summary:
  generated: '2026-10-14'
  n_gene_folders: 282
  n_gene_reviews: 282
  folders_without_review: []
  review_status:
    DRAFT: 68
    COMPLETE: 184
    None: 7
    INITIALIZED: 22
    IN_PROGRESS: 1
  n_annotations: 8746
  n_annotations_pending: 0
  action_totals:
    ACCEPT: 3797
    KEEP_AS_NON_CORE: 1830
    MODIFY: 1281
    REMOVE: 1043
    MARK_AS_OVER_ANNOTATED: 552
    NEW: 185
    UNDECIDED: 58
  evidence_class_totals:
    experimental: 5723
    electronic: 1558
    phylogenetic: 677
    similarity: 448
    author/curator: 340
  n_reviews_with_deep_research: 197
  n_reviews_with_bioinformatics: 4
  n_reviews_with_no_core_functions: 1
  n_reviews_in_a_module: 211
  n_reviews_in_a_family_review: 10
  n_modules: 40
  n_family_reviews: 9
  n_gocam_models_indexed: 1
action_by_evidence_class:
  experimental:
    ACCEPT: 1868
    KEEP_AS_NON_CORE: 1383
    MODIFY: 943
    REMOVE: 906
    MARK_AS_OVER_ANNOTATED: 424
    NEW: 156
    UNDECIDED: 43
  electronic:
    ACCEPT: 946
    KEEP_AS_NON_CORE: 275
    MODIFY: 216
    MARK_AS_OVER_ANNOTATED: 69
    REMOVE: 45
    UNDECIDED: 5
    NEW: 2
  similarity:
    ACCEPT: 275
    REMOVE: 67
    MODIFY: 52
    KEEP_AS_NON_CORE: 27
    MARK_AS_OVER_ANNOTATED: 19
    UNDECIDED: 5
    NEW: 3
  phylogenetic:
    ACCEPT: 493
    KEEP_AS_NON_CORE: 93
    MODIFY: 39
    REMOVE: 24
    MARK_AS_OVER_ANNOTATED: 24
    UNDECIDED: 2
    NEW: 2
  author/curator:
    ACCEPT: 215
    KEEP_AS_NON_CORE: 52
    MODIFY: 31
    NEW: 22
    MARK_AS_OVER_ANNOTATED: 16
    UNDECIDED: 3
    REMOVE: 1
most_removed_terms:
- id: GO:0005515
  label: protein binding
  count: 863
  total_rows: 1954
- id: GO:0009507
  label: chloroplast
  count: 26
  total_rows: 95
- id: GO:0005739
  label: mitochondrion
  count: 13
  total_rows: 26
- id: GO:0005634
  label: nucleus
  count: 12
  total_rows: 621
- id: GO:0009739
  label: response to gibberellin
  count: 6
  total_rows: 27
- id: GO:0000160
  label: phosphorelay signal transduction system
  count: 6
  total_rows: 21
- id: GO:0005576
  label: extracellular region
  count: 6
  total_rows: 17
- id: GO:0005737
  label: cytoplasm
  count: 5
  total_rows: 181
- id: GO:0016787
  label: hydrolase activity
  count: 5
  total_rows: 7
- id: GO:0005886
  label: plasma membrane
  count: 4
  total_rows: 232
- id: GO:0000976
  label: transcription cis-regulatory region binding
  count: 4
  total_rows: 97
- id: GO:0009736
  label: cytokinin-activated signaling pathway
  count: 4
  total_rows: 23
- id: GO:0005829
  label: cytosol
  count: 3
  total_rows: 60
- id: GO:0003700
  label: DNA-binding transcription factor activity
  count: 3
  total_rows: 244
- id: GO:0044183
  label: protein folding chaperone
  count: 3
  total_rows: 4
most_modified_terms:
- id: GO:0005515
  label: protein binding
  count: 744
  total_rows: 1954
- id: GO:0003700
  label: DNA-binding transcription factor activity
  count: 77
  total_rows: 244
- id: GO:0003677
  label: DNA binding
  count: 52
  total_rows: 101
- id: GO:0006355
  label: regulation of DNA-templated transcription
  count: 23
  total_rows: 130
- id: GO:0016020
  label: membrane
  count: 13
  total_rows: 47
- id: GO:0007165
  label: signal transduction
  count: 8
  total_rows: 27
- id: GO:0004672
  label: protein kinase activity
  count: 8
  total_rows: 48
- id: GO:0004674
  label: protein serine/threonine kinase activity
  count: 8
  total_rows: 47
- id: GO:0009416
  label: response to light stimulus
  count: 8
  total_rows: 23
- id: GO:0016709
  label: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular
    oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen
  count: 8
  total_rows: 8
- id: GO:0030154
  label: cell differentiation
  count: 7
  total_rows: 13
- id: GO:0042802
  label: identical protein binding
  count: 7
  total_rows: 62
- id: GO:0072387
  label: flavin adenine dinucleotide metabolic process
  count: 7
  total_rows: 7
- id: GO:0046983
  label: protein dimerization activity
  count: 6
  total_rows: 26
- id: GO:0006952
  label: defense response
  count: 6
  total_rows: 26
most_over_annotated_terms:
- id: GO:0005515
  label: protein binding
  count: 249
  total_rows: 1954
- id: GO:0005739
  label: mitochondrion
  count: 12
  total_rows: 26
- id: GO:0042802
  label: identical protein binding
  count: 10
  total_rows: 62
- id: GO:0003700
  label: DNA-binding transcription factor activity
  count: 9
  total_rows: 244
- id: GO:0005634
  label: nucleus
  count: 8
  total_rows: 621
- id: GO:0005737
  label: cytoplasm
  count: 7
  total_rows: 181
- id: GO:0005829
  label: cytosol
  count: 6
  total_rows: 60
- id: GO:0007165
  label: signal transduction
  count: 6
  total_rows: 27
- id: GO:0005524
  label: ATP binding
  count: 5
  total_rows: 52
- id: GO:0000325
  label: plant-type vacuole
  count: 5
  total_rows: 9
- id: GO:0009414
  label: response to water deprivation
  count: 5
  total_rows: 46
- id: GO:0042742
  label: defense response to bacterium
  count: 5
  total_rows: 53
- id: GO:1901701
  label: cellular response to oxygen-containing compound
  count: 5
  total_rows: 5
- id: GO:0000976
  label: transcription cis-regulatory region binding
  count: 5
  total_rows: 97
- id: GO:0009682
  label: induced systemic resistance
  count: 5
  total_rows: 12
most_proposed_new_terms:
- id: GO:0003714
  label: transcription corepressor activity
  count: 6
  total_rows: 7
- id: GO:1990756
  label: ubiquitin-like ligase-substrate adaptor activity
  count: 5
  total_rows: 7
- id: GO:0035098
  label: ESC/E(Z) complex
  count: 5
  total_rows: 7
- id: GO:0001216
  label: DNA-binding transcription activator activity
  count: 4
  total_rows: 5
- id: GO:1902348
  label: cellular response to strigolactone
  count: 4
  total_rows: 5
- id: GO:2000032
  label: regulation of secondary shoot formation
  count: 3
  total_rows: 7
- id: GO:0009734
  label: auxin-activated signaling pathway
  count: 3
  total_rows: 10
- id: GO:0019761
  label: glucosinolate biosynthetic process
  count: 3
  total_rows: 29
- id: GO:0010093
  label: specification of floral organ identity
  count: 3
  total_rows: 11
- id: GO:0030674
  label: protein-macromolecule adaptor activity
  count: 3
  total_rows: 3
- id: GO:0140297
  label: DNA-binding transcription factor binding
  count: 3
  total_rows: 3
- id: GO:0045814
  label: negative regulation of gene expression, epigenetic
  count: 3
  total_rows: 9
- id: GO:0035591
  label: signaling adaptor activity
  count: 3
  total_rows: 3
- id: GO:0001228
  label: DNA-binding transcription activator activity, RNA polymerase II-specific
  count: 3
  total_rows: 3
- id: GO:0110104
  label: mRNA alternative polyadenylation
  count: 3
  total_rows: 3
projects:
- project: ARATH_HEAT_STRESS
  title: Arabidopsis Heat Stress Gene Curation Project
  species:
  - ARATH
- project: ARATH_SINGLE_CELL_FUNGAL
  title: Arabidopsis Single-Cell Response to Fungal Infection
  species:
  - ARATH
- project: BIOREASON_COMPARISON
  title: BioReason-Pro Comparison Project
  species:
  - human
  - mouse
  - rat
  - worm
  - yeast
  - SCHPO
  - DROME
  - ARATH
  - ECOLI
  - BACSU
  - PSEPK
  - 9CAUD
  - AGKCO
  - ANOGA
- project: BIOSENSORS
  title: Plant-Encoded Sense & Response Biosensors
  species:
  - ARATH
- project: CASPL_FAMILY
  title: CASP-like (CASPL) family curation
  species:
  - ARATH
  - POPTR
- project: CO2_CONCENTRATING_MECHANISMS
  title: CO2-Concentrating Mechanisms
  species:
  - CHLRE
  - ARATH
- project: COMPLEXPORTAL
  title: Complex Portal Annotation Correctness
  species:
  - human
  - yeast
  - DROME
  - worm
  - SCHPO
  - mouse
  - ECOLI
  - ARATH
  - rat
- project: ER_PM_TETHERING_OBSOLETION
  title: "ER\u2013Plasma Membrane Tethering \u2014 Obsoletion & Replacement (GO:0061817)"
  species:
  - human
  - yeast
  - ARATH
- project: GERANYLGERANYL_REDUCTASE_OBSOLETION
  title: "Geranylgeranyl Reductase Activity \u2014 Obsoletion & Replacement"
  species:
  - human
  - ARATH
  - TOBAC
- project: IEP
  title: Inferred from Expression Pattern (IEP) Evidence Code Review
  species:
  - rat
  - ARATH
  - human
  - worm
  - DICDI
  - ECOLI
  - ORYSJ
  - MEDTR
  - mouse
  - yeast
  - DROME
- project: KAURENE_OXIDATION_OBSOLETION
  title: "Ent-Kaurene Oxidation to Kaurenoic Acid \u2014 Obsoletion & Replacement"
  species:
  - ARATH
  - ORYSJ
- project: MISCITATIONS
  title: Miscitation Review Project
  species:
  - human
  - ARATH
- project: NLS_BINDING_OBSOLETION
  title: "Nuclear Localization Sequence Binding \u2014 Obsoletion & Replacement"
  species:
  - human
  - yeast
  - rat
  - DROME
  - worm
  - ARATH
- project: NOT_ANNOTATION_USAGE
  title: NOT Annotation Usage Audit
  species:
  - human
  - rat
  - ARATH
  - SCHPO
- project: OMICS_EVIDENCE
  title: Omics and High-Throughput Evidence in GO Annotation
  species:
  - human
  - yeast
  - SCHPO
  - ARATH
- project: PHOTOSYNTHESIS
  title: Photosynthesis Project
  species:
  - CHLRE
  - ARATH
- project: PLANT_BIOENERGY
  title: Plant Bioenergy Modules
  species:
  - ARATH
  - POPTR
  - SORBI
- project: PLANT_FUNGAL_INTERACTIONS
  title: Plant-Fungal Interactions
  species:
  - ARATH
  - ORYSJ
  - HORVU
  - MEDTR
  - LOTJA
  - PYRO7
  - FULFL
  - MYCMD
  - GIBZE
  - SOLPI
  - SOLHA
  - PYROR
  - FUSOX
- project: PREPHENATE_PATHWAY_OBSOLETION
  title: "Aromatic Amino Acid Biosynthetic Process, Prephenate Pathway \u2014 Obsoletion"
  species:
  - ARATH
  - PETHY
  - MYCTU
- project: PROTNLM_EVALUATION
  title: ProtNLM2 Evaluation
  species:
  - human
  - HORSE
  - 9PRIM
  - ABRPR
  - AEDAE
  - AQUCT
  - ARAHY
  - ARATH
  - ARTAN
  - ASPOR
  - BALMU
  - BORPE
  - BOVIN
  - CAEEL
  - CALMI
  - CANLF
  - CHRVO
  - COLLI
  - COTJA
  - CUCME
  - DANRE
  - DEIRA
  - DROME
  - DROPS
  - DROVI
  - GADMO
  - GIBF5
  - JUGRE
  - MACFA
  - MAIZE
  - MYTGA
  - NEUCR
  - ORYSI
  - ORYSJ
  - PANPA
  - PARTE
  - PHATC
  - RABIT
  - SCHPO
  - SOYBN
  - STRCO
  - TAKRU
  - TOBAC
  - TRIV3
  - WHEAT
  - XANCP
  - XENLA
  - XENNA
  - XENTR
  - mouse
  - rat
  - worm
- project: QUANTUM_SENSING
  title: Quantum Sensing Proteins and Engineering Chassis
  species:
  - DROME
  - ARATH
  - human
- project: SPKW
  title: SwissProt Keywords (SPKW) Unique Terms Project
  species:
  - human
  - SCHPO
  - ANOGA
  - DROME
  - PSEPK
  - ARATH
  - BPT4
  - ECO57
- project: TCDB
  title: "TCDB \u2192 GO Transporter-Activity Mapping & Gap Project"
  species:
  - ARATH
  - human
- project: THLAR_OILSEED
  title: Pennycress (Thlaspi arvense) Oilseed Domestication Genes
  species:
  - THLAR
  - ARATH
- project: TOP_NOTS
  title: 'Top-Nots: Candidate NOT Annotations from Existing Reviews'
  species:
  - human
  - mouse
  - yeast
  - SCHPO
  - DROME
  - ANOGA
  - ACET2
  - BACSU
  - DESVH
  - ECOLI
  - METEA
  - METTP
  - PSEAE
  - PSEPK
  - SACEN
  - SALTY
  - STRCO
  - CANGA
  - CLOCL
  - ARATH
  - worm
- project: UNFOLDED_PROTEIN_BINDING
  title: Unfolded Protein Binding Annotation Review
  species:
  - human
  - mouse
  - rat
  - yeast
  - SCHPO
  - DROME
  - DANRE
  - ARATH
  - BOVIN
  - CANAL
  - CRIGR
  - ECOLI
  - NEUCR
  - ASPNG
  - SALTY
  - HYPJE
  - worm
modules:
- module: aliphatic_glucosinolate_myrosinase_defense
  title: Aliphatic glucosinolate biosynthesis and myrosinase activation (glucosinolate-myrosinase defense
    system)
  status: DRAFT
  arath_reviewed_members:
  - AOP2
  - BCAT3
  - BCAT4
  - CYP79F1
  - CYP79F2
  - CYP83A1
  - ESP
  - FMOGS-OX1
  - GGP1
  - GSTF11
  - GSTU20
  - IIL1
  - IMDH1
  - MAM1
  - MAM3
  - NSP1
  - SOT17
  - SOT18
  - SSU3
  - SUR1
  - TGG1
  - TGG2
  - UGT74C1
- module: autonomous_flowering_pathway
  title: Autonomous flowering pathway repressing FLOWERING LOCUS C (Arabidopsis)
  status: DRAFT
  arath_reviewed_members:
  - FCA
  - FLC
  - FLD
  - FPA
  - FT
  - FVE
  - FY
  - LD
  - SOC1
- module: auxin_nuclear_signaling
  title: Nuclear auxin signaling (TIR1/AFB-Aux/IAA-TOPLESS-ARF module)
  status: DRAFT
  arath_reviewed_members:
  - AFB2
  - ARF19
  - ARF5
  - ARF7
  - IAA12
  - IAA17
  - TIR1
  - TPL
- module: auxin_polar_transport
  title: Polar (cell-to-cell) auxin transport
  status: DRAFT
  arath_reviewed_members:
  - ABCB19
  - AUX1
  - D6PK
  - PID
  - PIN1
  - PIN2
- module: brassinosteroid_signaling
  title: Brassinosteroid signal perception and relay to BZR1/BES1 transcription factors
  status: DRAFT
  arath_reviewed_members:
  - BAK1
  - BES1
  - BIN2
  - BKI1
  - BRI1
  - BSK1
  - BSU1
  - BZR1
- module: camalexin_biosynthesis
  title: Camalexin biosynthesis (tryptophan-derived indole phytoalexin)
  status: DRAFT
  arath_reviewed_members:
  - CYP71A12
  - CYP71A13
  - CYP71B15
  - CYP79B2
  - CYP79B3
  - GGP1
  - GSTF6
  - MPK3
  - MPK6
  - WRKY33
- module: carotene_backbone_biosynthesis
  title: "Carotenoid biosynthesis I \u2014 carotene backbone (GGPP -> phytoene -> lycopene -> cyclic carotenes)"
  status: DRAFT
  arath_reviewed_members:
  - CRTISO
  - LCYB
  - LCYE
  - PDS
  - PSY
  - Z-ISO
  - ZDS
- module: cellulose_biosynthesis
  title: Plant cellulose biosynthesis module
  status: DRAFT
  arath_reviewed_members: []
- module: chitin_perception
  title: Plant chitin perception by LysM receptor complexes
  status: DRAFT
  arath_reviewed_members:
  - BIK1
  - CERK1
  - LYK4
  - LYK5
  - MAPKKK5
  - MKK4
  - MKK5
  - MPK3
  - MPK6
  - PBL1
  - PBL27
  - RBOHD
- module: cytokinin_two_component_signaling
  title: Cytokinin two-component (His-Asp phosphorelay) signaling in Arabidopsis
  status: DRAFT
  arath_reviewed_members:
  - AHK2
  - AHK3
  - AHK4
  - AHP1
  - ARR1
  - ARR12
  - ARR5
- module: er_unfolded_protein_response
  title: Endoplasmic reticulum unfolded protein response
  status: DRAFT
  arath_reviewed_members: []
- module: ethylene_signaling
  title: Ethylene signaling (ETR/ERS receptor-CTR1-EIN2-EBF-EIN3/EIL1 module)
  status: DRAFT
  arath_reviewed_members:
  - CTR1
  - EBF1
  - EBF2
  - EIL1
  - EIN2
  - EIN3
  - ERS1
  - ETR1
- module: eukaryotic_thiamine_biosynthesis
  title: Eukaryotic (THI4/THI5-type) de novo thiamine diphosphate biosynthesis
  status: DRAFT
  arath_reviewed_members: []
- module: fatty_acid_elongation_cycle
  title: Microsomal fatty-acid elongation cycle (ELOVL or KCS -> KAR -> HACD -> ECR)
  status: DRAFT
  arath_reviewed_members:
  - CUT1
  - ECR
  - FAE1
  - KCR1
  - PAS2
- module: floral_meristem_identity
  title: Specification of floral meristem identity at the Arabidopsis shoot apex
  status: DRAFT
  arath_reviewed_members:
  - AP1
  - AP2
  - CAL
  - FD
  - FT
  - FUL
  - LFY
  - SOC1
  - TFL1
  - UFO
- module: floral_organ_identity_abce
  title: ABCE model of floral organ identity (MADS floral quartets)
  status: DRAFT
  arath_reviewed_members:
  - AG
  - AP1
  - AP2
  - AP3
  - PI
  - SEP1
  - SEP2
  - SEP3
  - SEP4
- module: folate_one_carbon_interconversion
  title: Folate one-carbon carrier-state interconversion
  status: DRAFT
  arath_reviewed_members: []
- module: gibberellin_biosynthesis
  title: Bioactive gibberellin (GA4/GA1) biosynthesis from geranylgeranyl diphosphate
  status: DRAFT
  arath_reviewed_members:
  - GA1
  - GA2
  - GA20OX1
  - GA3
  - GA3OX1
  - KAO1
  - KAO2
- module: gibberellin_della_signaling
  title: Gibberellin perception and DELLA derepression (GID1-DELLA-SCF(SLY1) module)
  status: DRAFT
  arath_reviewed_members:
  - GAI
  - GID1A
  - GID1B
  - GID1C
  - PIF3
  - PIF4
  - RGA
  - SLY1
- module: jasmonate_coi1_jaz_signaling
  title: Jasmonate perception and JAZ derepression (JAR1-COI1-JAZ-NINJA/TPL-MYC module)
  status: DRAFT
  arath_reviewed_members:
  - COI1
  - JAR1
  - JAZ1
  - MYC2
  - MYC3
  - NINJA
  - TPL
- module: lignin_monolignol_biosynthesis
  title: Plant lignin (monolignol) biosynthesis module
  status: DRAFT
  arath_reviewed_members:
  - PAL1
- module: linc_complex
  title: LINC complex (SUN-KASH nuclear envelope bridge) module
  status: DRAFT
  arath_reviewed_members:
  - SUN1
  - SUN2
  - WIP1
- module: methionine_biosynthesis
  title: L-methionine biosynthesis (from homoserine)
  status: DRAFT
  arath_reviewed_members: []
- module: photoperiodic_flowering_co_ft
  title: Photoperiodic (long-day) flowering via the CONSTANS-FLOWERING LOCUS T pathway (Arabidopsis)
  status: DRAFT
  arath_reviewed_members:
  - CDF1
  - CO
  - COP1
  - CRY2
  - FD
  - FKF1
  - FT
  - GI
  - PHYA
  - SOC1
  - SPA1
  - ZTL
- module: photosynthesis
  title: Oxygenic photosynthesis module
  status: DRAFT
  arath_reviewed_members: []
- module: phytochrome_photomorphogenesis
  title: Phytochrome control of photomorphogenesis (phyA/phyB - PIF - COP1/SPA - HY5)
  status: DRAFT
  arath_reviewed_members:
  - COP1
  - CRY1
  - HY5
  - PHYA
  - PHYB
  - PIF1
  - PIF3
  - PIF4
  - SPA1
- module: plant_circadian_clock_oscillator
  title: Arabidopsis core circadian oscillator (CCA1/LHY - PRR - evening complex - ZTL)
  status: DRAFT
  arath_reviewed_members:
  - CCA1
  - ELF3
  - ELF4
  - GI
  - LHY
  - LUX
  - PRR5
  - PRR7
  - PRR9
  - TOC1
  - ZTL
- module: plant_nlr_resistosome_signaling
  title: Plant NLR resistosome activation and signalling
  status: DRAFT
  arath_reviewed_members:
  - EDS1
  - PAD4
- module: pyrenoid_ccm
  title: Pyrenoid-based CO2-concentrating mechanism
  status: DRAFT
  arath_reviewed_members: []
- module: root_radial_patterning_shr_scr
  title: Root ground-tissue radial patterning by the SHORT-ROOT-SCARECROW-BIRD module
  status: DRAFT
  arath_reviewed_members:
  - CYCD6-1
  - JKD
  - MGP
  - SCR
  - SHR
  - WOX5
- module: seed_triacylglycerol_biosynthesis
  title: Plant seed triacylglycerol (oil) biosynthesis module
  status: DRAFT
  arath_reviewed_members:
  - DGAT1
- module: shoot_meristem_clv_wus_feedback
  title: CLAVATA-WUSCHEL negative feedback loop in shoot apical meristem stem-cell homeostasis
  status: DRAFT
  arath_reviewed_members:
  - BAM1
  - CLV1
  - CLV2
  - CLV3
  - CRN
  - STM
  - WUS
- module: siroheme_biosynthesis
  title: Siroheme biosynthesis from uroporphyrinogen III
  status: DRAFT
  arath_reviewed_members: []
- module: stomatal_lineage_development
  title: Stomatal lineage progression and spacing (EPF-ERECTA-YODA-MAPK and SPCH/MUTE/FAMA-SCRM)
  status: DRAFT
  arath_reviewed_members:
  - EPF2
  - ERECTA
  - FAMA
  - ICE1
  - MKK4
  - MKK5
  - MPK3
  - MPK6
  - MUTE
  - SPCH
  - TMM
  - YDA
- module: strigolactone_signaling_shoot_branching
  title: Strigolactone perception and D14-MAX2-SMXL signalling in shoot-branching control
  status: DRAFT
  arath_reviewed_members:
  - BRC1
  - D14
  - MAX2
  - SMXL6
  - SMXL7
  - SMXL8
- module: tetrahydrofolate_biosynthesis
  title: De novo tetrahydrofolate and folylpolyglutamate biosynthesis
  status: DRAFT
  arath_reviewed_members: []
- module: triacylglycerol_biosynthesis
  title: Glycerolipid / triacylglycerol biosynthesis (glycerol-3-phosphate and DHAP routes)
  status: DRAFT
  arath_reviewed_members: []
- module: trichome_initiation_mbw
  title: Leaf trichome initiation and patterning by the MYB-bHLH-WD40 activator complex and R3 MYB lateral
    inhibitors
  status: DRAFT
  arath_reviewed_members:
  - CPC
  - EGL3
  - GL1
  - GL2
  - GL3
  - TRY
  - TTG1
- module: vernalization_flc_silencing
  title: FRIGIDA-dependent FLC activation and vernalization-induced Polycomb silencing of FLC
  status: DRAFT
  arath_reviewed_members:
  - CLF
  - FIE
  - FLC
  - FRI
  - FT
  - LHP1
  - MSI1
  - SOC1
  - SVP
  - SWN
  - VAL1
  - VIN3
  - VRN1
  - VRN2
  - VRN5
- module: xylan_biosynthesis
  title: Plant xylan (glucuronoxylan) biosynthesis module
  status: DRAFT
  arath_reviewed_members: []
families:
- family_id: PANTHER:PTHR10782
  family_name: ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN
  functional_coherence: MOSTLY_COHERENT
  arath_reviewed_members:
  - SIZ1
  path: interpro/panther/PTHR10782/PTHR10782-review.yaml
- family_id: PANTHER:PTHR11654
  family_name: OLIGOPEPTIDE TRANSPORTER-RELATED
  functional_coherence: HETEROGENEOUS
  arath_reviewed_members:
  - CHL1
  path: interpro/panther/PTHR11654/PTHR11654-review.yaml
- family_id: PANTHER:PTHR11706
  family_name: SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
  functional_coherence: HETEROGENEOUS
  arath_reviewed_members:
  - EIN2
  path: interpro/panther/PTHR11706/PTHR11706-review.yaml
- family_id: PANTHER:PTHR12911
  family_name: SAD1/UNC-84-LIKE PROTEIN-RELATED
  functional_coherence: MOSTLY_COHERENT
  arath_reviewed_members:
  - SUN1
  - SUN2
  path: interpro/panther/PTHR12911/PTHR12911-review.yaml
- family_id: PANTHER:PTHR14773
  family_name: WD REPEAT-CONTAINING PROTEIN 76
  functional_coherence: MOSTLY_COHERENT
  arath_reviewed_members:
  - DRS1
  path: interpro/panther/PTHR14773/PTHR14773-review.yaml
- family_id: PANTHER:PTHR43655
  family_name: ATP-DEPENDENT PROTEASE
  functional_coherence: HETEROGENEOUS
  arath_reviewed_members:
  - FTSH12
  path: interpro/panther/PTHR43655/PTHR43655-review.yaml
- family_id: PANTHER:PTHR44329
  family_name: SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
  functional_coherence: HETEROGENEOUS
  arath_reviewed_members:
  - CTR1
  path: interpro/panther/PTHR44329/PTHR44329-review.yaml
- family_id: PANTHER:PTHR47821
  family_name: PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN
  functional_coherence: UNKNOWN
  arath_reviewed_members:
  - AT4G38370
  path: interpro/panther/PTHR47821/PTHR47821-review.yaml
- family_id: PANTHER:PTHR48004
  family_name: OS01G0149700 PROTEIN
  functional_coherence: UNKNOWN
  arath_reviewed_members:
  - F4JLB7
  path: interpro/panther/PTHR48004/PTHR48004-review.yaml
gocams:
- model_id: 67e5e74400000148
  title: Arabidopsis MRG domain proteins bridge two histone modifications
  genes:
  - ASHH2 Atal
  - ASHH3 Atal
  - MRG2 Atal
  - SCL27 Atal
genes:
- folder: ABCB19
  id: Q9LJX0
  gene_symbol: ABCB19
  status: DRAFT
  n_annotations: 73
  n_pending: 0
  actions:
    REMOVE: 3
    KEEP_AS_NON_CORE: 47
    ACCEPT: 22
    MARK_AS_OVER_ANNOTATED: 1
  evidence_classes:
    experimental: 48
    electronic: 20
    similarity: 2
    phylogenetic: 3
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 24
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ABCG36
  id: Q9XIE2
  gene_symbol: ABCG36
  status: COMPLETE
  n_annotations: 108
  n_pending: 0
  actions:
    MARK_AS_OVER_ANNOTATED: 18
    KEEP_AS_NON_CORE: 39
    MODIFY: 9
    ACCEPT: 40
    REMOVE: 2
  evidence_classes:
    experimental: 98
    electronic: 9
    similarity: 1
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 37
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ABI1
  id: P49597
  gene_symbol: ABI1
  status: COMPLETE
  n_annotations: 56
  n_pending: 0
  actions:
    ACCEPT: 16
    KEEP_AS_NON_CORE: 6
    UNDECIDED: 12
    MODIFY: 7
    MARK_AS_OVER_ANNOTATED: 2
    REMOVE: 13
  evidence_classes:
    author/curator: 4
    experimental: 42
    electronic: 8
    phylogenetic: 1
    similarity: 1
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 52
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ABI5
  id: Q9SJN0
  gene_symbol: ABI5
  status: DRAFT
  n_annotations: 45
  n_pending: 0
  actions:
    ACCEPT: 24
    MARK_AS_OVER_ANNOTATED: 2
    KEEP_AS_NON_CORE: 9
    REMOVE: 9
    MODIFY: 1
  evidence_classes:
    electronic: 11
    experimental: 27
    similarity: 3
    author/curator: 4
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 29
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AFB2
  id: Q9LW29
  gene_symbol: AFB2
  status: COMPLETE
  n_annotations: 17
  n_pending: 0
  actions:
    MARK_AS_OVER_ANNOTATED: 1
    KEEP_AS_NON_CORE: 1
    MODIFY: 2
    ACCEPT: 13
  evidence_classes:
    experimental: 4
    similarity: 5
    electronic: 3
    phylogenetic: 5
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 15
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AG
  id: P17839
  gene_symbol: AG
  status: COMPLETE
  n_annotations: 30
  n_pending: 0
  actions:
    ACCEPT: 13
    MODIFY: 14
    REMOVE: 2
    NEW: 1
  evidence_classes:
    phylogenetic: 2
    electronic: 9
    experimental: 15
    similarity: 3
    author/curator: 1
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 24
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AGO1
  id: O04379
  gene_symbol: AGO1
  status: COMPLETE
  n_annotations: 47
  n_pending: 0
  actions:
    MODIFY: 3
    ACCEPT: 24
    KEEP_AS_NON_CORE: 12
    REMOVE: 6
    NEW: 2
  evidence_classes:
    electronic: 5
    experimental: 39
    similarity: 1
    author/curator: 2
  n_core_functions: 3
  n_proposed_new_terms: 0
  n_references: 36
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AHK2
  id: Q9C5U2
  gene_symbol: AHK2
  status: null
  n_annotations: 69
  n_pending: 0
  actions:
    ACCEPT: 12
    REMOVE: 17
    MODIFY: 3
    KEEP_AS_NON_CORE: 35
    MARK_AS_OVER_ANNOTATED: 1
    NEW: 1
  evidence_classes:
    phylogenetic: 5
    electronic: 19
    experimental: 41
    similarity: 2
    author/curator: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 24
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AHK3
  id: Q9C5U1
  gene_symbol: AHK3
  status: null
  n_annotations: 65
  n_pending: 0
  actions:
    ACCEPT: 13
    REMOVE: 7
    MODIFY: 4
    MARK_AS_OVER_ANNOTATED: 3
    KEEP_AS_NON_CORE: 37
    NEW: 1
  evidence_classes:
    phylogenetic: 5
    electronic: 20
    experimental: 35
    similarity: 2
    author/curator: 3
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 26
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AHK4
  id: Q9C5U0
  gene_symbol: AHK4
  status: null
  n_annotations: 61
  n_pending: 0
  actions:
    ACCEPT: 17
    KEEP_AS_NON_CORE: 25
    REMOVE: 10
    MODIFY: 3
    MARK_AS_OVER_ANNOTATED: 6
  evidence_classes:
    phylogenetic: 5
    electronic: 17
    experimental: 33
    similarity: 3
    author/curator: 3
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 31
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AHP1
  id: Q9ZNV9
  gene_symbol: AHP1
  status: null
  n_annotations: 44
  n_pending: 0
  actions:
    ACCEPT: 26
    REMOVE: 11
    MODIFY: 4
    KEEP_AS_NON_CORE: 2
    MARK_AS_OVER_ANNOTATED: 1
  evidence_classes:
    phylogenetic: 6
    electronic: 7
    experimental: 29
    author/curator: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 19
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AOP2
  id: Q945B5
  gene_symbol: AOP2
  status: COMPLETE
  n_annotations: 4
  n_pending: 0
  actions:
    ACCEPT: 4
  evidence_classes:
    experimental: 2
    electronic: 2
  n_core_functions: 1
  n_proposed_new_terms: 1
  n_references: 6
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AP1
  id: P35631
  gene_symbol: AP1
  status: COMPLETE
  n_annotations: 31
  n_pending: 0
  actions:
    ACCEPT: 11
    MODIFY: 14
    KEEP_AS_NON_CORE: 1
    REMOVE: 5
  evidence_classes:
    phylogenetic: 2
    electronic: 8
    experimental: 18
    similarity: 3
  n_core_functions: 1
  n_proposed_new_terms: 1
  n_references: 26
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AP2
  id: P47927
  gene_symbol: AP2
  status: COMPLETE
  n_annotations: 23
  n_pending: 0
  actions:
    KEEP_AS_NON_CORE: 2
    ACCEPT: 18
    MODIFY: 3
  evidence_classes:
    phylogenetic: 2
    electronic: 5
    experimental: 8
    similarity: 3
    author/curator: 5
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 18
  has_deep_research: true
  has_notes: false
  has_bioinformatics: false
  prediction_reviews: []
- folder: AP3
  id: P35632
  gene_symbol: AP3
  status: INITIALIZED
  n_annotations: 15
  n_pending: 0
  actions:
    ACCEPT: 10
    KEEP_AS_NON_CORE: 5
  evidence_classes:
    phylogenetic: 2
    electronic: 8
    similarity: 3
    experimental: 2
  n_core_functions: 3
  n_proposed_new_terms: 0
  n_references: 10
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: APO1
  id: Q9XIR4
  gene_symbol: APO1
  status: COMPLETE
  n_annotations: 11
  n_pending: 0
  actions:
    ACCEPT: 7
    REMOVE: 2
    KEEP_AS_NON_CORE: 1
    MARK_AS_OVER_ANNOTATED: 1
  evidence_classes:
    phylogenetic: 1
    electronic: 3
    experimental: 7
  n_core_functions: 2
  n_proposed_new_terms: 1
  n_references: 9
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ARF19
  id: Q8RYC8
  gene_symbol: ARF19
  status: COMPLETE
  n_annotations: 83
  n_pending: 0
  actions:
    ACCEPT: 23
    KEEP_AS_NON_CORE: 4
    MODIFY: 55
    REMOVE: 1
  evidence_classes:
    phylogenetic: 7
    electronic: 5
    experimental: 68
    similarity: 2
    author/curator: 1
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 27
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ARF5
  id: P93024
  gene_symbol: ARF5
  status: DRAFT
  n_annotations: 33
  n_pending: 0
  actions:
    MODIFY: 1
    ACCEPT: 15
    MARK_AS_OVER_ANNOTATED: 1
    REMOVE: 7
    KEEP_AS_NON_CORE: 7
    NEW: 2
  evidence_classes:
    electronic: 4
    experimental: 24
    similarity: 4
    author/curator: 1
  n_core_functions: 3
  n_proposed_new_terms: 1
  n_references: 20
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ARF7
  id: P93022
  gene_symbol: ARF7
  status: COMPLETE
  n_annotations: 52
  n_pending: 0
  actions:
    ACCEPT: 18
    MODIFY: 20
    KEEP_AS_NON_CORE: 11
    MARK_AS_OVER_ANNOTATED: 1
    NEW: 2
  evidence_classes:
    phylogenetic: 7
    experimental: 36
    electronic: 4
    similarity: 2
    author/curator: 3
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 26
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ARR1
  id: Q940D0
  gene_symbol: ARR1
  status: null
  n_annotations: 48
  n_pending: 0
  actions:
    ACCEPT: 21
    MODIFY: 2
    REMOVE: 8
    MARK_AS_OVER_ANNOTATED: 1
    KEEP_AS_NON_CORE: 15
    NEW: 1
  evidence_classes:
    similarity: 4
    electronic: 5
    experimental: 33
    phylogenetic: 5
    author/curator: 1
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 23
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ARR12
  id: P62598
  gene_symbol: ARR12
  status: null
  n_annotations: 45
  n_pending: 0
  actions:
    ACCEPT: 17
    MODIFY: 4
    REMOVE: 1
    KEEP_AS_NON_CORE: 21
    MARK_AS_OVER_ANNOTATED: 1
    NEW: 1
  evidence_classes:
    similarity: 3
    electronic: 15
    experimental: 20
    phylogenetic: 6
    author/curator: 1
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 17
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ARR5
  id: Q9SB04
  gene_symbol: ARR5
  status: null
  n_annotations: 28
  n_pending: 0
  actions:
    ACCEPT: 15
    REMOVE: 6
    MARK_AS_OVER_ANNOTATED: 4
    KEEP_AS_NON_CORE: 2
    NEW: 1
  evidence_classes:
    experimental: 14
    similarity: 2
    electronic: 4
    phylogenetic: 6
    author/curator: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 16
  has_deep_research: false
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT1G06680
  id: Q42029
  gene_symbol: PSBP1
  status: COMPLETE
  n_annotations: 34
  n_pending: 0
  actions:
    ACCEPT: 22
    REMOVE: 1
    MARK_AS_OVER_ANNOTATED: 5
    KEEP_AS_NON_CORE: 6
  evidence_classes:
    phylogenetic: 2
    electronic: 7
    experimental: 22
    similarity: 1
    author/curator: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 28
  has_deep_research: true
  has_notes: false
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT1G32330
  id: Q9LQM7
  gene_symbol: HSFA1D
  status: COMPLETE
  n_annotations: 14
  n_pending: 0
  actions:
    ACCEPT: 12
    MODIFY: 2
  evidence_classes:
    phylogenetic: 4
    electronic: 6
    similarity: 2
    experimental: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 12
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT1G74310
  id: P42730
  gene_symbol: CLPB1
  status: COMPLETE
  n_annotations: 23
  n_pending: 0
  actions:
    ACCEPT: 13
    MODIFY: 3
    KEEP_AS_NON_CORE: 3
    REMOVE: 2
    NEW: 2
  evidence_classes:
    phylogenetic: 3
    electronic: 6
    experimental: 11
    similarity: 1
    author/curator: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 22
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT2G26150
  id: O80982
  gene_symbol: HSFA2
  status: COMPLETE
  n_annotations: 42
  n_pending: 0
  actions:
    ACCEPT: 27
    KEEP_AS_NON_CORE: 14
    NEW: 1
  evidence_classes:
    phylogenetic: 4
    electronic: 6
    experimental: 30
    similarity: 2
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 25
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT3G02990
  id: Q9SCW5
  gene_symbol: HSFA1E
  status: COMPLETE
  n_annotations: 13
  n_pending: 0
  actions:
    ACCEPT: 12
    KEEP_AS_NON_CORE: 1
  evidence_classes:
    phylogenetic: 4
    electronic: 6
    similarity: 2
    experimental: 1
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 11
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT4G17750
  id: P41151
  gene_symbol: AT4G17750
  status: INITIALIZED
  n_annotations: 22
  n_pending: 0
  actions:
    ACCEPT: 22
  evidence_classes:
    phylogenetic: 4
    electronic: 6
    experimental: 10
    similarity: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 18
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT4G38370
  id: Q0WW53
  gene_symbol: AT4G38370
  status: COMPLETE
  n_annotations: 0
  n_pending: 0
  actions: {}
  evidence_classes: {}
  n_core_functions: 0
  n_proposed_new_terms: 0
  n_references: 4
  has_deep_research: true
  has_notes: true
  has_bioinformatics: true
  prediction_reviews:
  - AT4G38370-protnlm-predictions-review.yaml
- folder: AT5G02500
  id: P22953
  gene_symbol: HSP70-1
  status: COMPLETE
  n_annotations: 48
  n_pending: 0
  actions:
    ACCEPT: 26
    MODIFY: 2
    KEEP_AS_NON_CORE: 12
    MARK_AS_OVER_ANNOTATED: 5
    REMOVE: 3
  evidence_classes:
    phylogenetic: 5
    electronic: 7
    experimental: 31
    similarity: 3
    author/curator: 2
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 34
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT5G03720
  id: Q8GYY1
  gene_symbol: AT5G03720
  status: IN_PROGRESS
  n_annotations: 16
  n_pending: 0
  actions:
    ACCEPT: 12
    MODIFY: 3
    NEW: 1
  evidence_classes:
    phylogenetic: 4
    electronic: 5
    experimental: 5
    similarity: 2
  n_core_functions: 2
  n_proposed_new_terms: 0
  n_references: 9
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT5G16820
  id: O81821
  gene_symbol: AT5G16820
  status: INITIALIZED
  n_annotations: 21
  n_pending: 0
  actions:
    ACCEPT: 17
    KEEP_AS_NON_CORE: 1
    MODIFY: 2
    NEW: 1
  evidence_classes:
    phylogenetic: 4
    electronic: 6
    similarity: 2
    experimental: 8
    author/curator: 1
  n_core_functions: 4
  n_proposed_new_terms: 0
  n_references: 15
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AT5G52640
  id: P27323
  gene_symbol: AT5G52640
  status: INITIALIZED
  n_annotations: 35
  n_pending: 0
  actions:
    ACCEPT: 24
    MODIFY: 2
    REMOVE: 4
    UNDECIDED: 2
    KEEP_AS_NON_CORE: 1
    NEW: 2
  evidence_classes:
    phylogenetic: 10
    electronic: 10
    experimental: 14
    similarity: 1
  n_core_functions: 4
  n_proposed_new_terms: 0
  n_references: 23
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: AUX1
  id: Q96247
  gene_symbol: AUX1
  status: DRAFT
  n_annotations: 23
  n_pending: 0
  actions:
    MARK_AS_OVER_ANNOTATED: 3
    ACCEPT: 8
    REMOVE: 1
    KEEP_AS_NON_CORE: 9
    MODIFY: 1
    NEW: 1
  evidence_classes:
    electronic: 4
    experimental: 16
    similarity: 2
    author/curator: 1
  n_core_functions: 2
  n_proposed_new_terms: 1
  n_references: 19
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
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  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ZDS
  id: Q38893
  gene_symbol: ZDS
  status: COMPLETE
  n_annotations: 16
  n_pending: 0
  actions:
    ACCEPT: 15
    MODIFY: 1
  evidence_classes:
    experimental: 8
    electronic: 5
    similarity: 1
    phylogenetic: 2
  n_core_functions: 1
  n_proposed_new_terms: 0
  n_references: 12
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []
- folder: ZTL
  id: Q94BT6
  gene_symbol: ZTL
  status: COMPLETE
  n_annotations: 46
  n_pending: 0
  actions:
    REMOVE: 2
    MODIFY: 16
    KEEP_AS_NON_CORE: 8
    ACCEPT: 20
  evidence_classes:
    experimental: 27
    phylogenetic: 6
    electronic: 7
    similarity: 1
    author/curator: 5
  n_core_functions: 3
  n_proposed_new_terms: 0
  n_references: 23
  has_deep_research: true
  has_notes: true
  has_bioinformatics: false
  prediction_reviews: []