source: projects/CACAO/data/cacao-quickgo-2026-10-28.tsv
adjacent_locus:
  description: Numerically-named gene products carrying CACAO rows. A paper writing 'gp5' can land on
    the entry named '5.4'; the T4 gp5.4 review found all four of its rows misattributed this way.
  numeric_symbol_gene_products: 71
  unreviewed:
  - accession: P03680
    symbol: '2'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 3
    reviewed: false
  - accession: P17312
    symbol: '17'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 3
    reviewed: false
  - accession: P26747
    symbol: '5'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 3
    reviewed: false
  - accession: P49861
    symbol: '5'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 3
    reviewed: false
  - accession: Q01074
    symbol: '7'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 3
    reviewed: false
  - accession: O48449
    symbol: '17.1'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: O64258
    symbol: '66'
    taxon: NCBITaxon:28369
    organism: Mycobacterium phage D29
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P00971
    symbol: '63'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P11187
    symbol: '15'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P13849
    symbol: '8'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P26744
    symbol: '1'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P26746
    symbol: '4'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P26749
    symbol: '10'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P28960
    symbol: '11'
    taxon: NCBITaxon:31520
    organism: Equine herpesvirus 1 (strain Ab4p)
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P49860
    symbol: '4'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: P54309
    symbol: '6'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: Q01076
    symbol: '20'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
  - accession: B3VMP4
    symbol: '8.5'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: B6V2P4
    symbol: '9.1'
    taxon: NCBITaxon:2884427
    organism: Bacillus phage SP01
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: O04998
    symbol: '11427840'
    taxon: NCBITaxon:3880
    organism: Medicago truncatula
    group: Viridiplantae
    cacao_rows: 1
    reviewed: false
  - accession: O48470
    symbol: '24.1'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: O48471
    symbol: '25'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: O48472
    symbol: '26'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: O64204
    symbol: '11'
    taxon: NCBITaxon:28369
    organism: Mycobacterium phage D29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: O64205
    symbol: '12'
    taxon: NCBITaxon:28369
    organism: Mycobacterium phage D29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: O64238
    symbol: '48'
    taxon: NCBITaxon:28369
    organism: Mycobacterium phage D29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: O64257
    symbol: '65'
    taxon: NCBITaxon:28369
    organism: Mycobacterium phage D29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P00970
    symbol: '30'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P03679
    symbol: '1'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P03682
    symbol: '4'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P03686
    symbol: '17'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P04332
    symbol: '10'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P04415
    symbol: '43'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P04520
    symbol: '61'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P07659
    symbol: '1'
    taxon: NCBITaxon:10759
    organism: Enterobacteria phage T3
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P07876
    symbol: '38'
    taxon: NCBITaxon:10674
    organism: Enterobacteria phage K3
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P11188
    symbol: '14'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P12528
    symbol: '9'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P13340
    symbol: '49'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P15132
    symbol: '13'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P17313
    symbol: '31'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P22884
    symbol: '33'
    taxon: NCBITaxon:31757
    organism: Mycobacterium phage L5
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P23992
    symbol: '60'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P35837
    symbol: '26'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: P49859
    symbol: '3'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q01146
    symbol: '16'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q05262
    symbol: '50'
    taxon: NCBITaxon:31757
    organism: Mycobacterium phage L5
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q38442
    symbol: '7'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q38504
    symbol: '5'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q7Y2C1
    symbol: '44'
    taxon: NCBITaxon:204270
    organism: Pseudomonas phage phiKMV
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q9FZT2
    symbol: '2'
    taxon: NCBITaxon:134554
    organism: Pseudomonas phage phi13
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q9MC15
    symbol: '2'
    taxon: NCBITaxon:120086
    organism: Pseudomonas phage phi8
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q9MCN1
    symbol: '74'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: Q9MCS4
    symbol: '15'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 1
    reviewed: false
  - accession: S5YPI0
    symbol: '110'
    taxon: NCBITaxon:1382932
    organism: Bacillus phage Troll
    group: Viruses
    cacao_rows: 1
    reviewed: false
  shared_pmid_with_another_numeric_gene:
  - accession: Q01074
    symbol: '7'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 3
    reviewed: false
    note: PMID:37952769 shared with ['P12528', 'P26744', 'P26746', 'P26749', 'P35837', 'Q01076']; PMID:38236051
      shared with ['Q01076', 'Q01146']
  - accession: P03680
    symbol: '2'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 3
    reviewed: false
    note: PMID:6402761 shared with ['P03681']; PMID:820555 shared with ['P03679', 'P03681', 'P03682',
      'P03685', 'P03686', 'P11187']
  - accession: P49861
    symbol: '5'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 3
    reviewed: false
    note: PMID:7723020 shared with ['P49859', 'P49860']
  - accession: P26749
    symbol: '10'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:37952769 shared with ['P12528', 'P26744', 'P26746', 'P35837', 'Q01074', 'Q01076']
  - accession: P26744
    symbol: '1'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:37952769 shared with ['P12528', 'P26746', 'P26749', 'P35837', 'Q01074', 'Q01076']
  - accession: P26746
    symbol: '4'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:37952769 shared with ['P12528', 'P26744', 'P26749', 'P35837', 'Q01074', 'Q01076']
  - accession: Q01076
    symbol: '20'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:37952769 shared with ['P12528', 'P26744', 'P26746', 'P26749', 'P35837', 'Q01074']; PMID:38236051
      shared with ['Q01074', 'Q01146']
  - accession: P11187
    symbol: '15'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:820555 shared with ['P03679', 'P03680', 'P03681', 'P03682', 'P03685', 'P03686']
  - accession: P49860
    symbol: '4'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:7723020 shared with ['P49859', 'P49861']
  - accession: P54309
    symbol: '6'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:14763972 shared with ['O48471', 'Q38442']
  - accession: P13849
    symbol: '8'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 2
    reviewed: false
    note: PMID:22225806 shared with ['B3VMP4', 'P04332']
  - accession: P12528
    symbol: '9'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:37952769 shared with ['P26744', 'P26746', 'P26749', 'P35837', 'Q01074', 'Q01076']
  - accession: P35837
    symbol: '26'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:37952769 shared with ['P12528', 'P26744', 'P26746', 'P26749', 'Q01074', 'Q01076']
  - accession: O48470
    symbol: '24.1'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:27825035 shared with ['O48472']
  - accession: O48472
    symbol: '26'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:27825035 shared with ['O48470']
  - accession: Q38504
    symbol: '5'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:4630506 shared with ['P03681']
  - accession: P03686
    symbol: '17'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:820555 shared with ['P03679', 'P03680', 'P03681', 'P03682', 'P03685', 'P11187']
  - accession: P03679
    symbol: '1'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:820555 shared with ['P03680', 'P03681', 'P03682', 'P03685', 'P03686', 'P11187']
  - accession: P03682
    symbol: '4'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:820555 shared with ['P03679', 'P03680', 'P03681', 'P03685', 'P03686', 'P11187']
  - accession: Q01146
    symbol: '16'
    taxon: NCBITaxon:10754
    organism: Salmonella phage P22
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:38236051 shared with ['Q01074', 'Q01076']
  - accession: P49859
    symbol: '3'
    taxon: NCBITaxon:2681617
    organism: Enterobacteria phage HK97
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:7723020 shared with ['P49860', 'P49861']
  - accession: O48471
    symbol: '25'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:14763972 shared with ['P54309', 'Q38442']
  - accession: Q38442
    symbol: '7'
    taxon: NCBITaxon:10724
    organism: Bacillus phage SPP1
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:14763972 shared with ['O48471', 'P54309']
  - accession: P04332
    symbol: '10'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:22225806 shared with ['B3VMP4', 'P13849']
  - accession: B3VMP4
    symbol: '8.5'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 1
    reviewed: false
    note: PMID:22225806 shared with ['P04332', 'P13849']
  - accession: P03685
    symbol: '6'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 5
    reviewed: true
    note: PMID:820555 shared with ['P03679', 'P03680', 'P03681', 'P03682', 'P03686', 'P11187']
  - accession: P03681
    symbol: '3'
    taxon: NCBITaxon:2884424
    organism: Bacillus phage phi29
    group: Viruses
    cacao_rows: 4
    reviewed: true
    note: PMID:4630506 shared with ['Q38504']; PMID:6402761 shared with ['P03680']; PMID:820555 shared
      with ['P03679', 'P03680', 'P03682', 'P03685', 'P03686', 'P11187']
  - accession: P03724
    symbol: '14'
    taxon: NCBITaxon:10760
    organism: Escherichia phage T7
    group: Viruses
    cacao_rows: 1
    reviewed: true
    note: PMID:34214465 shared with ['P03725', 'P03726']
  - accession: P03726
    symbol: '16'
    taxon: NCBITaxon:10760
    organism: Escherichia phage T7
    group: Viruses
    cacao_rows: 1
    reviewed: true
    note: PMID:34214465 shared with ['P03724', 'P03725']
  - accession: P03725
    symbol: '15'
    taxon: NCBITaxon:10760
    organism: Escherichia phage T7
    group: Viruses
    cacao_rows: 1
    reviewed: true
    note: PMID:34214465 shared with ['P03724', 'P03726']
  - accession: P13332
    symbol: '18'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: true
    note: PMID:15315755 shared with ['P10927', 'P10929']
  - accession: P10929
    symbol: '11'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: true
    note: PMID:15315755 shared with ['P10927', 'P13332']
  - accession: P10927
    symbol: '9'
    taxon: NCBITaxon:10665
    organism: Enterobacteria phage T4
    group: Viruses
    cacao_rows: 1
    reviewed: true
    note: PMID:15315755 shared with ['P10929', 'P13332']
cross_isolate:
  description: 'A single PMID cited by CACAO rows on gene products from more than one taxon. The Gag review
    found four rows giving this isolate experimental codes for prototype-foamy-virus experiments, where
    ISS is the right code. Taxon count alone is a poor screen: the widest reference here spans 25 taxa
    and is a comparative study that legitimately annotates each. The candidate set is therefore references
    spanning 2-4 taxa whose organism names look like isolates of one species group; each still needs the
    paper read, since a paper may genuinely assay two of them.'
  references_spanning_taxa: 95
  likely_isolate_transfer:
  - reference: PMID:8158642
    taxa:
    - NCBITaxon:1061
    - NCBITaxon:272942
    organisms:
    - Rhodobacter capsulatus
    - Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
    groups:
    - Bacteria
    gene_products:
    - P26165
    - P26168
    - P26169
    - P26236
    any_reviewed: false
  - reference: PMID:19651856
    taxa:
    - NCBITaxon:235443
    - NCBITaxon:552467
    organisms:
    - Cryptococcus gattii
    - Cryptococcus neoformans (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487)
    groups:
    - Fungi
    gene_products:
    - B3FTL1
    - B3FTL2
    - Q059G6
    any_reviewed: false
  - reference: PMID:15020762
    taxa:
    - NCBITaxon:10580
    - NCBITaxon:333760
    - NCBITaxon:333761
    organisms:
    - Human papillomavirus 11
    - Human papillomavirus type 16
    - Human papillomavirus type 18
    groups:
    - Viruses
    gene_products:
    - D7GMV3
    - P03120
    - P06790
    any_reviewed: false
  - reference: PMID:16216585
    taxa:
    - NCBITaxon:10884
    - NCBITaxon:10886
    organisms:
    - Reovirus type 1 (strain Lang)
    - Reovirus type 3 (strain Dearing)
    groups:
    - Viruses
    gene_products:
    - P04506
    - P11077
    - P11079
    any_reviewed: false
  - reference: PMID:25049409
    taxa:
    - NCBITaxon:208964
    - NCBITaxon:2907964
    organisms:
    - Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C
      / PRS 101 / PAO1)
    - Pseudomonas phage D3112
    groups:
    - Bacteria
    - Viruses
    gene_products:
    - P04739
    - P22608
    - Q6TM97
    any_reviewed: false
  - reference: PMID:20174553
    taxa:
    - NCBITaxon:214684
    - NCBITaxon:40410
    organisms:
    - Cryptococcus deneoformans
    - Cryptococcus deneoformans (strain JEC21 / ATCC MYA-565)
    groups:
    - Fungi
    gene_products:
    - P0CM46
    - P0CS62
    - Q9HFW0
    any_reviewed: false
  - reference: PMID:11359579
    taxa:
    - NCBITaxon:246197
    - NCBITaxon:34
    organisms:
    - Myxococcus xanthus
    - Myxococcus xanthus (strain DK1622)
    groups:
    - Bacteria
    gene_products:
    - Q1D7F8
    - Q93P57
    - Q93P59
    any_reviewed: false
  - reference: PMID:25344242
    taxa:
    - NCBITaxon:1445810
    - NCBITaxon:1445811
    organisms:
    - Bacillus phage Bp8p-C
    - Bacillus phage Bp8p-T
    groups:
    - Viruses
    gene_products:
    - A0A0A0PJ25
    - A0A0A0PKY3
    any_reviewed: false
  - reference: PMID:24736222
    taxa:
    - NCBITaxon:2907964
    - NCBITaxon:2913973
    organisms:
    - Pseudomonas phage D3112
    - Pseudomonas phage DMS3
    groups:
    - Viruses
    gene_products:
    - A0SMP0
    - Q6TM71
    any_reviewed: false
  - reference: PMID:24955762
    taxa:
    - NCBITaxon:262723
    - NCBITaxon:347257
    organisms:
    - Mycoplasmopsis agalactiae (strain NCTC 10123 / CIP 59.7 / PG2)
    - Mycoplasmopsis synoviae (strain 53)
    groups:
    - Bacteria
    gene_products:
    - A5IZ80
    - Q4A724
    any_reviewed: false
  - reference: PMID:22361861
    taxa:
    - NCBITaxon:1598
    - NCBITaxon:557436
    organisms:
    - Limosilactobacillus reuteri
    - Limosilactobacillus reuteri (strain DSM 20016)
    groups:
    - Bacteria
    gene_products:
    - A5VL73
    - Q5SBN1
    any_reviewed: false
  - reference: PMID:17557882
    taxa:
    - NCBITaxon:284813
    - NCBITaxon:58839
    organisms:
    - Encephalitozoon cuniculi (strain GB-M1)
    - Encephalitozoon intestinalis
    groups:
    - Fungi
    gene_products:
    - A7TZU4
    - Q8SWL3
    any_reviewed: false
  - reference: PMID:10347192
    taxa:
    - NCBITaxon:1061
    - NCBITaxon:272942
    organisms:
    - Rhodobacter capsulatus
    - Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
    groups:
    - Bacteria
    gene_products:
    - D5AQX9
    - Q9L906
    any_reviewed: false
  - reference: PMID:21513512
    taxa:
    - NCBITaxon:319795
    - NCBITaxon:68910
    organisms:
    - Deinococcus geothermalis (strain DSM 11300 / CIP 105573 / AG-3a)
    - Deinococcus murrayi
    groups:
    - Bacteria
    gene_products:
    - E7CG23
    - Q1IWF2
    any_reviewed: false
  - reference: PMID:24166757
    taxa:
    - NCBITaxon:1915
    - NCBITaxon:36816
    organisms:
    - Streptomyces caelestis
    - Streptomyces lincolnensis
    groups:
    - Bacteria
    gene_products:
    - E9JES0
    - Q54363
    any_reviewed: false
  - reference: PMID:16484190
    taxa:
    - NCBITaxon:316401
    - NCBITaxon:562
    organisms:
    - Escherichia coli
    - Escherichia coli O78:H11 (strain H10407 / ETEC)
    groups:
    - Bacteria
    gene_products:
    - F8SKF2
    - Q9S4K6
    any_reviewed: false
  - reference: PMID:10559333
    taxa:
    - NCBITaxon:1453080
    - NCBITaxon:291604
    organisms:
    - Faba bean necrotic yellows C1 alphasatellite
    - Faba bean necrotic yellows virus (isolate Syrian SV292-88)
    groups:
    - Viruses
    gene_products:
    - O39828
    - Q66862
    any_reviewed: false
  - reference: PMID:18248423
    taxa:
    - NCBITaxon:28369
    - NCBITaxon:31757
    organisms:
    - Mycobacterium phage D29
    - Mycobacterium phage L5
    groups:
    - Viruses
    gene_products:
    - O64238
    - Q05262
    any_reviewed: false
  - reference: PMID:23152924
    taxa:
    - NCBITaxon:312309
    - NCBITaxon:668
    organisms:
    - Aliivibrio fischeri
    - Aliivibrio fischeri (strain ATCC 700601 / ES114)
    groups:
    - Bacteria
    gene_products:
    - P12747
    - Q5E7U3
    any_reviewed: false
  - reference: PMID:25448817
    taxa:
    - NCBITaxon:367830
    - NCBITaxon:93061
    organisms:
    - Staphylococcus aureus (strain NCTC 8325 / PS 47)
    - Staphylococcus aureus (strain USA300)
    groups:
    - Bacteria
    gene_products:
    - Q2FID4
    - Q2G0W2
    any_reviewed: false
  - reference: PMID:15882424
    taxa:
    - NCBITaxon:1311
    - NCBITaxon:205921
    organisms:
    - Streptococcus agalactiae
    - Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700)
    groups:
    - Bacteria
    gene_products:
    - Q3JZ68
    - Q8VQA0
    any_reviewed: false
  - reference: PMID:26586803
    taxa:
    - NCBITaxon:1223260
    - NCBITaxon:208963
    organisms:
    - Pseudomonas aeruginosa (strain UCBPP-PA14)
    - Pseudomonas phage JBD30
    groups:
    - Bacteria
    - Viruses
    gene_products:
    - L7P7M1
    - Q02ML7
    - Q02ML8
    - Q02MM1
    - Q02MM2
    any_reviewed: true
  - reference: PMID:11602748
    taxa:
    - NCBITaxon:120086
    - NCBITaxon:134554
    - NCBITaxon:2928686
    organisms:
    - Pseudomonas phage phi13
    - Pseudomonas phage phi6
    - Pseudomonas phage phi8
    groups:
    - Viruses
    gene_products:
    - P11124
    - Q9FZT2
    - Q9MC15
    any_reviewed: true
  - reference: PMID:30463036
    taxa:
    - NCBITaxon:2681611
    - NCBITaxon:83333
    organisms:
    - Escherichia coli (strain K12)
    - Escherichia phage lambda
    groups:
    - Bacteria
    - Viruses
    gene_products:
    - P03764
    - P06996
    any_reviewed: true
  wide_comparative_studies_not_candidates:
  - reference: PMID:23493556
    taxa: 25
    organisms_sample:
    - Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
    - Candida albicans (strain SC5314 / ATCC MYA-2876)
    - Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
  - reference: PMID:24980702
    taxa: 16
    organisms_sample:
    - Agrobacterium fabrum (strain C58 / ATCC 33970)
    - Bacillus thuringiensis subsp. konkukian (strain 97-27)
    - Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819
      / NCTC 12168 / Alc 37)
  - reference: PMID:23968233
    taxa: 9
    organisms_sample:
    - Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 /
      NRRL B-4536 / VPI 7372)
    - Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC
      2599 / NRRL B-3711)
    - Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB
      9131 / NCTC 9757 / MK)
odd_qualifier:
  description: CACAO rows whose qualifier is not involved_in, enables, part_of or located_in. AcrIIA5's
    2025 row used acts_upstream_of_or_within_positive_effect for a process the protein executes directly,
    while the same group's earlier rows used involved_in.
  qualifier_counts:
    acts_upstream_of_or_within_positive_effect: 58
    acts_upstream_of_negative_effect: 1
    acts_upstream_of_or_within_negative_effect: 1
    NOT|enables: 1
    acts_upstream_of_or_within: 1
    acts_upstream_of_positive_effect: 1
  rows:
  - accession: Q8I3W6
    symbol: PF3D7_0514100
    organism: Plasmodium falciparum (isolate 3D7)
    group: Other eukaryote
    term: GO:0043139
    evidence: IDA
    reference: PMID:23185322
    qualifier: NOT|enables
    reviewed: false
  - accession: Q9S752
    symbol: LOG2
    organism: Arabidopsis thaliana
    group: Viridiplantae
    term: GO:0090333
    evidence: IMP
    reference: PMID:23696092
    qualifier: acts_upstream_of_or_within
    reviewed: false
  - accession: A0A6B1YCA6
    symbol: GUL26_19840
    organism: Pseudomonas aeruginosa
    group: Bacteria
    term: GO:0098672
    evidence: IDA
    reference: PMID:27573108
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: A0SMN5
    symbol: DMS3-25
    organism: Pseudomonas phage DMS3
    group: Viruses
    term: GO:0051607
    evidence: IMP
    reference: PMID:41639445
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: A0SMN5
    symbol: DMS3-25
    organism: Pseudomonas phage DMS3
    group: Viruses
    term: GO:0051607
    evidence: IMP
    reference: PMID:41639445
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: A0SMP0
    symbol: DMS3-30
    organism: Pseudomonas phage DMS3
    group: Viruses
    term: GO:0098672
    evidence: IDA
    reference: PMID:24736222
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: A5FI22
    symbol: Fjoh_2111
    organism: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202
      / NBRC 14942 / NCIMB 11054 / UW101)
    group: Bacteria
    term: GO:0042953
    evidence: ''
    reference: PMID:40050408
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: A5FKZ5
    symbol: Fjoh_1085
    organism: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202
      / NBRC 14942 / NCIMB 11054 / UW101)
    group: Bacteria
    term: GO:0042953
    evidence: ''
    reference: PMID:40050408
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: A5FMD5
    symbol: Fjoh_0605
    organism: Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / JCM 8514 / BCRC 14874 / CCUG 350202
      / NBRC 14942 / NCIMB 11054 / UW101)
    group: Bacteria
    term: GO:0042953
    evidence: ''
    reference: PMID:40050408
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: B3FK34
    symbol: 201phi2-1p059
    organism: Pseudomonas phage 201phi2-1
    group: Viruses
    term: GO:1903902
    evidence: IMP
    reference: PMID:22726436
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: B3G1L5
    symbol: PACL_0680
    organism: Pseudomonas aeruginosa
    group: Bacteria
    term: GO:0098672
    evidence: IDA
    reference: PMID:27573108
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: I6P9Q0
    symbol: GH15_072
    organism: Staphylococcus phage G15
    group: Viruses
    term: GO:0044659
    evidence: IDA
    reference: PMID:26873847
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: L7P7M1
    symbol: JBD30_035
    organism: Pseudomonas phage JBD30
    group: Viruses
    term: GO:0098672
    evidence: IMP
    reference: PMID:26586803
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: M1R9I8
    symbol: M1R9I8
    organism: Vibrio cholerae serotype O1 biovar El Tor
    group: Bacteria
    term: GO:0044659
    evidence: IDA
    reference: PMID:32329714
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P03679
    symbol: '1'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0039693
    evidence: IMP
    reference: PMID:820555
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P03680
    symbol: '2'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0006270
    evidence: IMP
    reference: PMID:6402761
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P03680
    symbol: '2'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0006270
    evidence: IMP
    reference: PMID:6402761
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P03680
    symbol: '2'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0039693
    evidence: IMP
    reference: PMID:820555
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P03682
    symbol: '4'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0044659
    evidence: IMP
    reference: PMID:820555
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P03686
    symbol: '17'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0039693
    evidence: IMP
    reference: PMID:820555
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P0DW45
    symbol: kwaA
    organism: Escherichia coli O55:H7 (strain RM12579 / EPEC)
    group: Bacteria
    term: GO:0051607
    evidence: IMP
    reference: PMID:40730155
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P0DW46
    symbol: kwaB
    organism: Escherichia coli O55:H7 (strain RM12579 / EPEC)
    group: Bacteria
    term: GO:0051607
    evidence: IMP
    reference: PMID:40730155
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P0DW57
    symbol: tad1
    organism: Bacillus phage SBSphiJ7
    group: Viruses
    term: GO:0052031
    evidence: IDA
    reference: PMID:39478223
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P0DW58
    symbol: tad1
    organism: Clostridium botulinum
    group: Bacteria
    term: GO:0052031
    evidence: IDA
    reference: PMID:39478223
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P0DW61
    symbol: tad1
    organism: Clostridioides mangenotii (strain LM2)
    group: Bacteria
    term: GO:0052031
    evidence: IDA
    reference: PMID:39478223
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P11187
    symbol: '15'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0044659
    evidence: IMP
    reference: PMID:820555
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P15235
    symbol: P15235
    organism: Enterobacteria phage N4
    group: Viruses
    term: GO:0019084
    evidence: IDA
    reference: PMID:12975320
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P38396
    symbol: sieB
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0035821
    evidence: IMP
    reference: PMID:4610993
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P38396
    symbol: sieB
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0098669
    evidence: IMP
    reference: PMID:4610993
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P49861
    symbol: '5'
    organism: Enterobacteria phage HK97
    group: Viruses
    term: GO:0046797
    evidence: IMP
    reference: PMID:7723020
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: P49861
    symbol: '5'
    organism: Enterobacteria phage HK97
    group: Viruses
    term: GO:0046797
    evidence: IDA
    reference: PMID:7723020
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q01074
    symbol: '7'
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0099002
    evidence: IMP
    reference: PMID:38236051
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q01076
    symbol: '20'
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0099002
    evidence: IMP
    reference: PMID:38236051
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q01146
    symbol: '16'
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0099002
    evidence: IMP
    reference: PMID:38236051
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q38504
    symbol: '5'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0039693
    evidence: IMP
    reference: PMID:4630506
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q48EH2
    symbol: PSPPH_4093
    organism: Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
    group: Bacteria
    term: GO:0039696
    evidence: IDA
    reference: PMID:18836083
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q48EH2
    symbol: PSPPH_4093
    organism: Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
    group: Bacteria
    term: GO:1903902
    evidence: IDA
    reference: PMID:18836083
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q6TM71
    symbol: orf31
    organism: Pseudomonas phage D3112
    group: Viruses
    term: GO:0098672
    evidence: IDA
    reference: PMID:24736222
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q71TC7
    symbol: pmgC
    organism: Escherichia phage P1
    group: Viruses
    term: GO:0098005
    evidence: IMP
    reference: PMID:35458408
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q71TC9
    symbol: pmgB
    organism: Escherichia phage P1
    group: Viruses
    term: GO:0098003
    evidence: IMP
    reference: PMID:35458408
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q71TD1
    symbol: pmgA
    organism: Escherichia phage P1
    group: Viruses
    term: GO:0098003
    evidence: IMP
    reference: PMID:35458408
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q9T1X2
    symbol: lys
    organism: Escherichia phage Mu
    group: Viruses
    term: GO:0044659
    evidence: IMP
    reference: PMID:35471081
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: false
  - accession: Q9T1W9
    symbol: Mup25
    organism: Escherichia phage Mu
    group: Viruses
    term: GO:0140913
    evidence: IDA
    reference: PMID:35471081
    qualifier: acts_upstream_of_positive_effect
    reviewed: false
  - accession: P05460
    symbol: psu
    organism: Enterobacteria phage P4
    group: Viruses
    term: GO:0050434
    evidence: IMP
    reference: PMID:39788982
    qualifier: acts_upstream_of_negative_effect
    reviewed: true
  - accession: Q38674
    symbol: sieA
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0046596
    evidence: IMP
    reference: PMID:4610992
    qualifier: acts_upstream_of_or_within_negative_effect
    reviewed: true
  - accession: A0A220GHA5
    symbol: D4276_028
    organism: Streptococcus phage D4276
    group: Viruses
    term: GO:0098672
    evidence: IDA
    reference: PMID:28785032
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: A0A220GHA5
    symbol: D4276_028
    organism: Streptococcus phage D4276
    group: Viruses
    term: GO:0098672
    evidence: IDA
    reference: PMID:28785032
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: A0A247D711
    symbol: acrIIA4
    organism: Listeria monocytogenes
    group: Bacteria
    term: GO:0098672
    evidence: IDA
    reference: PMID:28041849
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: A0A2D0TCG3
    symbol: A0A2D0TCG3
    organism: Neisseria meningitidis
    group: Bacteria
    term: GO:0098672
    evidence: IDA
    reference: PMID:27984730
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: A0A425B3G2
    symbol: CIJ84_02100
    organism: Neisseria meningitidis
    group: Bacteria
    term: GO:0098672
    evidence: IDA
    reference: PMID:27984730
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: P03681
    symbol: '3'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0006270
    evidence: IMP
    reference: PMID:6402761
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: P03681
    symbol: '3'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0006270
    evidence: IDA
    reference: PMID:6813861
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: P03681
    symbol: '3'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0039693
    evidence: IMP
    reference: PMID:4630506
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: P03681
    symbol: '3'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0039693
    evidence: IMP
    reference: PMID:820555
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: P03685
    symbol: '6'
    organism: Bacillus phage phi29
    group: Viruses
    term: GO:0039693
    evidence: IMP
    reference: PMID:820555
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: P03749
    symbol: J
    organism: Escherichia phage lambda
    group: Viruses
    term: GO:0019062
    evidence: IDA
    reference: PMID:41237242
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: Q02ML8
    symbol: cas3
    organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
    group: Bacteria
    term: GO:0043571
    evidence: IMP
    reference: PMID:26586803
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: Q02ML8
    symbol: cas3
    organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
    group: Bacteria
    term: GO:0043571
    evidence: IMP
    reference: PMID:26586803
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: Q02MM1
    symbol: csy3
    organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
    group: Bacteria
    term: GO:0043571
    evidence: IMP
    reference: PMID:26586803
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: Q02MM2
    symbol: cas6f
    organism: Pseudomonas aeruginosa (strain UCBPP-PA14)
    group: Bacteria
    term: GO:0043571
    evidence: IMP
    reference: PMID:26586803
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: Q38674
    symbol: sieA
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0098669
    evidence: IDA
    reference: PMID:38236051
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: Q38674
    symbol: sieA
    organism: Salmonella phage P22
    group: Viruses
    term: GO:0098669
    evidence: IMP
    reference: PMID:4610992
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true
  - accession: Q99YM9
    symbol: pppL
    organism: Streptococcus pyogenes serotype M1
    group: Bacteria
    term: GO:0062085
    evidence: IMP
    reference: PMID:16487973
    qualifier: acts_upstream_of_or_within_positive_effect
    reviewed: true