# Generated by score_emapper.py; do not edit by hand.
review_snapshot: b9da9839c
go_release: '2026-03-25'
leaf_reduction_releases:
- '2019-07-01'
- '2020-12-08'
- '2026-03-25'
cohort_size: 520
runs:
  default:
    description: all orthologs (emapper defaults)
    proteins_annotated: 515
    proteins_with_go: 449
    leaf_terms: 9050
    leaf_categories:
      EXACT: 3614
      BROADER: 159
      NARROWER: 1033
      DOWNGRADED: 542
      REJECTED: 152
      UNDECIDED: 44
      UNRELATED: 3506
    leaf_categories_by_aspect:
      MF:
        EXACT: 761
        BROADER: 42
        NARROWER: 83
        DOWNGRADED: 199
        REJECTED: 38
        UNDECIDED: 3
        UNRELATED: 337
      BP:
        EXACT: 2029
        BROADER: 84
        NARROWER: 598
        DOWNGRADED: 295
        REJECTED: 86
        UNDECIDED: 32
        UNRELATED: 2797
      CC:
        EXACT: 824
        BROADER: 33
        NARROWER: 352
        DOWNGRADED: 48
        REJECTED: 28
        UNDECIDED: 9
        UNRELATED: 372
    core_terms: 2391
    core_terms_recovered: 1583
    core_recall: 0.662
    core_in_goa: 2064
    core_emapper_only: 54
    obsolete_leaves_dropped: 447
    by_stratum:
      ARATH:
        proteins: 40
        with_go: 38
        leaves: 318
        exact: 198
        broader: 21
        narrower: 13
        downgraded: 23
        rejected: 4
        undecided: 1
        unrelated: 58
        core_recall: 0.5
        core_terms: 180
        core_in_goa: 135
        core_emapper_only: 0
      DANRE:
        proteins: 40
        with_go: 34
        leaves: 837
        exact: 172
        broader: 8
        narrower: 141
        downgraded: 30
        rejected: 11
        undecided: 1
        unrelated: 474
        core_recall: 0.717
        core_terms: 159
        core_in_goa: 145
        core_emapper_only: 5
      DICDI:
        proteins: 40
        with_go: 36
        leaves: 501
        exact: 319
        broader: 9
        narrower: 36
        downgraded: 10
        rejected: 3
        undecided: 7
        unrelated: 117
        core_recall: 0.687
        core_terms: 211
        core_in_goa: 200
        core_emapper_only: 2
      DROME:
        proteins: 40
        with_go: 40
        leaves: 1007
        exact: 268
        broader: 15
        narrower: 117
        downgraded: 43
        rejected: 7
        undecided: 5
        unrelated: 552
        core_recall: 0.786
        core_terms: 220
        core_in_goa: 195
        core_emapper_only: 12
      ECOLI:
        proteins: 40
        with_go: 37
        leaves: 193
        exact: 139
        broader: 7
        narrower: 4
        downgraded: 22
        rejected: 4
        undecided: 0
        unrelated: 17
        core_recall: 0.568
        core_terms: 169
        core_in_goa: 138
        core_emapper_only: 2
      PSEPK:
        proteins: 40
        with_go: 20
        leaves: 92
        exact: 51
        broader: 3
        narrower: 2
        downgraded: 7
        rejected: 2
        undecided: 1
        unrelated: 26
        core_recall: 0.382
        core_terms: 110
        core_in_goa: 89
        core_emapper_only: 1
      SCHPO:
        proteins: 40
        with_go: 36
        leaves: 361
        exact: 146
        broader: 14
        narrower: 36
        downgraded: 15
        rejected: 2
        undecided: 2
        unrelated: 146
        core_recall: 0.655
        core_terms: 168
        core_in_goa: 154
        core_emapper_only: 5
      human:
        proteins: 40
        with_go: 37
        leaves: 586
        exact: 244
        broader: 17
        narrower: 38
        downgraded: 39
        rejected: 8
        undecided: 6
        unrelated: 234
        core_recall: 0.634
        core_terms: 224
        core_in_goa: 178
        core_emapper_only: 5
      mouse:
        proteins: 40
        with_go: 39
        leaves: 2427
        exact: 1155
        broader: 32
        narrower: 320
        downgraded: 156
        rejected: 54
        undecided: 13
        unrelated: 697
        core_recall: 0.808
        core_terms: 271
        core_in_goa: 246
        core_emapper_only: 6
      other:
        proteins: 40
        with_go: 18
        leaves: 229
        exact: 44
        broader: 3
        narrower: 40
        downgraded: 23
        rejected: 3
        undecided: 3
        unrelated: 113
        core_recall: 0.273
        core_terms: 128
        core_in_goa: 87
        core_emapper_only: 5
      rat:
        proteins: 40
        with_go: 40
        leaves: 1317
        exact: 501
        broader: 15
        narrower: 111
        downgraded: 118
        rejected: 40
        undecided: 2
        unrelated: 530
        core_recall: 0.808
        core_terms: 167
        core_in_goa: 162
        core_emapper_only: 0
      worm:
        proteins: 40
        with_go: 36
        leaves: 793
        exact: 183
        broader: 9
        narrower: 123
        downgraded: 35
        rejected: 13
        undecided: 2
        unrelated: 428
        core_recall: 0.726
        core_terms: 175
        core_in_goa: 146
        core_emapper_only: 7
      yeast:
        proteins: 40
        with_go: 38
        leaves: 389
        exact: 194
        broader: 6
        narrower: 52
        downgraded: 21
        rejected: 1
        undecided: 1
        unrelated: 114
        core_recall: 0.742
        core_terms: 209
        core_in_goa: 189
        core_emapper_only: 4
  species_excluded:
    description: orthologs from the query's own species excluded (--excluded_taxa)
    proteins_annotated: 515
    proteins_with_go: 332
    leaf_terms: 6674
    leaf_categories:
      EXACT: 2207
      BROADER: 149
      NARROWER: 825
      DOWNGRADED: 406
      REJECTED: 118
      UNDECIDED: 21
      UNRELATED: 2948
    leaf_categories_by_aspect:
      MF:
        EXACT: 557
        BROADER: 28
        NARROWER: 50
        DOWNGRADED: 135
        REJECTED: 28
        UNDECIDED: 2
        UNRELATED: 295
      BP:
        EXACT: 1100
        BROADER: 94
        NARROWER: 464
        DOWNGRADED: 228
        REJECTED: 70
        UNDECIDED: 14
        UNRELATED: 2339
      CC:
        EXACT: 550
        BROADER: 27
        NARROWER: 311
        DOWNGRADED: 43
        REJECTED: 20
        UNDECIDED: 5
        UNRELATED: 314
    core_terms: 2391
    core_terms_recovered: 1040
    core_recall: 0.435
    core_in_goa: 2064
    core_emapper_only: 45
    obsolete_leaves_dropped: 294
    by_stratum:
      ARATH:
        proteins: 40
        with_go: 17
        leaves: 81
        exact: 48
        broader: 6
        narrower: 3
        downgraded: 6
        rejected: 2
        undecided: 0
        unrelated: 16
        core_recall: 0.144
        core_terms: 180
        core_in_goa: 135
        core_emapper_only: 0
      DANRE:
        proteins: 40
        with_go: 33
        leaves: 769
        exact: 122
        broader: 10
        narrower: 133
        downgraded: 28
        rejected: 7
        undecided: 1
        unrelated: 468
        core_recall: 0.629
        core_terms: 159
        core_in_goa: 145
        core_emapper_only: 5
      DICDI:
        proteins: 40
        with_go: 1
        leaves: 24
        exact: 3
        broader: 0
        narrower: 1
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 20
        core_recall: 0.009
        core_terms: 211
        core_in_goa: 200
        core_emapper_only: 1
      DROME:
        proteins: 40
        with_go: 32
        leaves: 789
        exact: 117
        broader: 20
        narrower: 102
        downgraded: 38
        rejected: 4
        undecided: 1
        unrelated: 507
        core_recall: 0.468
        core_terms: 220
        core_in_goa: 195
        core_emapper_only: 8
      ECOLI:
        proteins: 40
        with_go: 12
        leaves: 36
        exact: 26
        broader: 2
        narrower: 1
        downgraded: 3
        rejected: 0
        undecided: 0
        unrelated: 4
        core_recall: 0.124
        core_terms: 169
        core_in_goa: 138
        core_emapper_only: 0
      PSEPK:
        proteins: 40
        with_go: 19
        leaves: 90
        exact: 50
        broader: 2
        narrower: 2
        downgraded: 7
        rejected: 2
        undecided: 1
        unrelated: 26
        core_recall: 0.373
        core_terms: 110
        core_in_goa: 89
        core_emapper_only: 1
      SCHPO:
        proteins: 40
        with_go: 30
        leaves: 248
        exact: 85
        broader: 12
        narrower: 27
        downgraded: 13
        rejected: 2
        undecided: 2
        unrelated: 107
        core_recall: 0.452
        core_terms: 168
        core_in_goa: 154
        core_emapper_only: 4
      human:
        proteins: 40
        with_go: 35
        leaves: 481
        exact: 211
        broader: 12
        narrower: 31
        downgraded: 31
        rejected: 6
        undecided: 4
        unrelated: 186
        core_recall: 0.522
        core_terms: 224
        core_in_goa: 178
        core_emapper_only: 4
      mouse:
        proteins: 40
        with_go: 38
        leaves: 1867
        exact: 860
        broader: 47
        narrower: 237
        downgraded: 123
        rejected: 43
        undecided: 9
        unrelated: 548
        core_recall: 0.734
        core_terms: 271
        core_in_goa: 246
        core_emapper_only: 6
      other:
        proteins: 40
        with_go: 18
        leaves: 221
        exact: 41
        broader: 3
        narrower: 40
        downgraded: 21
        rejected: 3
        undecided: 0
        unrelated: 113
        core_recall: 0.258
        core_terms: 128
        core_in_goa: 87
        core_emapper_only: 5
      rat:
        proteins: 40
        with_go: 40
        leaves: 1153
        exact: 449
        broader: 17
        narrower: 96
        downgraded: 100
        rejected: 40
        undecided: 2
        unrelated: 449
        core_recall: 0.778
        core_terms: 167
        core_in_goa: 162
        core_emapper_only: 0
      worm:
        proteins: 40
        with_go: 29
        leaves: 677
        exact: 88
        broader: 11
        narrower: 120
        downgraded: 27
        rejected: 9
        undecided: 1
        unrelated: 421
        core_recall: 0.52
        core_terms: 175
        core_in_goa: 146
        core_emapper_only: 7
      yeast:
        proteins: 40
        with_go: 28
        leaves: 238
        exact: 107
        broader: 7
        narrower: 32
        downgraded: 9
        rejected: 0
        undecided: 0
        unrelated: 83
        core_recall: 0.483
        core_terms: 209
        core_in_goa: 189
        core_emapper_only: 4
  species_excluded_experimental:
    description: own species excluded, experimental GO evidence only (--go_evidence
      experimental)
    proteins_annotated: 515
    proteins_with_go: 288
    leaf_terms: 4941
    leaf_categories:
      EXACT: 1560
      BROADER: 122
      NARROWER: 562
      DOWNGRADED: 298
      REJECTED: 92
      UNDECIDED: 11
      UNRELATED: 2296
    leaf_categories_by_aspect:
      MF:
        EXACT: 394
        BROADER: 23
        NARROWER: 30
        DOWNGRADED: 94
        REJECTED: 16
        UNDECIDED: 1
        UNRELATED: 202
      BP:
        EXACT: 750
        BROADER: 67
        NARROWER: 320
        DOWNGRADED: 175
        REJECTED: 58
        UNDECIDED: 6
        UNRELATED: 1859
      CC:
        EXACT: 416
        BROADER: 32
        NARROWER: 212
        DOWNGRADED: 29
        REJECTED: 18
        UNDECIDED: 4
        UNRELATED: 235
    core_terms: 2391
    core_terms_recovered: 767
    core_recall: 0.321
    core_in_goa: 2064
    core_emapper_only: 32
    obsolete_leaves_dropped: 198
    by_stratum:
      ARATH:
        proteins: 40
        with_go: 12
        leaves: 58
        exact: 38
        broader: 2
        narrower: 0
        downgraded: 6
        rejected: 1
        undecided: 0
        unrelated: 11
        core_recall: 0.106
        core_terms: 180
        core_in_goa: 135
        core_emapper_only: 0
      DANRE:
        proteins: 40
        with_go: 32
        leaves: 670
        exact: 109
        broader: 10
        narrower: 104
        downgraded: 25
        rejected: 7
        undecided: 1
        unrelated: 414
        core_recall: 0.522
        core_terms: 159
        core_in_goa: 145
        core_emapper_only: 4
      DICDI:
        proteins: 40
        with_go: 1
        leaves: 23
        exact: 3
        broader: 0
        narrower: 1
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 19
        core_recall: 0.009
        core_terms: 211
        core_in_goa: 200
        core_emapper_only: 1
      DROME:
        proteins: 40
        with_go: 31
        leaves: 651
        exact: 97
        broader: 18
        narrower: 78
        downgraded: 27
        rejected: 4
        undecided: 1
        unrelated: 426
        core_recall: 0.364
        core_terms: 220
        core_in_goa: 195
        core_emapper_only: 6
      ECOLI:
        proteins: 40
        with_go: 1
        leaves: 3
        exact: 3
        broader: 0
        narrower: 0
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 0
        core_recall: 0.018
        core_terms: 169
        core_in_goa: 138
        core_emapper_only: 0
      PSEPK:
        proteins: 40
        with_go: 16
        leaves: 57
        exact: 33
        broader: 1
        narrower: 2
        downgraded: 6
        rejected: 0
        undecided: 1
        unrelated: 14
        core_recall: 0.264
        core_terms: 110
        core_in_goa: 89
        core_emapper_only: 1
      SCHPO:
        proteins: 40
        with_go: 30
        leaves: 220
        exact: 74
        broader: 12
        narrower: 26
        downgraded: 10
        rejected: 1
        undecided: 1
        unrelated: 96
        core_recall: 0.393
        core_terms: 168
        core_in_goa: 154
        core_emapper_only: 3
      human:
        proteins: 40
        with_go: 28
        leaves: 311
        exact: 112
        broader: 7
        narrower: 22
        downgraded: 16
        rejected: 3
        undecided: 2
        unrelated: 149
        core_recall: 0.308
        core_terms: 224
        core_in_goa: 178
        core_emapper_only: 4
      mouse:
        proteins: 40
        with_go: 37
        leaves: 1348
        exact: 650
        broader: 38
        narrower: 148
        downgraded: 90
        rejected: 36
        undecided: 3
        unrelated: 383
        core_recall: 0.598
        core_terms: 271
        core_in_goa: 246
        core_emapper_only: 1
      other:
        proteins: 40
        with_go: 13
        leaves: 156
        exact: 28
        broader: 2
        narrower: 27
        downgraded: 13
        rejected: 2
        undecided: 0
        unrelated: 84
        core_recall: 0.195
        core_terms: 128
        core_in_goa: 87
        core_emapper_only: 3
      rat:
        proteins: 40
        with_go: 39
        leaves: 743
        exact: 284
        broader: 17
        narrower: 49
        downgraded: 76
        rejected: 32
        undecided: 1
        unrelated: 284
        core_recall: 0.569
        core_terms: 167
        core_in_goa: 162
        core_emapper_only: 0
      worm:
        proteins: 40
        with_go: 29
        leaves: 549
        exact: 77
        broader: 11
        narrower: 82
        downgraded: 23
        rejected: 6
        undecided: 1
        unrelated: 349
        core_recall: 0.451
        core_terms: 175
        core_in_goa: 146
        core_emapper_only: 7
      yeast:
        proteins: 40
        with_go: 19
        leaves: 152
        exact: 52
        broader: 4
        narrower: 23
        downgraded: 6
        rejected: 0
        undecided: 0
        unrelated: 67
        core_recall: 0.263
        core_terms: 209
        core_in_goa: 189
        core_emapper_only: 2
  species_excluded_narrow:
    description: own species excluded, with --tax_scope all_narrow
    proteins_annotated: 515
    proteins_with_go: 92
    leaf_terms: 1723
    leaf_categories:
      EXACT: 891
      BROADER: 42
      NARROWER: 116
      DOWNGRADED: 131
      REJECTED: 68
      UNDECIDED: 7
      UNRELATED: 468
    leaf_categories_by_aspect:
      MF:
        EXACT: 191
        BROADER: 4
        NARROWER: 10
        DOWNGRADED: 33
        REJECTED: 15
        UNDECIDED: 1
        UNRELATED: 42
      BP:
        EXACT: 483
        BROADER: 32
        NARROWER: 68
        DOWNGRADED: 87
        REJECTED: 45
        UNDECIDED: 5
        UNRELATED: 377
      CC:
        EXACT: 217
        BROADER: 6
        NARROWER: 38
        DOWNGRADED: 11
        REJECTED: 8
        UNDECIDED: 1
        UNRELATED: 49
    core_terms: 2391
    core_terms_recovered: 283
    core_recall: 0.118
    core_in_goa: 2064
    core_emapper_only: 8
    obsolete_leaves_dropped: 103
    by_stratum:
      ARATH:
        proteins: 40
        with_go: 0
        leaves: 0
        exact: 0
        broader: 0
        narrower: 0
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 0
        core_recall: 0.0
        core_terms: 180
        core_in_goa: 135
        core_emapper_only: 0
      DANRE:
        proteins: 40
        with_go: 1
        leaves: 104
        exact: 6
        broader: 0
        narrower: 16
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 82
        core_recall: 0.038
        core_terms: 159
        core_in_goa: 145
        core_emapper_only: 1
      DICDI:
        proteins: 40
        with_go: 1
        leaves: 24
        exact: 3
        broader: 0
        narrower: 1
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 20
        core_recall: 0.009
        core_terms: 211
        core_in_goa: 200
        core_emapper_only: 1
      DROME:
        proteins: 40
        with_go: 1
        leaves: 2
        exact: 2
        broader: 0
        narrower: 0
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 0
        core_recall: 0.005
        core_terms: 220
        core_in_goa: 195
        core_emapper_only: 0
      ECOLI:
        proteins: 40
        with_go: 0
        leaves: 0
        exact: 0
        broader: 0
        narrower: 0
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 0
        core_recall: 0.0
        core_terms: 169
        core_in_goa: 138
        core_emapper_only: 0
      PSEPK:
        proteins: 40
        with_go: 3
        leaves: 16
        exact: 7
        broader: 1
        narrower: 1
        downgraded: 0
        rejected: 1
        undecided: 0
        unrelated: 6
        core_recall: 0.055
        core_terms: 110
        core_in_goa: 89
        core_emapper_only: 0
      SCHPO:
        proteins: 40
        with_go: 7
        leaves: 38
        exact: 15
        broader: 1
        narrower: 4
        downgraded: 1
        rejected: 0
        undecided: 1
        unrelated: 16
        core_recall: 0.065
        core_terms: 168
        core_in_goa: 154
        core_emapper_only: 0
      human:
        proteins: 40
        with_go: 5
        leaves: 32
        exact: 22
        broader: 0
        narrower: 3
        downgraded: 2
        rejected: 0
        undecided: 0
        unrelated: 5
        core_recall: 0.054
        core_terms: 224
        core_in_goa: 178
        core_emapper_only: 1
      mouse:
        proteins: 40
        with_go: 26
        leaves: 601
        exact: 376
        broader: 26
        narrower: 25
        downgraded: 26
        rejected: 30
        undecided: 4
        unrelated: 114
        core_recall: 0.38
        core_terms: 271
        core_in_goa: 246
        core_emapper_only: 2
      other:
        proteins: 40
        with_go: 9
        leaves: 113
        exact: 24
        broader: 0
        narrower: 21
        downgraded: 9
        rejected: 0
        undecided: 0
        unrelated: 59
        core_recall: 0.117
        core_terms: 128
        core_in_goa: 87
        core_emapper_only: 3
      rat:
        proteins: 40
        with_go: 38
        leaves: 777
        exact: 426
        broader: 14
        narrower: 44
        downgraded: 88
        rejected: 37
        undecided: 2
        unrelated: 166
        core_recall: 0.713
        core_terms: 167
        core_in_goa: 162
        core_emapper_only: 0
      worm:
        proteins: 40
        with_go: 0
        leaves: 0
        exact: 0
        broader: 0
        narrower: 0
        downgraded: 0
        rejected: 0
        undecided: 0
        unrelated: 0
        core_recall: 0.0
        core_terms: 175
        core_in_goa: 146
        core_emapper_only: 0
      yeast:
        proteins: 40
        with_go: 1
        leaves: 16
        exact: 10
        broader: 0
        narrower: 1
        downgraded: 5
        rejected: 0
        undecided: 0
        unrelated: 0
        core_recall: 0.038
        core_terms: 209
        core_in_goa: 189
        core_emapper_only: 0