{
  "snapshot_date_utc": "2026-09-26",
  "status": "Campaign total: 14 merged completions. This queue tracks 18 latest published revisions (8 merged PRs) with 71 verified file hashes; the first six campaign completions predate this queue.",
  "instructions": [
    "Keep one dedicated PR per gene. These manifests do not authorize bypassing session restrictions.",
    "Recheck remote heads and existing shared caches before publishing; do not overwrite conflicting changes.",
    "Fetch the listed missing publications normally, then rerun targeted validation and rendering and refresh affected hashes.",
    "Project tracking and this queue belong to the project PR, not gene PRs.",
    "Receipts identify the exact published tree whose hashes are recorded; later PR heads may supersede it until the next tracking snapshot."
  ],
  "genes": [
    {
      "gene": "ABCB4",
      "pr": 3135,
      "branch": "cmungall/clingen-abcb4",
      "expected_remote_head": "5fa6ee26208562402e4295703a80ea7cf569b0e2",
      "kind": "followup",
      "validation": "Gene, history, render and source-preservation checks pass",
      "pending_cached_publications": [],
      "files": [
        {
          "path": "genes/human/ABCB4/ABCB4-ai-review.yaml",
          "sha256": "727768df7d29d5a9d589d38dc8654db766bd326d3d7810dd67abfd3407c0b8fa"
        },
        {
          "path": "genes/human/ABCB4/ABCB4-ai-review.html",
          "sha256": "d5b57f12dbc8dfb41b59a7faa7d9ada380d337b181148221de53a90700c0c68d"
        },
        {
          "path": "genes/human/ABCB4/ABCB4-notes.md",
          "sha256": "b68558b4ced24e2e963d4f3abf83217aba649c8de31e7de3643aee7ea426da41"
        },
        {
          "path": "history/genes/human/ABCB4/2026-09-26T221136Z-codex-923d28.yaml",
          "sha256": "655accd2afcc2d6f235c8cbfac37988021f1d2cce708fcfc62f42be05f0a7f66"
        }
      ],
      "publication_status": "merged; final-head approval and required CI passed",
      "publication_receipt": {
        "commit": "85a037efcedc539102539973d26fbd2ae328133f",
        "local_commit": "70031e390ecdaef373f98a5d3e607c5fff480c35",
        "tree": "c8ad92de459cadfe62366b2ab4e786aebbe10b09",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/85a037efcedc539102539973d26fbd2ae328133f"
      },
      "publication_history": [
        {
          "commit": "5fa6ee26208562402e4295703a80ea7cf569b0e2",
          "local_commit": "9f49994f07294e8d6470bee4ce2f9084025e9d78",
          "tree": "17a00453e6935b36656a0a8d62efacecad7e4d1b",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/5fa6ee26208562402e4295703a80ea7cf569b0e2",
          "expected_remote_head": "edcb85f5030d5a0e8d8d4b08554297f615a6ce8f",
          "files": [
            {
              "path": "genes/human/ABCB4/ABCB4-ai-review.html",
              "sha256": "5e7d85a7013697137d8d922264493ec9cbecfb514619bf01b8720dcea6241864"
            },
            {
              "path": "genes/human/ABCB4/ABCB4-ai-review.yaml",
              "sha256": "853fa761c1e74cd4e60f971f2900600d7f00d95b1dc7210fd466ea7f34271b22"
            },
            {
              "path": "genes/human/ABCB4/ABCB4-notes.md",
              "sha256": "15a36bbae1df2458227995e9c84a29147e3743d9199eb7684643617ee77135fe"
            },
            {
              "path": "history/genes/human/ABCB4/2026-09-26T030751Z-codex-750ac2.yaml",
              "sha256": "c1f639365c2d1941912c83371143e845fb6e3630ee565c6eda8ef887f9e25124"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "merge_receipt": {
        "commit": "323dfca4144fa9cd18b5a9161aff7c4eb0b44273",
        "merged_at": "2026-09-26T22:41:04Z"
      }
    },
    {
      "gene": "ABCC6",
      "pr": 3138,
      "branch": "cmungall/clingen-abcc6",
      "expected_remote_head": "a04de35ec83a59fbb382487af6299d2d868d0151",
      "kind": "followup",
      "validation": {
        "gene": "PASS; one intentional unused Falcon report advisory",
        "new_history": "PASS",
        "render": "PASS; revised text present",
        "source_assertions": "All 69 tuples unchanged",
        "references": "All reference records unchanged",
        "propagation": "23 blocks retained",
        "whitespace": "No trailing whitespace in changed text files",
        "cache_integrity": "All cached publications, Reactome, GOA, UniProt and provider artifacts byte-identical to source head"
      },
      "pending_cached_publications": [],
      "files": [
        {
          "path": "genes/human/ABCC6/ABCC6-ai-review.html",
          "sha256": "e78038c2a837f8b7b8b5e8005ecce362776fecc2b567d703d9ae6cac5a535570"
        },
        {
          "path": "genes/human/ABCC6/ABCC6-ai-review.yaml",
          "sha256": "f1fcbca7f578d398663517f9d2133fdd13c80883c17d2bc9cb1dc1e2be0cfcbb"
        },
        {
          "path": "genes/human/ABCC6/ABCC6-notes.md",
          "sha256": "8a1a391a7bfc0691ffd889ac9ace5f69fb0f964cbf8fb1b14761b805d71ae6c7"
        },
        {
          "path": "history/genes/human/ABCC6/2026-09-26T033121Z-codex-58c7fe.yaml",
          "sha256": "8888b8b37d836760d490ace93505215c8f9585fc71afe3e5c6f95cdf1fd0df97"
        }
      ],
      "publication_status": "merged; final approval and required CI passed",
      "publication_receipt": {
        "commit": "681dc1cf8acc6a0487294b8841b0479b617e5fac",
        "local_commit": "f170ac121344e60e0771aa09f54a70970fdf30f8",
        "tree": "2dfb3bd7b799941d568cabb9ebb0b84e78ee5eed",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/681dc1cf8acc6a0487294b8841b0479b617e5fac"
      },
      "merge_receipt": {
        "commit": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
        "merged_at": "2026-09-26T21:22:34Z"
      }
    },
    {
      "gene": "ABCC8",
      "pr": 3136,
      "branch": "cmungall/clingen-abcc8",
      "expected_remote_head": "b447c4a440645a04b452ece19f7f578d6504d5a3",
      "kind": "followup",
      "validation": "Targeted history validation, rendering and source-preservation checks passed",
      "pending_cached_publications": [
        "PMID:16924481"
      ],
      "files": [
        {
          "path": "genes/human/ABCC8/ABCC8-notes.md",
          "sha256": "3a4286a806b849ef5751746712c9eb22946083592c30486986897bd96fc29ec8"
        },
        {
          "path": "genes/human/ABCC8/ABCC8-ai-review.html",
          "sha256": "509846ef52d1aa1c0353ed0df6f801def4251e575d43e6cde13caa8fffbee3aa"
        },
        {
          "path": "history/genes/human/ABCC8/2026-09-26T232040Z-codex-87b4db.yaml",
          "sha256": "f127b235a5dc3e466361f00332477fd2d5cf9a65807e703658748029ff811a89"
        }
      ],
      "publication_status": "Draft; current head approved; PMID:16924481 cache required",
      "publication_receipt": {
        "commit": "2eab82c52195f54938aab5cad676f2e37b1d127a",
        "local_commit": "d7b6aa68ea986e47f979472b0f746f1798146b4b",
        "tree": "4f9a25a9704b3327057ae8d9d5203dd1cab38bf0",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/2eab82c52195f54938aab5cad676f2e37b1d127a"
      },
      "publication_history": [
        {
          "commit": "b447c4a440645a04b452ece19f7f578d6504d5a3",
          "local_commit": "3900326a5d942f8849fae4783ce6b5e9c21564cb",
          "tree": "07f87ae66a22b42fa98dacd593b5565e1263dc35",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/b447c4a440645a04b452ece19f7f578d6504d5a3",
          "expected_remote_head": "31c9d66b174aef7cfc15e710376d40efbb3dc4e5",
          "files": [
            {
              "path": "genes/human/ABCC8/ABCC8-ai-review.html",
              "sha256": "603cddb0f5ed479ed5cec4e2f0106fb9285b38a7331b8288d65fcf5d91739122"
            },
            {
              "path": "genes/human/ABCC8/ABCC8-ai-review.yaml",
              "sha256": "ba290b26220f05cb0f7dc389dba884e8e003d9550f73657820ae844d59419430"
            },
            {
              "path": "genes/human/ABCC8/ABCC8-notes.md",
              "sha256": "52cc2609740f8f6af45df956280bea82312b4a327e1af7659a38fa72754d7740"
            },
            {
              "path": "history/genes/human/ABCC8/2026-09-26T230754Z-claude-code-b5d4b5.yaml",
              "sha256": "efb052eda336b01c0ecd4098564a38c40da7e38baa215164bc54e70b7b168702"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        },
        {
          "commit": "31c9d66b174aef7cfc15e710376d40efbb3dc4e5",
          "local_commit": "7f3bf7393cc124976943ab0512a39622c43423d1",
          "tree": "d41c8688d57431e4ad091e45ee61b0c023483f37",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/31c9d66b174aef7cfc15e710376d40efbb3dc4e5",
          "expected_remote_head": "1bf52d95a381d852b6a2a1dc5b44c2bceaefd329",
          "files": [
            {
              "path": "genes/human/ABCC8/ABCC8-ai-review.html",
              "sha256": "664fb19b2ea8fe29d8a5c9320868044818b784ab3bbd8b1826b94311d0188fd2"
            },
            {
              "path": "genes/human/ABCC8/ABCC8-ai-review.yaml",
              "sha256": "fd08cd8be7bccf0133ddebd38dc1f9560ea7e4b46cba53d7af07c2d867b35a52"
            },
            {
              "path": "genes/human/ABCC8/ABCC8-notes.md",
              "sha256": "2e56db6fbe79ab3b9f7bb001e21d9920bb7a56bf50b2231ea4490095f8786341"
            },
            {
              "path": "history/genes/human/ABCC8/2026-09-26T224656Z-codex-fae44e.yaml",
              "sha256": "6cd4a5dee4914f140204972f85f385a51652058e0c3dc7ba5c074eb2c1e65feb"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        },
        {
          "commit": "1bf52d95a381d852b6a2a1dc5b44c2bceaefd329",
          "local_commit": "9a4c32d9fb7c2d2c4ce167cabd15a2b488792be4",
          "tree": "bc9e07c98e8bf76a08b16cfcfdefc7f374926606",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/1bf52d95a381d852b6a2a1dc5b44c2bceaefd329",
          "expected_remote_head": "793d135911fc163565db257aa55f75d2acc23156",
          "files": [
            {
              "path": "genes/human/ABCC8/ABCC8-ai-review.html",
              "sha256": "b6ac3c1d00f9a11fc885cae7a47ea9991a13225bf12baa953c9846eb99341a64"
            },
            {
              "path": "genes/human/ABCC8/ABCC8-ai-review.yaml",
              "sha256": "784d43cb16d2f9d4d2de481745ec770e1d52025fd9cd56aa764edda3057dd10b"
            },
            {
              "path": "genes/human/ABCC8/ABCC8-notes.md",
              "sha256": "3591afba20b6860c978e999d61a913e6e53eacdb9778ca238b49854135a52639"
            },
            {
              "path": "history/genes/human/ABCC8/2026-09-26T033445Z-codex-316492.yaml",
              "sha256": "50c2457965bd6880ffcceae648da1bad7df9f6744e0166ddd368689ddef21a5b"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ]
    },
    {
      "gene": "ABCC9",
      "pr": 3148,
      "branch": "cmungall/clingen-abcc9",
      "base_commit": "6455f59face473d84f2976a81c54aa47df26f398",
      "kind": "followup",
      "validation": {
        "gene": "PASS; one existing advisory for unused Falcon report in annotation-level quotes",
        "render": "PASS; updated evidence and core text inspected",
        "source_tuple_equality": "PASS; every original field outside review preserved",
        "history": "PASS",
        "append_only_notes": "PASS"
      },
      "pending_cached_publications": [],
      "excluded_existing_conflicts": [
        "publications/PMID_30280653.md"
      ],
      "files": [
        {
          "path": "genes/human/ABCC9/ABCC9-ai-review.yaml",
          "sha256": "d4677e450fe8b1c4bde1fc2fb360c470964cfab7afe64ae16d097bbe9f8ecbd5"
        },
        {
          "path": "genes/human/ABCC9/ABCC9-ai-review.html",
          "sha256": "112c40cafbdc55f49094158ce84aeee97f0ce591eee594c1b0194786fb48ab5e"
        },
        {
          "path": "genes/human/ABCC9/ABCC9-notes.md",
          "sha256": "4ea4dd2beb241c2b9a960e026894ebfbaff847f76f06905bd893951779407fae"
        },
        {
          "path": "history/genes/human/ABCC9/2026-09-26T222047Z-codex-0a5f13.yaml",
          "sha256": "6bb48e86343e72a2597833165770ee97e81718957f3ddeb33acf157b2626f81b"
        }
      ],
      "publication_status": "merged; final-head approval and required CI passed",
      "publication_receipt": {
        "commit": "875d13534aba5a86032ac242b7fc20c5aa11e561",
        "local_commit": "7f68f8ceb8d228b005186b42c261ff61aefee7cc",
        "tree": "39ff598cc42d42908ce6b89e61b8b75da69af294",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/875d13534aba5a86032ac242b7fc20c5aa11e561"
      },
      "publication_history": [
        {
          "commit": "dd674e49837004266dafbafccd62b0b98a2c7a98",
          "local_commit": "9a68e1217df3a13823bdb09360c350547bae7fa2",
          "tree": "5a4c3483cb6d8e250da50961a50aec4304731cb0",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/dd674e49837004266dafbafccd62b0b98a2c7a98",
          "expected_remote_head": "6455f59face473d84f2976a81c54aa47df26f398",
          "files": [
            {
              "path": "genes/human/ABCC9/ABCC9-ai-review.html",
              "sha256": "3418d4e462bbf3fffc39c0c56672a9db3b33bd9a74d08338ba086bcc3004c8c9"
            },
            {
              "path": "genes/human/ABCC9/ABCC9-ai-review.yaml",
              "sha256": "2283074f075e2a608992a0cab42ad3f1caead5dfcc0ee1b6e8b687535fe50ea6"
            },
            {
              "path": "genes/human/ABCC9/ABCC9-deep-research-falcon.md",
              "sha256": "ae7c524eaffd0b6f481219f7b5bdbae16f1595eb8663ddab5312ece97c4224fd"
            },
            {
              "path": "genes/human/ABCC9/ABCC9-deep-research-falcon_artifacts/artifact-00.md",
              "sha256": "23ca33cde84bb03d6838b73c957ca2eccb35b4c7a9b4727213aa924371f0a356"
            },
            {
              "path": "genes/human/ABCC9/ABCC9-deep-research-falcon_artifacts/image-1.png",
              "sha256": "7cbdcc308665832198c7dcb9e6520b19f6b16db7bc67b49891bceb1526004cad"
            },
            {
              "path": "genes/human/ABCC9/ABCC9-goa.tsv",
              "sha256": "6eb45e375f4072106f24b240688ba6936697170f83c758dbe6e5d77488fc60a4"
            },
            {
              "path": "genes/human/ABCC9/ABCC9-notes.md",
              "sha256": "5d58c3e181447ae5315b9a6a99cc2e55910a539711e149134197d2853953ce1a"
            },
            {
              "path": "genes/human/ABCC9/ABCC9-uniprot.txt",
              "sha256": "13d0aecb29ff1fa06a7f32a38d387d49728aaebb2cad4a8d4eb525ac3dfd2e35"
            },
            {
              "path": "history/genes/human/ABCC9/2026-09-26T032958Z-codex-40e6c6.yaml",
              "sha256": "40de483ab0f281267d33e080d99bfc59879706672c66b2de4c4e2f7b90e93e4d"
            },
            {
              "path": "publications/PMID_11934987.md",
              "sha256": "cb46e5bb7021ab1e62fc1d02fab3c1df074d8a280b9ee7c4c52089f21280d3e8"
            },
            {
              "path": "publications/PMID_15034580.md",
              "sha256": "1cbfe740f4cea1541ab83c4e68787311edc0ecbaa939fe870c60f28d6f9e23fb"
            },
            {
              "path": "publications/PMID_16085792.md",
              "sha256": "e2ca6b4a2a43e8bfd87c3250d66296b4ce35d79e084bed18aeb22b313013c552"
            },
            {
              "path": "publications/PMID_18001767.md",
              "sha256": "065d4a8ff7faf4b503da288f1b35ec819315bb65000ed32c459d027bd21fb045"
            },
            {
              "path": "publications/PMID_18026101.md",
              "sha256": "f53fff1bf12ad75a7ae4cc5841a87d36b912cf390d9d7ae5a01336836f4763d8"
            },
            {
              "path": "publications/PMID_18434629.md",
              "sha256": "0f51b635573b28d2a2d0893b12c56caac99ae56a08889d001fe2afd650592d6b"
            },
            {
              "path": "publications/PMID_19797704.md",
              "sha256": "62d7ca1c1133bb152bdae7d18c6525af36c944f7a27128735e236424f10265c2"
            },
            {
              "path": "publications/PMID_20610380.md",
              "sha256": "aec2232c28301577fa4cabd69b4bf0059f689d3d1a9c0a2e6193c428e60da700"
            },
            {
              "path": "publications/PMID_20935152.md",
              "sha256": "2f080e380923911ed392571e73ce7901c4d451c9c9c15e764f53841201e8db9a"
            },
            {
              "path": "publications/PMID_22610116.md",
              "sha256": "51bf024be27bd86999d678be3335d864d92ab79b0c570362014259906d19cf26"
            },
            {
              "path": "publications/PMID_24439875.md",
              "sha256": "44cf11c75acba9421a233f7e38425fddc214d9670084759a6908218d299322e0"
            },
            {
              "path": "publications/PMID_24648545.md",
              "sha256": "8ed1be83bfd0a0b89e0a5b398e2f2cdf576d94f943fcd3e886a1485fef07c1de"
            },
            {
              "path": "publications/PMID_26181369.md",
              "sha256": "a80f8fd70b5d67cd435a07381ff6c971d0654e409b5fc2b62a689c1611ee893f"
            },
            {
              "path": "publications/PMID_26621776.md",
              "sha256": "2e62bc9dd2a117e7d440982952955d7e950a3c10d3bda9518140872afe7d18bf"
            },
            {
              "path": "publications/PMID_28842488.md",
              "sha256": "1a304d86aa8c5af04a331918950d03f51293d791101556f069757713c6fe6be6"
            },
            {
              "path": "publications/PMID_31575858.md",
              "sha256": "fc42f872f6535150e99655f1e8457c1af3e695067467a602c32124a1e2fc08ee"
            },
            {
              "path": "publications/PMID_34711681.md",
              "sha256": "87e03311f6ee296dec83620c4e936c0a3459c4c70f9ca64d58ce4a399718bc68"
            },
            {
              "path": "publications/PMID_35562524.md",
              "sha256": "cce7086f540ecd47bff2ff9b8e1c8792540ab9ea8c382872dc762bf486ad1ff7"
            },
            {
              "path": "publications/PMID_37330603.md",
              "sha256": "4174c6a1723cfba037c5ee7accb365397d02af61b4a8fa731dbdfccca422426e"
            },
            {
              "path": "publications/PMID_8630239.md",
              "sha256": "5ae5ae046ae95ec46db6b4b605d2db8dad57db86293167d94367eac25cc53042"
            },
            {
              "path": "publications/PMID_9831708.md",
              "sha256": "3744a60b108088d95c8927dbe842e883a70c9168e3c1ffc6e94f785634af16c8"
            },
            {
              "path": "reactome/R-HSA-1369017.md",
              "sha256": "314dfc538cb2d85c77ec663133ba69281efe7fd5c6c525d2ed26e2990f91c7be"
            },
            {
              "path": "reactome/R-HSA-5678261.md",
              "sha256": "3a700bd709d00c27ddf6f9e3babfd1f227d9957bcef31911008884bb069dd140"
            },
            {
              "path": "reactome/R-HSA-5678418.md",
              "sha256": "d05d004d56bcb75f683509a19f73d044a6e87fc06b85ebda19f86b6f67c15d92"
            },
            {
              "path": "reactome/R-HSA-9691566.md",
              "sha256": "af4db9c22c149fbd40c4ac4625036f2ce680e54320716956c2b7a8b013267cf4"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "dd674e49837004266dafbafccd62b0b98a2c7a98",
      "merge_receipt": {
        "commit": "ef291d796fd8ca62db39b3549293d06e61c1004e",
        "merged_at": "2026-09-26T22:49:06Z"
      }
    },
    {
      "gene": "ABCD1",
      "pr": 3150,
      "branch": "cmungall/clingen-abcd1",
      "kind": "followup",
      "validation": {
        "gene": "PASS with three warnings",
        "history": "PASS",
        "render": "PASS",
        "source_rows": "135/135 unchanged outside review",
        "whitespace": "No trailing YAML spaces; cleanup parsed-equal",
        "warnings": [
          "Required PMID16213491 cache absent",
          "GO0005324 source-specific UNDECIDED vs MODIFY",
          "GO0005829 source-participant NON_CORE vs MODIFY"
        ]
      },
      "pending_cached_publications": [
        "PMID:16213491"
      ],
      "files": [
        {
          "path": "genes/human/ABCD1/ABCD1-ai-review.yaml",
          "sha256": "8f6633cf79993e4fbd20649b35812192f0b95bf53a13d05c35d2174deb08d389"
        },
        {
          "path": "genes/human/ABCD1/ABCD1-notes.md",
          "sha256": "ade385be47cc8496a1d3cd04334b0bb60eef48f5d31dd8c33b4d5bf88c5b856d"
        },
        {
          "path": "genes/human/ABCD1/ABCD1-ai-review.html",
          "sha256": "ca271c974ba3026cfcaf08a8f9e2a75a24dcea43f96dd76e702a03e46ace3a13"
        },
        {
          "path": "history/genes/human/ABCD1/2026-09-26T225206Z-codex-14ada9.yaml",
          "sha256": "af87bfe2771dbf32701ec3775859c26473afa867b8f57572ff53fa630e569b0a"
        }
      ],
      "publication_status": "Draft; biological feedback resolved; PMID:16213491 cache required",
      "publication_receipt": {
        "commit": "c92b5fa7c6c563f00c7a67d1fb7c24815426df88",
        "local_commit": "96ec51ea421f2cab6f884266e3f9ab4a8c31dc21",
        "tree": "f06126245a4ccaa1bbdf8b63a1e7dad720a419cf",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/c92b5fa7c6c563f00c7a67d1fb7c24815426df88"
      },
      "base_commit": "6455f59face473d84f2976a81c54aa47df26f398",
      "publication_history": [
        {
          "commit": "8090c5a86ab995ecdcc191e17e71f723853ede17",
          "local_commit": "94cbef6e097c4e79ba8f35d93575aa7265e5e34d",
          "tree": "83ea5f3fb98b685e2141306a98d2df73b8b6aee9",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/8090c5a86ab995ecdcc191e17e71f723853ede17",
          "expected_remote_head": "6455f59face473d84f2976a81c54aa47df26f398",
          "files": [
            {
              "path": "genes/human/ABCD1/ABCD1-ai-review.html",
              "sha256": "2acd8e5ad9c255b8bbdd37a8d4e5b71ed300fed7bd0b54e002d09477ae9823c8"
            },
            {
              "path": "genes/human/ABCD1/ABCD1-ai-review.yaml",
              "sha256": "4f5aa3f23e42534d72a29e5564425c590c9d8897f6efa70b2a0c7d9c8fd93e5a"
            },
            {
              "path": "genes/human/ABCD1/ABCD1-deep-research-falcon.md",
              "sha256": "fe289d2a403f05f2d473dca92a1f9a2ecebe22e8ceb2566c3cb91af0ef1348b4"
            },
            {
              "path": "genes/human/ABCD1/ABCD1-deep-research-falcon_artifacts/artifact-00.md",
              "sha256": "4f520c118c8a1dbe9f12aa004830e77a646d2ec064478a94e36fbe632799d9f3"
            },
            {
              "path": "genes/human/ABCD1/ABCD1-goa.tsv",
              "sha256": "e02d701d551ed22ba3c7818d3c5e454ba11a1b33ae00ce9fbbc67c2bb2bd4f98"
            },
            {
              "path": "genes/human/ABCD1/ABCD1-notes.md",
              "sha256": "5903f59f893c279a610cebb9e9266bcf15a5e5c70fbfd34f6c59c7734e428950"
            },
            {
              "path": "genes/human/ABCD1/ABCD1-uniprot.txt",
              "sha256": "09b0536130040cbcdd5f2985b81987b79d02736cbd32c3c87f5ea9c98f35329e"
            },
            {
              "path": "history/genes/human/ABCD1/2026-09-26T033612Z-codex-3d1cb2.yaml",
              "sha256": "881e4fe6bb63a16d1e6f497df6e4e1478093e66a97f832cd56abe7643be1afbe"
            },
            {
              "path": "publications/PMID_10640429.md",
              "sha256": "b8630804a7b9d53376082aec889835d3c03cf3de5bc467b194012f7b96a0b5bb"
            },
            {
              "path": "publications/PMID_11500517.md",
              "sha256": "9cf9c8760d8101e8d2d70bba95ac48fde634bad558a44951626248d514251216"
            },
            {
              "path": "publications/PMID_11875044.md",
              "sha256": "46d0f4954f4a1cd9a580be3490e799adb1557e68d76efa9b273c84afd4898a3f"
            },
            {
              "path": "publications/PMID_15489218.md",
              "sha256": "0e9500acbc90a0e810d5299aef38ceb92a1ab1101d91a93877220d98a146e87b"
            },
            {
              "path": "publications/PMID_15682271.md",
              "sha256": "2fccc00aa914ee8fd73c0cf6da8fd8435de21a6966e7dcf355d2a2ca4bb4c41d"
            },
            {
              "path": "publications/PMID_16223892.md",
              "sha256": "e58081e623880b8d9dc11b555c2405db1aaa1824b31270c8d3b83d88765fc947"
            },
            {
              "path": "publications/PMID_16946495.md",
              "sha256": "f085c4c350545b8268ab17ef0f782abbb0438a65dda6446deeb81351a32d19d2"
            },
            {
              "path": "publications/PMID_17761426.md",
              "sha256": "9340d26931f70f9e58acf9e9e343e0361017649db438a77ccfd076dbd2ee1417"
            },
            {
              "path": "publications/PMID_18344354.md",
              "sha256": "39aceef4410c46ba9a6fa8b9255d0299136c2249d301d4e274586266d07be17e"
            },
            {
              "path": "publications/PMID_18723473.md",
              "sha256": "fb37e64854fdfcc543e62f66b6c537f8533701c2bd73889be23267f8c8f08d74"
            },
            {
              "path": "publications/PMID_18757502.md",
              "sha256": "061739dbcf8ad27b34489d6fbb28ce2f00707357dcd9717da950df1c565373ad"
            },
            {
              "path": "publications/PMID_18854420.md",
              "sha256": "9520d4d7292d2e98c16c7dd2e80711cb6f774f589b4ed8c4981319e71ee4c1ad"
            },
            {
              "path": "publications/PMID_21145416.md",
              "sha256": "09440703e5ea345ef769e8e1b53628f4ae3046b2241c485dbb21441e86ede24d"
            },
            {
              "path": "publications/PMID_22521832.md",
              "sha256": "602a23da455f1611a295b6feb7bbe2596e039f042481a2575831edc3c532cda3"
            },
            {
              "path": "publications/PMID_23123468.md",
              "sha256": "327c6cf9d47e3bbdab8f9ee4237757aeb4ff24012b0b982871c33353e1efcf7c"
            },
            {
              "path": "publications/PMID_23604518.md",
              "sha256": "381a56fce97c186db2ee16c944803dbb6489e6fcde567f3ed24252bef291c089"
            },
            {
              "path": "publications/PMID_23671276.md",
              "sha256": "06c81a2536495c367a70b3e23ebf56346ee1b96b70396d23d3deffb7179267e6"
            },
            {
              "path": "publications/PMID_25255441.md",
              "sha256": "671f11e7639a6828cc7bdcfad447b39f2a58d93c2a6a74606e71b8f738d2dd38"
            },
            {
              "path": "publications/PMID_25583114.md",
              "sha256": "f2d1c370452f394bb7a7d26e63d30b1de480102088ca047d0c9ba2432a308f5e"
            },
            {
              "path": "publications/PMID_26108493.md",
              "sha256": "686c6235960c417ac57c93a5ecbf38fd1b533df3da0c0bdafa642723b12d70cd"
            },
            {
              "path": "publications/PMID_33500543.md",
              "sha256": "9f21a849ced710f5e12c1cb5dce777f957726ebf35320ce330535363639f83b5"
            },
            {
              "path": "publications/PMID_35013584.md",
              "sha256": "ffea08007fc30839bdbec9e575ea481edcba6f74bc7252a2a14f82c9bec5a4d3"
            },
            {
              "path": "publications/PMID_35676282.md",
              "sha256": "2a630af1bdccc961aa85d6222f5b32e904ff33f9649494212619aff120a507aa"
            },
            {
              "path": "publications/PMID_8441467.md",
              "sha256": "831941c4b7fe21a2faf8d4b0777a4d6bb199eb7e6e1031634165caf3cad4f4c5"
            },
            {
              "path": "reactome/R-HSA-2046087.md",
              "sha256": "734c314f9200284b0a39cbb5f482f9042c03440066bc9758adbb25cb78296e11"
            },
            {
              "path": "reactome/R-HSA-2046093.md",
              "sha256": "460d6a2e486cdf5eb570838d1ef9fd71aab365777731139b3419c8cdf0842cdd"
            },
            {
              "path": "reactome/R-HSA-390393.md",
              "sha256": "f4ec21bd0204398f8c574d3d45ffd675153af9cc38c9c0028b5ca08b1128af09"
            },
            {
              "path": "reactome/R-HSA-5684043.md",
              "sha256": "34448200dc10fe67704808b8559fb37d4c531b0e808f04eabd7b32ecf3bd4b0f"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "8090c5a86ab995ecdcc191e17e71f723853ede17"
    },
    {
      "gene": "ACAD8",
      "pr": 3151,
      "branch": "cmungall/clingen-acad8",
      "base_commit": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
      "kind": "existing_review_audit",
      "validation": "Gene/history/render/source-preservation pass; 23 source assertions unchanged",
      "pending_cached_publications": [],
      "files": [
        {
          "path": "genes/human/ACAD8/ACAD8-ai-review.yaml",
          "sha256": "f687f340f1dc62be0a6a328a180f523c7880e609c7deade4821c8b0e4174310e"
        },
        {
          "path": "genes/human/ACAD8/ACAD8-notes.md",
          "sha256": "90095486de6f49914bfc2b26b6d44e0f8954cbf68099ec41dec32b7f1ac45493"
        },
        {
          "path": "genes/human/ACAD8/ACAD8-ai-review.html",
          "sha256": "383ce7a4937440566ca7895b1547dc660c7e88eb806922a869741f3277ac889a"
        },
        {
          "path": "history/genes/human/ACAD8/2026-09-26T215843Z-codex-cd9ef9.yaml",
          "sha256": "8105053a568fd7050409f36f814d92b5d0c113496c97cc6cbd49ada8da1db4f3"
        }
      ],
      "publication_status": "merged; final-head approval and required CI passed",
      "publication_receipt": {
        "commit": "acd39fb8cbb021bbee3841ca977b247b8ac3f802",
        "local_commit": "a7ef5899be073210cbc6085c03a287c1c1f39a1c",
        "tree": "815154eedb8fb3b6dfb3e913a270b9bac3494c66",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/acd39fb8cbb021bbee3841ca977b247b8ac3f802"
      },
      "publication_history": [
        {
          "commit": "08e671f8e76810dfb8d7327d115287021b9c403c",
          "local_commit": "69826f1c075ae6b799daaf1cd7f8d9aa215fef0e",
          "tree": "773dbcffe7d0e80f526fe9dd06d8fe7ca0a371dc",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/08e671f8e76810dfb8d7327d115287021b9c403c",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACAD8/ACAD8-ai-review.html",
              "sha256": "97c5fa2718ba49b322663dc90f6316e64d9b0885c35ffd33da717e30bdd9cd7e"
            },
            {
              "path": "genes/human/ACAD8/ACAD8-ai-review.yaml",
              "sha256": "584afda1b7f292f8e07f796aa6672ff9bfe527e621b62d40b2838e2ee213d2f4"
            },
            {
              "path": "genes/human/ACAD8/ACAD8-notes.md",
              "sha256": "9021882504dc5f5aa191d9c7430666167b38336ee76d725cb6a527cdd54961a4"
            },
            {
              "path": "history/genes/human/ACAD8/2026-09-26T212947Z-codex-a1f8bd.yaml",
              "sha256": "5f5cdf24b86bf0bcb792be82a24742791baab550d63bd69753667346e792a9b3"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "08e671f8e76810dfb8d7327d115287021b9c403c",
      "merge_receipt": {
        "commit": "9e34ed516aaa199a283a5042f6adf3b60ae45d54",
        "merged_at": "2026-09-26T22:20:09Z"
      }
    },
    {
      "gene": "ACAD9",
      "pr": 3152,
      "branch": "cmungall/clingen-acad9",
      "base_commit": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
      "kind": "existing_review_audit",
      "validation": {
        "gene": "PASS; no warnings",
        "render": "PASS; updated content inspected",
        "source_tuple_equality": "PASS",
        "history": "PASS"
      },
      "pending_cached_publications": [],
      "files": [
        {
          "path": "genes/human/ACAD9/ACAD9-ai-review.yaml",
          "sha256": "e806590133dfb2587953f79239bac05658b9bd6b4c52e9d073482b819cad01aa"
        },
        {
          "path": "genes/human/ACAD9/ACAD9-ai-review.html",
          "sha256": "c0ec29e6ae2f434db51e7d545e37992e30c567662b17052b6266771b7e81a140"
        },
        {
          "path": "genes/human/ACAD9/ACAD9-notes.md",
          "sha256": "52c9a7bbff91a45b146903a0e8d76cf980fa46cabb323692c141e4c419ff1230"
        },
        {
          "path": "history/genes/human/ACAD9/2026-09-26T220104Z-codex-97a90f.yaml",
          "sha256": "fbafc85b3f47f4cc225a14936ddd7e3104ff6544af76f6e61b9be0468ae7c6ba"
        }
      ],
      "publication_status": "merged; final-head approval and required CI passed",
      "publication_receipt": {
        "commit": "53b3e3c398f59a40419f7c080954fd71d2de4b2e",
        "local_commit": "2ddce08d6de832e1b0be90d8e40a9184101af5a1",
        "tree": "fd2925dbd75e1af66711f0a66bc5720a4af8f31d",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/53b3e3c398f59a40419f7c080954fd71d2de4b2e"
      },
      "publication_history": [
        {
          "commit": "dcf2389b45b36b9167c0afe5ce9d60b07cd5f344",
          "local_commit": "4e60a7b4957173f6ec0d56b44423c0521928baf4",
          "tree": "bd2c3fab7eafe9f48cd8b66fd93c0f8383cecfe9",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/dcf2389b45b36b9167c0afe5ce9d60b07cd5f344",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACAD9/ACAD9-ai-review.html",
              "sha256": "480a91add662ed8beef30d2c297267c041f45a5d9870d6d77e973c6e0d22f459"
            },
            {
              "path": "genes/human/ACAD9/ACAD9-ai-review.yaml",
              "sha256": "c7966a731b9c24a7b1439ac65c70ef4903295fcdccf8359a334a1325e358a7f0"
            },
            {
              "path": "genes/human/ACAD9/ACAD9-notes.md",
              "sha256": "6e96d70ab39fc0b513fa76b7e8abfa7bf0e98808f7c7081a2e86448352b0fabe"
            },
            {
              "path": "history/genes/human/ACAD9/2026-09-26T213521Z-codex-5edfd5.yaml",
              "sha256": "32abd74fd95bc30169543741f002a9702b2471f731a97eb9dcd014996337c74c"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "dcf2389b45b36b9167c0afe5ce9d60b07cd5f344",
      "merge_receipt": {
        "commit": "e0d565bddebefd72f7c1c32562b588f75a893f69",
        "merged_at": "2026-09-26T22:25:09Z"
      }
    },
    {
      "gene": "ACADM",
      "kind": "followup",
      "base_commit": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
      "pr": 3156,
      "branch": "cmungall/clingen-acadm",
      "validation": "Targeted gene/history/render and source-preservation checks pass",
      "pending_cached_publications": [
        "PMID:18459129"
      ],
      "files": [
        {
          "path": "genes/human/ACADM/ACADM-ai-review.yaml",
          "sha256": "854733b45dcf9d08fa08c34fb7000ecf41c37c2203ae88afe471958dab39cb0a"
        },
        {
          "path": "genes/human/ACADM/ACADM-ai-review.html",
          "sha256": "71911f4bc6b04fe4036db75865bbddec2c7d7c60b3a4cb8f606008303b8e78ef"
        },
        {
          "path": "genes/human/ACADM/ACADM-notes.md",
          "sha256": "bdacce768814ace383157c27cf639f24373d7d7154f602f4845f6ceb86e7f768"
        },
        {
          "path": "history/genes/human/ACADM/2026-09-26T222333Z-codex-6a3d85.yaml",
          "sha256": "cd69ad7b88c5dfd8708efb1692bf5d6840e5c0abf98e4a226412c86bbf2e94b1"
        }
      ],
      "publication_status": "Draft; biological blocker resolved; PMID:18459129 cache required",
      "publication_receipt": {
        "commit": "786055049e98d6df533cb981a2bffedc9b8a8148",
        "local_commit": "6faa6db902073d4248794cad0f3db62549c7dc05",
        "tree": "b84402eaba078807770344b1779d9ed29c0e6733",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/786055049e98d6df533cb981a2bffedc9b8a8148"
      },
      "publication_history": [
        {
          "commit": "c9f797703f1205ab63cfe50094941513cc45715c",
          "local_commit": "93fe780f77a14e3852061573d205a2e90c9253d5",
          "tree": "6b92c056d7d58207ebe457d7861e2c6f641524fa",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/c9f797703f1205ab63cfe50094941513cc45715c",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACADM/ACADM-ai-review.html",
              "sha256": "d68ca370f9421e8e6bf34358c457913ea1aa7be76f1c9434a8b437d254d7e187"
            },
            {
              "path": "genes/human/ACADM/ACADM-ai-review.yaml",
              "sha256": "1f9aa3836334a33d30fd028b9f6237b56899ae194e4103db5fe6053d39db4829"
            },
            {
              "path": "genes/human/ACADM/ACADM-notes.md",
              "sha256": "333e636480e3dff3f770253a180ab71fb64a81d98e0f6e52305566cb7c745fea"
            },
            {
              "path": "history/genes/human/ACADM/2026-09-26T215138Z-codex-3ad00f.yaml",
              "sha256": "904248bf4a87c268688140893fc2b8a1d3aaaa6b12cef590e0f39008b689bcd9"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "c9f797703f1205ab63cfe50094941513cc45715c"
    },
    {
      "gene": "ACADS",
      "kind": "followup",
      "base_commit": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
      "pr": 3155,
      "branch": "cmungall/clingen-acads",
      "validation": "targeted gene/history/render passed; no source changes",
      "pending_cached_publications": [],
      "files": [
        {
          "path": "genes/human/ACADS/ACADS-ai-review.yaml",
          "sha256": "1c2593c9820d2c32a5429dfd534d887275bb07fae6e6e8f35d7b7e69d90cc684"
        },
        {
          "path": "genes/human/ACADS/ACADS-ai-review.html",
          "sha256": "6e83dcada4a309332745d66be3e3e6de392c556b2118f4b2cda4e0b1c5a6d29d"
        },
        {
          "path": "genes/human/ACADS/ACADS-notes.md",
          "sha256": "0d94004d071d87bfbeaf28221eb36ad89ba517b83dec2379cb831a5f98856b61"
        },
        {
          "path": "history/genes/human/ACADS/2026-09-26T222234Z-codex-b8b411.yaml",
          "sha256": "cd9b5fbe5f65de909140bc1236a35d242eae27338d4f358bb2bac2f8478940e8"
        }
      ],
      "publication_status": "merged; final-head approval and required CI passed",
      "publication_receipt": {
        "commit": "bd9113e89759fb9f598a38a4bcfd30d9c7b5af9f",
        "local_commit": "1ae5486a6ab925cf78d0fa95e8b403f5f340f93c",
        "tree": "61d7245d47b3c5b726c381e51b6dd70ee6774736",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/bd9113e89759fb9f598a38a4bcfd30d9c7b5af9f"
      },
      "publication_history": [
        {
          "commit": "85dcaab9ecc6c31d419fd03526d29bbf4d26a150",
          "local_commit": "67d21c6d6c59cc77bb73e9982c20b14d175d356a",
          "tree": "7780f96be3cfaa9d9c2fc1202ebb889818a33a4e",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/85dcaab9ecc6c31d419fd03526d29bbf4d26a150",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACADS/ACADS-ai-review.html",
              "sha256": "7b9e9a6a3a8c6a8d67aa70b1da69c5ccd6a3ac905bcb5fc4614aeed99eefef61"
            },
            {
              "path": "genes/human/ACADS/ACADS-ai-review.yaml",
              "sha256": "9e9003666f88a9f524bfc8286f9cf3379803326dc4b63cbe7eb3177d138e1587"
            },
            {
              "path": "genes/human/ACADS/ACADS-notes.md",
              "sha256": "32a1774ac3c3ec5d8a1476077af78587d69ffae3097e565da1064340291067be"
            },
            {
              "path": "history/genes/human/ACADS/2026-09-26T215831Z-codex-d1d3b3.yaml",
              "sha256": "e45993ed62974a62866e61de63cac892ee0ff20e0a05aa4487351af6cdbb7e48"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "85dcaab9ecc6c31d419fd03526d29bbf4d26a150",
      "merge_receipt": {
        "commit": "245dd1938068b19ab69516815f5ea83778e8a5d2",
        "merged_at": "2026-09-26T22:46:40Z"
      }
    },
    {
      "gene": "ACADSB",
      "kind": "followup",
      "base_commit": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
      "pr": 3154,
      "branch": "cmungall/clingen-acadsb",
      "validation": {
        "gene": "Passed: all validations passed for human/ACADSB",
        "history": "Passed: no issues found",
        "render": "Passed",
        "source_fields": "All 28 source assertion objects and both alternative products unchanged; one integrated core unchanged",
        "whitespace": "Trailing whitespace absent; stripped text checked for parsed YAML equality"
      },
      "pending_cached_publications": [],
      "files": [
        {
          "path": "genes/human/ACADSB/ACADSB-ai-review.yaml",
          "sha256": "9a660422c670848b403e4278288bc3580b1eb9ad1d3356de71e7a60cc030c783"
        },
        {
          "path": "genes/human/ACADSB/ACADSB-notes.md",
          "sha256": "0d1698e343240ef0c856d01379b98faf9a37f6da611afedbd85ae5d17b1d5ade"
        },
        {
          "path": "genes/human/ACADSB/ACADSB-ai-review.html",
          "sha256": "8fac9b547207865b14c06a98ab1042746dd5a087f7404e895bd3623232d5d719"
        },
        {
          "path": "history/genes/human/ACADSB/2026-09-26T222620Z-codex-6e0248.yaml",
          "sha256": "f32768fa2429d5ac9999fc8383b8f88ae8c999bd0516e4a7777c43dc5b45c555"
        }
      ],
      "publication_status": "merged; final-head approval and required CI passed",
      "publication_receipt": {
        "commit": "2e7e77bfbcd435d94878eefa77d9127f1e47031f",
        "local_commit": "ba9f6d0de3b929413638dae42c8feec980d5ea2e",
        "tree": "1a24a28543fc9f013b5b5460b095f6b57fccfa98",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/2e7e77bfbcd435d94878eefa77d9127f1e47031f"
      },
      "publication_history": [
        {
          "commit": "289f06cbb4e4c84ae5a08e8bdb5d0eeb57faa300",
          "local_commit": "bf1c79d648e09b1308a7093feb380096575e5bc7",
          "tree": "19e3111ffa17754f61f50716c28a837de01eca6f",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/289f06cbb4e4c84ae5a08e8bdb5d0eeb57faa300",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACADSB/ACADSB-ai-review.html",
              "sha256": "9c0753281b438ba0f6eeeb6f892e58b01bf9a52212272487a2a0077d35198042"
            },
            {
              "path": "genes/human/ACADSB/ACADSB-ai-review.yaml",
              "sha256": "1f91d28f9a3aff9cf14c9198a55a2e4a50e3452bd926cf23f1767dd127ee73e9"
            },
            {
              "path": "genes/human/ACADSB/ACADSB-notes.md",
              "sha256": "dfa96bc61fcd4ec34d1acf08c33e5b4aea80c6fb9dcb5c42ba3e11fdd300ede5"
            },
            {
              "path": "history/genes/human/ACADSB/2026-09-26T215228Z-codex-a3e98c.yaml",
              "sha256": "705701a47a7ed0b9206f0150bdadaefd660fbbb9e47f1d67164b150d43ea1930"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "289f06cbb4e4c84ae5a08e8bdb5d0eeb57faa300",
      "merge_receipt": {
        "commit": "0efff18e63a816029f64fa64bea40bef0c68c320",
        "merged_at": "2026-09-26T22:57:39Z"
      }
    },
    {
      "gene": "ACADVL",
      "pr": 3157,
      "branch": "cmungall/clingen-acadvl",
      "kind": "followup",
      "expected_remote_head": "a7677e818854bebee0f57e4bd067fe3c6045dca4",
      "files": [
        {
          "path": "genes/human/ACADVL/ACADVL-ai-review.yaml",
          "sha256": "fcb9ac7238c33f399f6fcbb9daa92ed5464504da61b6c68871ddd24ae3e46c6c"
        },
        {
          "path": "genes/human/ACADVL/ACADVL-ai-review.html",
          "sha256": "005e83f603af81ff37adeac2fa1c1536802c1679d161e2f45287b1ac86b392d0"
        },
        {
          "path": "genes/human/ACADVL/ACADVL-notes.md",
          "sha256": "33cb5cda1ebb47b2b95ae8b5fad36263c3684cf35ee609e72a2fd1ef89b2d550"
        },
        {
          "path": "history/genes/human/ACADVL/2026-09-26T230107Z-codex-922567.yaml",
          "sha256": "4c2c930c1219485088f5f265827bc5e01731335863a87384477ee82bb3169b4d"
        }
      ],
      "pending_cached_publications": [],
      "validation": {
        "gene": "Passed without curation warnings",
        "history": "Passed, no issues",
        "render": "Passed",
        "yaml_trailing_whitespace": 0
      },
      "publication_receipt": {
        "commit": "2ed298487e56e79c1b5ab2ee0652b3ca68178f47",
        "local_commit": "b903c02b6c241cb015470b5e07c5927461a2852b",
        "tree": "12904526fee9a7059fa9c91dec600930bae302cb",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/2ed298487e56e79c1b5ab2ee0652b3ca68178f47"
      },
      "publication_status": "Merged; final-head approval and required CI passed",
      "publication_history": [
        {
          "commit": "a7677e818854bebee0f57e4bd067fe3c6045dca4",
          "local_commit": "8738d34fa288ba181891f16c32d565e3c098e2f3",
          "tree": "2ecdab29a92b65b61331fc71a6208804f47bf464",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/a7677e818854bebee0f57e4bd067fe3c6045dca4",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACADVL/ACADVL-ai-review.html",
              "sha256": "e2cad9960fc98da52aae466ff296a96138419509d31e3fb5e676361c88328a58"
            },
            {
              "path": "genes/human/ACADVL/ACADVL-ai-review.yaml",
              "sha256": "571fe4957872f8c4fb3a9ee736bf4dee736740a5d0a9c152af294e765e582c0e"
            },
            {
              "path": "genes/human/ACADVL/ACADVL-notes.md",
              "sha256": "35d79b382d04040764292c8d82b8a6645b76a2ae1bd9e652a3ec0391c247e73f"
            },
            {
              "path": "history/genes/human/ACADVL/2026-09-26T221727Z-codex-f1ab9e.yaml",
              "sha256": "01b011147857e5e75a7d9058b0eb3e13dc079e666b412a8d81967f16c2e8461c"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "merge_receipt": {
        "commit": "af7a6ea1c9a6dd7ceecc8b04b120577d1a4070cb",
        "merged_at": "2026-09-26T23:27:27Z"
      }
    },
    {
      "gene": "ACAN",
      "pr": 3153,
      "branch": "cmungall/clingen-acan",
      "base_commit": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
      "kind": "followup",
      "validation": "Gene/history/render passed. Warnings: required PMID11222505 cache missing; intentional source-resolution split for GO0005576; unused provider. Keep draft.",
      "pending_cached_publications": [
        "PMID:11222505"
      ],
      "files": [
        {
          "path": "genes/human/ACAN/ACAN-ai-review.yaml",
          "sha256": "760f9b89c2780163570d4492e843b6a934ccae959fa813d491e523861a0fe9f7"
        },
        {
          "path": "genes/human/ACAN/ACAN-notes.md",
          "sha256": "43932b5f505fa1e5b2c839497c8fb24814118c6d35032d8a14ab7288c169f5c4"
        },
        {
          "path": "genes/human/ACAN/ACAN-ai-review.html",
          "sha256": "cfec288695cd3613ac79022f87ea9835e336813f74c9ef5491f0d472aea55399"
        },
        {
          "path": "history/genes/human/ACAN/2026-09-26T224545Z-codex-15a4fd.yaml",
          "sha256": "f050c027adb625671463bce677e7e4df71db4a1b8620d56e52059e8092bc3751"
        }
      ],
      "publication_status": "Draft; biological feedback resolved; PMID:11222505 cache required",
      "publication_receipt": {
        "commit": "7d334c976aedc1e7b54b1a87c5cc04d05df9fdb6",
        "local_commit": "4b7e10806a0034a37352f196fc5bc003146dec13",
        "tree": "9fe41b153460de08308bb9bcf7e1ecca0a8f414b",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/7d334c976aedc1e7b54b1a87c5cc04d05df9fdb6"
      },
      "publication_history": [
        {
          "commit": "6d5d76be164916fcfa4def37053877d091b55291",
          "local_commit": "375639b177e1090107aba19f2d43a9fa9eb06e1a",
          "tree": "bbdf001c4e361f3f6b8d83b9540b41f8273cae3e",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/6d5d76be164916fcfa4def37053877d091b55291",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACAN/ACAN-ai-review.html",
              "sha256": "aefc2f0a575ddf14e86012f042d0b055180256508e604bf96f69a113ad7cc93c"
            },
            {
              "path": "genes/human/ACAN/ACAN-ai-review.yaml",
              "sha256": "12737d26b81875a1907d632253291e4b6dbfe3048f5c3aaadcd88c3602edd7e7"
            },
            {
              "path": "genes/human/ACAN/ACAN-notes.md",
              "sha256": "e810e71c89257242644091106388934e3582abb58374d0bf559af94bda8dc5b0"
            },
            {
              "path": "history/genes/human/ACAN/2026-09-26T213801Z-claude-code-f79b29.yaml",
              "sha256": "71226a773a05caac2666f377ec1740590a69bfa268986851d20e8ba945c1d9bf"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ],
      "expected_remote_head": "6d5d76be164916fcfa4def37053877d091b55291"
    },
    {
      "gene": "ACAT1",
      "pr": 3158,
      "branch": "cmungall/clingen-acat1",
      "kind": "followup",
      "expected_remote_head": "dc50e2714d5edbaf79e0fcf32d5488d9351cbb89",
      "files": [
        {
          "path": "genes/human/ACAT1/ACAT1-ai-review.yaml",
          "sha256": "8644d41bed484a4b53135f61ba43fbcf56fcf02d8fe96a13410b57fc6512c644"
        },
        {
          "path": "genes/human/ACAT1/ACAT1-notes.md",
          "sha256": "942b6aa5a4d50bda9ef070899fcacf25d9f7e9f01122dc829dfb25200c5c0ae1"
        },
        {
          "path": "genes/human/ACAT1/ACAT1-ai-review.html",
          "sha256": "87d5243328b3b217c49c76b6cfbfe4f529a44fa0a5ea3b7caf2cbb8117b0701d"
        },
        {
          "path": "history/genes/human/ACAT1/2026-09-26T230401Z-codex-a6771c.yaml",
          "sha256": "b3726fb9a80124446013f46ef05cac0d4ef8a8fafa2e01333f8d47bd4d4d977c"
        }
      ],
      "pending_cached_publications": [
        "PMID:1672610",
        "PMID:1684101",
        "PMID:11988101",
        "PMID:2866764",
        "PMID:5166591",
        "PMID:7733320",
        "PMID:6144148",
        "PMID:2985752"
      ],
      "validation": "Targeted gene validation, history validation and render all passed. Missing donor caches remain a draft gate; no source artifact edited.",
      "publication_receipt": {
        "commit": "9821fb5f03696715f44a7db0d8df483f2dcd4146",
        "local_commit": "438379bbe8214746db997e899927ab37b2132dc0",
        "tree": "b4253119ccf31f616fcd65983ed9ce1fd87c7508",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/9821fb5f03696715f44a7db0d8df483f2dcd4146"
      },
      "publication_status": "Draft; current head approved; eight donor caches required",
      "publication_history": [
        {
          "commit": "dc50e2714d5edbaf79e0fcf32d5488d9351cbb89",
          "local_commit": "4294023cd6913935e66ad58c4f8bfe7e5bbfa5af",
          "tree": "235aebc0ab215c1dde8999c3523662916a86f3be",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/dc50e2714d5edbaf79e0fcf32d5488d9351cbb89",
          "expected_remote_head": "21121fc735d20bcb2dbf8328aa82d5da30185e5e",
          "files": [
            {
              "path": "genes/human/ACAT1/ACAT1-ai-review.html",
              "sha256": "64f061f5e0fd3aaaac152dd1c2e4e45f73b3d2b6c290fd982e86a319716d6f70"
            },
            {
              "path": "genes/human/ACAT1/ACAT1-ai-review.yaml",
              "sha256": "d616897f33349a332b2e86cbbe44a838ebfa04a54e6ae9ddc86c21f8260a24d1"
            },
            {
              "path": "genes/human/ACAT1/ACAT1-notes.md",
              "sha256": "59dc1d0d09db1dd30ddf93f16105ee9b15ddd26f87b4c31ec06827666f05c19f"
            },
            {
              "path": "history/genes/human/ACAT1/2026-09-26T221947Z-codex-1c271d.yaml",
              "sha256": "88ce13a1554c06734832fef63fa39d94c5d3bfd2d2926e24d7c10b840ba75347"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ]
    },
    {
      "gene": "ACOX1",
      "pr": 3159,
      "branch": "cmungall/clingen-acox1",
      "kind": "followup",
      "expected_remote_head": "b20ec9335648e5bb98c87e60aa0d53e63f482f38",
      "files": [
        {
          "path": "genes/human/ACOX1/ACOX1-ai-review.yaml",
          "sha256": "a22cdcb755b3abb8f2d8a314921bf6e8b46878d551ba658c5ff97366c4dd7277"
        },
        {
          "path": "genes/human/ACOX1/ACOX1-ai-review.html",
          "sha256": "f0323cfab156b47262e7353f31478a6af44d0e2f09eb528826bdb2048fad6fc8"
        },
        {
          "path": "genes/human/ACOX1/ACOX1-notes.md",
          "sha256": "bdd94e35e780d43da6f7c9808f571909b6392ca71c78a43d6594e3e2cf8b4c36"
        },
        {
          "path": "history/genes/human/ACOX1/2026-09-26T230647Z-codex-8691c4.yaml",
          "sha256": "9ad76033438929ead467242b7bbd334fa765d40098f39b0d5de25a87fb37933e"
        }
      ],
      "validation": {
        "gene": "Passed with one reference-warning category: three fetch warnings for the same missing PMID:16672280",
        "history": "Passed, no issues",
        "render": "Passed; revised binding/provenance/process text confirmed in HTML",
        "yaml_trailing_whitespace": 0
      },
      "publication_receipt": {
        "commit": "a6069e17b0055b08fea3eba788d759c16318e8a0",
        "local_commit": "a563beab663a78097451ac4ca6f1bda0cf5cf0db",
        "tree": "2de4ef96de6576201e1cfd8fb94e6c55ef9b4766",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/a6069e17b0055b08fea3eba788d759c16318e8a0"
      },
      "pending_cached_publications": [
        "PMID:16672280"
      ],
      "publication_status": "Draft; all biological feedback resolved; PMID:16672280 cache required",
      "publication_history": [
        {
          "commit": "b20ec9335648e5bb98c87e60aa0d53e63f482f38",
          "local_commit": "c21b1cab11567298e034e9fd68ea25cb9693b3c6",
          "tree": "670e1f8fb0861dee934b91855f3595cceee553a1",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/b20ec9335648e5bb98c87e60aa0d53e63f482f38",
          "expected_remote_head": "e0d565bddebefd72f7c1c32562b588f75a893f69",
          "files": [
            {
              "path": "genes/human/ACOX1/ACOX1-ai-review.html",
              "sha256": "5ec3eb22e9a8b9816ac8de50fe4d360293787b4489f32abf37ef03c9b5ead9ea"
            },
            {
              "path": "genes/human/ACOX1/ACOX1-ai-review.yaml",
              "sha256": "ff3ca1cc43aa629d5d364cd9b9797975ceb09b3a057798d7af200085465d19fc"
            },
            {
              "path": "genes/human/ACOX1/ACOX1-notes.md",
              "sha256": "7564db13cbd0a8c71cc7c0383d8e6a4b25965b8ecc10befd62458552a04ec15b"
            },
            {
              "path": "history/genes/human/ACOX1/2026-09-26T224055Z-codex-47da40.yaml",
              "sha256": "50f86184ecb41d649bca63def8305a9a5986c104721157376e6fc247a9c90996"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ]
    },
    {
      "gene": "ACOX2",
      "pr": 3161,
      "branch": "cmungall/clingen-acox2",
      "kind": "followup",
      "expected_remote_head": "dda08a47bbe1ebb4a788a579d5a410f2456afd55",
      "files": [
        {
          "path": "genes/human/ACOX2/ACOX2-ai-review.yaml",
          "sha256": "f9dd26ff1e1c0900d3957d513962effbcfa8840652100c6f12f639ea748a2c68"
        },
        {
          "path": "genes/human/ACOX2/ACOX2-notes.md",
          "sha256": "615f88b7d9f4a1cc3c71905e3f02cb398a89da76122344ed5469a6045c71b3ce"
        },
        {
          "path": "genes/human/ACOX2/ACOX2-ai-review.html",
          "sha256": "663fe3cfbce42865ca84642812c7e3e1a4e411311ebdc149943f0732e1790712"
        },
        {
          "path": "history/genes/human/ACOX2/2026-09-26T233043Z-codex-1f240b.yaml",
          "sha256": "9639f410f685c3cdb4c447f934e160e0b9903de1166fc6446207f49241adb814"
        }
      ],
      "validation": "Targeted gene validation, history validation and rendering pass; only gene warning is unavailable PMID9218493/PMID8387517. All six notes-inclusive missing caches remain a hard draft gate.",
      "publication_receipt": {
        "commit": "f47396930afe7737f2eb0149e491b44ca529fb8a",
        "local_commit": "a35442a2cc60da4da9b0c73613ca1f050727ecee",
        "tree": "f90ec08d31a77eb8c5035882133fda106da4d6c9",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/f47396930afe7737f2eb0149e491b44ca529fb8a"
      },
      "pending_cached_publications": [
        "PMID:16672280",
        "PMID:27647924",
        "PMID:8026493",
        "PMID:8387517",
        "PMID:8654595",
        "PMID:9218493"
      ],
      "publication_status": "Draft; reaction and preparation-scope follow-up published; re-review and six caches pending",
      "publication_history": [
        {
          "commit": "dda08a47bbe1ebb4a788a579d5a410f2456afd55",
          "local_commit": "c61441feff403f53165bb24d9cd023e00c54d595",
          "tree": "279d6016926cdc46fe1e2d51587dc78df21cb1b7",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/dda08a47bbe1ebb4a788a579d5a410f2456afd55",
          "expected_remote_head": "0efff18e63a816029f64fa64bea40bef0c68c320",
          "files": [
            {
              "path": "genes/human/ACOX2/ACOX2-ai-review.html",
              "sha256": "a7ae7565261c661063f75197b5a51b3529dbbdc279f338ad95eb178b17edd64f"
            },
            {
              "path": "genes/human/ACOX2/ACOX2-ai-review.yaml",
              "sha256": "619bb984d63da41190de5ee2dce87a455b1b3cecd4cf0c7abdd4a06403d97554"
            },
            {
              "path": "genes/human/ACOX2/ACOX2-notes.md",
              "sha256": "150ba1d0e9b949fdcaa245095f0e61ee9a8937479ca35a328bb3cc2bd573c707"
            },
            {
              "path": "history/genes/human/ACOX2/2026-09-26T225321Z-codex-9db6e6.yaml",
              "sha256": "9d523f6150176ef829e1af0b48aeb40288d639facf9d5eed91f69001af270853"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ]
    },
    {
      "gene": "ACSL4",
      "pr": 3160,
      "branch": "cmungall/clingen-acsl4",
      "kind": "followup",
      "expected_remote_head": "41fcbf7e917a74748edb17b5b8bb2a66fd6dd3a9",
      "files": [
        {
          "path": "genes/human/ACSL4/ACSL4-ai-review.yaml",
          "sha256": "474affa196dc0a7c75cd08603ded80816f578fa658f1038c57f939f1ef1baacb"
        },
        {
          "path": "genes/human/ACSL4/ACSL4-ai-review.html",
          "sha256": "a73fc2c07104ac41758ab70e27c559ea8c4843f07866aef608d5ef6608d82b53"
        },
        {
          "path": "genes/human/ACSL4/ACSL4-notes.md",
          "sha256": "cfa373a88cc14e9d8745890d5ca1fa583122224d2f223fec178ddd15d2fd9138"
        },
        {
          "path": "history/genes/human/ACSL4/2026-09-26T232241Z-codex-da6593.yaml",
          "sha256": "1c8fe94476e944b583969feee27de052194afaa213396670a2041fa9d80bd607"
        }
      ],
      "validation": {
        "gene": "PASS",
        "gene_log": "/tmp/acsl4-followup-validation.log",
        "warning": "Pre-existing unused-provider-report advisory only; notes-only missing cache is outside validator coverage.",
        "history": "PASS",
        "history_log": "/tmp/acsl4-followup-history-validation.log",
        "render": "PASS",
        "render_log": "/tmp/acsl4-followup-render.log",
        "source_integrity": "51/51 source assertions and alternative products unchanged; actions unchanged; notes append-only; immutable source/cache/publication/published-history hashes unchanged",
        "quotes": "All quotations in the four edited review subtrees match their immutable cached sources after whitespace normalization."
      },
      "publication_receipt": {
        "commit": "bc01723824620aa2ff83aec7e3140b7a93791676",
        "local_commit": "a4e150a7199a9d0f297aed437817eff45b10ce02",
        "tree": "c939b14e962ccb938224948c297699f254847822",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/bc01723824620aa2ff83aec7e3140b7a93791676"
      },
      "pending_cached_publications": [
        "PMID:23766516"
      ],
      "publication_status": "Draft; current head approved; notes-only PMID:23766516 cache required",
      "publication_history": [
        {
          "commit": "41fcbf7e917a74748edb17b5b8bb2a66fd6dd3a9",
          "local_commit": "10a8afb7c7effc3700000acb4cda28d5a5123311",
          "tree": "a39a2ff18b15c0d1319ca363648d27ee2b590565",
          "tree_matches_local_commit": true,
          "method": "GitHub createCommitOnBranch with expected-head check",
          "url": "https://github.com/ai4curation/ai-gene-review/commit/41fcbf7e917a74748edb17b5b8bb2a66fd6dd3a9",
          "expected_remote_head": "ef291d796fd8ca62db39b3549293d06e61c1004e",
          "files": [
            {
              "path": "genes/human/ACSL4/ACSL4-ai-review.html",
              "sha256": "f536e4bcaa5680c10374b8f9b59903a43ea9aa01e9a08559ba6c46361a8a11d5"
            },
            {
              "path": "genes/human/ACSL4/ACSL4-ai-review.yaml",
              "sha256": "aac015043450abfe893adc46a722b8f28e9a695e62afa97e317ddbb036ae914e"
            },
            {
              "path": "genes/human/ACSL4/ACSL4-notes.md",
              "sha256": "bc0fd187cbea74e2cbe1270a588f07ae78dde2be1a74f59832b219a061d87213"
            },
            {
              "path": "history/genes/human/ACSL4/2026-09-26T224730Z-codex-142634.yaml",
              "sha256": "4d515c3ae0a0953845e90fb2d09cfdb667957de3a451eaf21c54ecf42f4fc8f4"
            }
          ],
          "manifest_recovery": "Exact changed paths and SHA-256 hashes verified from the immutable published commit"
        }
      ]
    },
    {
      "gene": "ACTA1",
      "pr": 3163,
      "branch": "cmungall/clingen-acta1",
      "kind": "initial",
      "expected_remote_head": "0efff18e63a816029f64fa64bea40bef0c68c320",
      "files": [
        {
          "path": "genes/human/ACTA1/ACTA1-ai-review.yaml",
          "sha256": "fcceea132c97e1b9db2c4c8f48553b2fdbcf37dcc7d90110de22a89d755f1208"
        },
        {
          "path": "genes/human/ACTA1/ACTA1-notes.md",
          "sha256": "097219f7dd8a7895a0b68dad16982abcf149381f4e569939b0f0c95e062fdf99"
        },
        {
          "path": "genes/human/ACTA1/ACTA1-ai-review.html",
          "sha256": "3d9220f908ae9bd737368cfe8976feead682846c21d2772686e3009037cff2b8"
        },
        {
          "path": "history/genes/human/ACTA1/2026-09-26T231145Z-codex-bdd531.yaml",
          "sha256": "cb8e077a71ab73420410ce76d4be4e27caeb424060cb46c005f3e2eb99abfa4b"
        }
      ],
      "validation": {
        "gene": "PASS",
        "history": "PASS",
        "render": "PASS",
        "source_rows": "51/51 unchanged outside review; 50 seeded plus prior proposal",
        "references": "38/38 identifiers and titles preserved",
        "quotes": "60 cached quotes and 2 external fulltext quotes checked",
        "required_pmids": "23/23 YAML and notes citations cached",
        "immutable_sources": "GOA, UniProt, genuine Affinage byte-identical to baseline",
        "whitespace": "No trailing YAML spaces; removal parsed-equal",
        "warnings": [
          "Source-context cytosol ACCEPT/NON_CORE split",
          "Available provider report not cited as primary annotation support"
        ]
      },
      "publication_receipt": {
        "commit": "00e6491a503fe7dd65f62f67d04d3e064d7e2a5b",
        "local_commit": "e5710e05625da46fe61bf3131f79cd6f9033d78c",
        "tree": "8d5e0de6571029bcdd5301f17970e15de90aea89",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/00e6491a503fe7dd65f62f67d04d3e064d7e2a5b"
      },
      "pending_cached_publications": [],
      "publication_status": "Published; review follow-up in progress"
    },
    {
      "gene": "ACTA2",
      "pr": 3164,
      "branch": "cmungall/clingen-acta2",
      "kind": "initial",
      "expected_remote_head": "af7a6ea1c9a6dd7ceecc8b04b120577d1a4070cb",
      "files": [
        {
          "path": "genes/human/ACTA2/ACTA2-ai-review.html",
          "sha256": "06c0b128aa55b6514d64d6ebff58c6c840598f87607afee320210c075cb4eaa9"
        },
        {
          "path": "genes/human/ACTA2/ACTA2-ai-review.yaml",
          "sha256": "b686a77c3940807823215df6cbbc85502d6bc2351a3e172263b0bad80484dbd1"
        },
        {
          "path": "genes/human/ACTA2/ACTA2-notes.md",
          "sha256": "4a71ba8140b22f74620d1fec4816e3d21c4cb8a6da4560093dce02e6020647c9"
        },
        {
          "path": "history/genes/human/ACTA2/2026-09-26T232414Z-codex-231438.yaml",
          "sha256": "92033a9ff8b910defd2de8db79d14b2b661158a7686500c70a7eba537e95e2a5"
        }
      ],
      "validation": "Targeted validation passed with one advisory: no annotation cites the Affinage report. Primary sources ground decisions. History and render validated separately.",
      "publication_receipt": {
        "commit": "45e0a9ceda8dfce51f0917c3da490bd9c917bea9",
        "local_commit": "8cf4576fb5b437a813d1ee9a019fc1c3a3ab18fb",
        "tree": "28b7c7497c9bca58ddba77422a28c06da7214ed2",
        "tree_matches_local_commit": true,
        "method": "GitHub createCommitOnBranch with expected-head check",
        "url": "https://github.com/ai4curation/ai-gene-review/commit/45e0a9ceda8dfce51f0917c3da490bd9c917bea9"
      },
      "pending_cached_publications": [],
      "publication_status": "Published; current-head review and CI pending"
    }
  ],
  "review_service": {
    "status": "Current reviews operating; earlier session-limit failure is historical",
    "earlier_limit_reported_reset_utc": "2026-09-27T01:00:00Z",
    "recovery_evidence": "Current-head approvals and successful CI preceded confirmed ABCB4, ABCC9, ACADS and ACADSB merges; draft follow-ups receive new reviews",
    "retry_policy": "Check current run results before retrying; no repeated retries on an unchanged failure"
  }
}
