing step) and PDXP/chronophin (Q96GD0, GO:0033883 pyridoxal phosphatase + Mg; with a genuine second role as a cofilin/ADF phospho-Ser3 phosphatase, GO:0004721, regulating actin depolymerisation). All three are cytosolic (distinct PANTHER families). PLP is the cofactor of the many PLP-dependent enzymes curated across these modules (transaminases GOT1/2/OAT/AADAT/PSAT1, kynureninase KYNU, serine hydroxymethyltransferases SHMT1/2, etc.). GO term ids/labels verified against the local go.db. Disorders: PNPO deficiency — pyridoxal-5'-phosphate-responsive neonatal epileptic encephalopathy; PDXK variants — polyneuropathy; dysregulated PLP homeostasis affects neurotransmitter (GABA/dopamine/serotonin) synthesis.
Phosphorylates B6 vitamers to their 5'-phosphates.
Oxidises PNP/PMP to the active cofactor PLP (rate-limiting).
Dephosphorylates PLP to pyridoxal (homeostasis; also a cofilin phosphatase).