{
  "checked_at": "2026-09-23T07:47:01.989098+00:00",
  "scope": "Bounded repairs to inspected manual prose in the 151 packaged gene reviews and their notes; entries enumerate corrected tokens, not a claim that all stylistic spacing is normalized.",
  "changed_genes": 27,
  "replacements": 109,
  "verification": "Parsed before/after YAML differs only in manually authored prose or file-reference titles. Original annotation fields, actions, term objects and supporting_text are identical. All restored PMID numbers have cached publications. URLs and filenames were protected.",
  "publications_added": [
    "PMID:7558035",
    "PMID:9678974"
  ],
  "changes": [
    {
      "path": "genes/9POAL/NCGR_LOCUS1270/NCGR_LOCUS1270-ai-review.yaml",
      "before": "GO0006000",
      "after": "GO:0006000"
    },
    {
      "path": "genes/9POAL/NCGR_LOCUS1270/NCGR_LOCUS1270-notes.md",
      "before": "TAS7558035",
      "after": "TAS PMID:7558035"
    },
    {
      "path": "genes/9POAL/NCGR_LOCUS1270/NCGR_LOCUS1270-notes.md",
      "before": "TAS9678974",
      "after": "TAS PMID:9678974"
    },
    {
      "path": "genes/9POAL/NCGR_LOCUS1270/NCGR_LOCUS1270-notes.md",
      "before": "IDA4308724",
      "after": "IDA PMID:4308724"
    },
    {
      "path": "genes/9POAL/NCGR_LOCUS1270/NCGR_LOCUS1270-notes.md",
      "before": "give400/413",
      "after": "give 400/413"
    },
    {
      "path": "genes/9POAL/NCGR_LOCUS1270/NCGR_LOCUS1270-notes.md",
      "before": "reference,317/421",
      "after": "reference, 317/421"
    },
    {
      "path": "genes/9POAL/NCGR_LOCUS1270/NCGR_LOCUS1270-notes.md",
      "before": "and171/418",
      "after": "and 171/418"
    },
    {
      "path": "genes/DAPPU/DpuGr29/DpuGr29-ai-review.yaml",
      "before": "preprint38187590",
      "after": "preprint PMID:38187590"
    },
    {
      "path": "genes/DAPPU/DpuGr29/DpuGr29-ai-review.yaml",
      "before": "final38573859",
      "after": "final PMID:38573859"
    },
    {
      "path": "genes/DAPPU/DpuGr29/DpuGr29-notes.md",
      "before": "PMID19383158",
      "after": "PMID:19383158"
    },
    {
      "path": "genes/DAPPU/DpuGr29/DpuGr29-notes.md",
      "before": "PMID38573859",
      "after": "PMID:38573859"
    },
    {
      "path": "genes/DAPPU/DpuGr29/DpuGr29-notes.md",
      "before": "GO0099094",
      "after": "GO:0099094"
    },
    {
      "path": "genes/DROME/Hsp22/Hsp22-notes.md",
      "before": "abstracts14734639",
      "after": "abstracts PMID:14734639"
    },
    {
      "path": "genes/METEA/mdcD/mdcD-ai-review.yaml",
      "before": "primary28757619",
      "after": "primary PMID:28757619"
    },
    {
      "path": "genes/NEUCR/glt-1/glt-1-notes.md",
      "before": "PMID24581151",
      "after": "PMID:24581151"
    },
    {
      "path": "genes/NEUCR/glt-1/glt-1-notes.md",
      "before": "PMID28115989",
      "after": "PMID:28115989"
    },
    {
      "path": "genes/NICAT/NaUGT1_candidate_UGT85A2_0/NaUGT1_candidate_UGT85A2_0-ai-review.yaml",
      "before": "PMID42151135",
      "after": "PMID:42151135"
    },
    {
      "path": "genes/NICAT/NaUGT1_candidate_UGT85A2_0/NaUGT1_candidate_UGT85A2_0-ai-review.yaml",
      "before": "PMID41928514",
      "after": "PMID:41928514"
    },
    {
      "path": "genes/NICAT/NaUGT1_candidate_UGT85A2_0/NaUGT1_candidate_UGT85A2_0-ai-review.yaml",
      "before": "PMID31611893",
      "after": "PMID:31611893"
    },
    {
      "path": "genes/PSEPK/moeB/moeB-notes.md",
      "before": "primary11713534",
      "after": "primary PMID:11713534"
    },
    {
      "path": "genes/PSEPK/ydiJ/ydiJ-notes.md",
      "before": "PMID31064836",
      "after": "PMID:31064836"
    },
    {
      "path": "genes/PSEPK/ydiJ/ydiJ-notes.md",
      "before": "PMID36144368",
      "after": "PMID:36144368"
    },
    {
      "path": "genes/PYROR/PoMZ_10221/PoMZ_10221-ai-review.yaml",
      "before": "PMID22102281",
      "after": "PMID:22102281"
    },
    {
      "path": "genes/PYROR/PoMZ_10221/PoMZ_10221-notes.md",
      "before": "PMID22102281",
      "after": "PMID:22102281"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "PMID20356456",
      "after": "PMID:20356456"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "PMID20356456",
      "after": "PMID:20356456"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "PMID20356456",
      "after": "PMID:20356456"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "PMID20356456",
      "after": "PMID:20356456"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "PMID20356456",
      "after": "PMID:20356456"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "PMID20356456",
      "after": "PMID:20356456"
    },
    {
      "path": "genes/SCHPO/trm402/trm402-ai-review.yaml",
      "before": "PMID23074192",
      "after": "PMID:23074192"
    },
    {
      "path": "genes/SCHPO/trm402/trm402-ai-review.yaml",
      "before": "PMID30646830",
      "after": "PMID:30646830"
    },
    {
      "path": "genes/STABO/mdr/mdr-notes.md",
      "before": "PMID34998388",
      "after": "PMID:34998388"
    },
    {
      "path": "genes/STABO/mdr/mdr-notes.md",
      "before": "PMID23516968",
      "after": "PMID:23516968"
    },
    {
      "path": "genes/STABO/mdr/mdr-notes.md",
      "before": "and23964782",
      "after": "and PMID:23964782"
    },
    {
      "path": "genes/human/A3GALT2/A3GALT2-notes.md",
      "before": "PMID10854427",
      "after": "PMID:10854427"
    },
    {
      "path": "genes/human/ARHGAP36/ARHGAP36-notes.md",
      "before": "primary32203420",
      "after": "primary PMID:32203420"
    },
    {
      "path": "genes/human/ELOVL6/ELOVL6-notes.md",
      "before": "PMID20937905",
      "after": "PMID:20937905"
    },
    {
      "path": "genes/human/LPAR3/LPAR3-ai-review.yaml",
      "before": "compare10727522",
      "after": "compare PMID:10727522"
    },
    {
      "path": "genes/human/LPGAT1/LPGAT1-ai-review.yaml",
      "before": "in42173283",
      "after": "in PMID:42173283"
    },
    {
      "path": "genes/human/SAMD8/SAMD8-ai-review.yaml",
      "before": "GO0002950",
      "after": "GO:0002950"
    },
    {
      "path": "genes/human/SAMD8/SAMD8-ai-review.yaml",
      "before": "GO0047493",
      "after": "GO:0047493"
    },
    {
      "path": "genes/human/SAMD8/SAMD8-ai-review.yaml",
      "before": "GO0002950",
      "after": "GO:0002950"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "full18835031",
      "after": "full PMID:18835031"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "full18443228",
      "after": "full PMID:18443228"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "PMID9144199",
      "after": "PMID:9144199"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "full18835031",
      "after": "full PMID:18835031"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "direct9843949",
      "after": "direct PMID:9843949"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "PMID9144199",
      "after": "PMID:9144199"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "PMID9144199",
      "after": "PMID:9144199"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "GO0046930",
      "after": "GO:0046930"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "PMID9144199",
      "after": "PMID:9144199"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "GO0046930",
      "after": "GO:0046930"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "experiments18835031",
      "after": "experiments PMID:18835031"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-ai-review.yaml",
      "before": "and18443228",
      "after": "and PMID:18443228"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "Full18835031",
      "after": "Full PMID:18835031"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "Full18443228",
      "after": "Full PMID:18443228"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "in18835031",
      "after": "in PMID:18835031"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "Full25182415",
      "after": "Full PMID:25182415"
    },
    {
      "path": "genes/rat/Aldh1l1/Aldh1l1-ai-review.yaml",
      "before": "PMID20498374",
      "after": "PMID:20498374"
    },
    {
      "path": "genes/worm/mex-5/mex-5-ai-review.yaml",
      "before": "PMID40354522",
      "after": "PMID:40354522"
    },
    {
      "path": "genes/worm/mex-5/mex-5-ai-review.yaml",
      "before": "PMID17264081",
      "after": "PMID:17264081"
    },
    {
      "path": "genes/worm/mex-5/mex-5-ai-review.yaml",
      "before": "PMID24131629",
      "after": "PMID:24131629"
    },
    {
      "path": "genes/worm/mex-6/mex-6-ai-review.yaml",
      "before": "PMID17264081",
      "after": "PMID:17264081"
    },
    {
      "path": "genes/worm/pgl-1/pgl-1-ai-review.yaml",
      "before": "PMID26787882",
      "after": "PMID:26787882"
    },
    {
      "path": "genes/yeast/ESL1/ESL1-ai-review.yaml",
      "before": "PMID23893744",
      "after": "PMID:23893744"
    },
    {
      "path": "genes/yeast/ESL1/ESL1-ai-review.yaml",
      "before": "Primary23893744",
      "after": "Primary PMID:23893744"
    },
    {
      "path": "genes/yeast/ESL1/ESL1-ai-review.yaml",
      "before": "fetched22544908",
      "after": "fetched PMID:22544908"
    },
    {
      "path": "genes/yeast/ILT1/ILT1-ai-review.yaml",
      "before": "PMID30045857",
      "after": "PMID:30045857"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "Primary18268013",
      "after": "Primary PMID:18268013"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "full-text20641022",
      "after": "full-text PMID:20641022"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "and35420390",
      "after": "and PMID:35420390"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "leafPTN000623199",
      "after": "leaf PTN000623199"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "nodePTN008603245",
      "after": "node PTN008603245"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "Primary18268013",
      "after": "Primary PMID:18268013"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "neutral-pH18pS",
      "after": "neutral-pH 18 pS"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "construct,9144199",
      "after": "construct, PMID:9144199"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "(9219694)",
      "after": "(PMID:9219694)"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "all358",
      "after": "all 358"
    },
    {
      "path": "genes/mouse/Bcl2/Bcl2-notes.md",
      "before": "pH7.4",
      "after": "pH 7.4"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "residues51-55",
      "after": "residues 51-55"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "Nodeplacement",
      "after": "Node placement"
    },
    {
      "path": "genes/yeast/KDX1/KDX1-notes.md",
      "before": "EuropePMC500",
      "after": "Europe PMC HTTP 500"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "approximately30%",
      "after": "approximately 30%"
    },
    {
      "path": "genes/SCHPO/pmp20/pmp20-ai-review.yaml",
      "before": "a16:1",
      "after": "a 16:1"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "obligatory1:1:1",
      "after": "obligatory 1:1:1"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "about75%",
      "after": "about 75%"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "approximately2000-fold",
      "after": "approximately 2000-fold"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "requiring1000",
      "after": "requiring 1000"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "at500nm",
      "after": "at 500 nm"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "over15min",
      "after": "over 15 min"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figure8",
      "after": "Figure 8"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figure3",
      "after": "Figure 3"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figure4",
      "after": "Figure 4"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figure4",
      "after": "Figure 4"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figure4",
      "after": "Figure 4"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figures5",
      "after": "Figures 5"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figure3",
      "after": "Figure 3"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Figure6",
      "after": "Figure 6"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-ai-review.yaml",
      "before": "requiring1000",
      "after": "requiring 1000"
    },
    {
      "path": "genes/PYROR/PoMZ_10221/PoMZ_10221-notes.md",
      "before": "HTTP500",
      "after": "HTTP 500"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-ai-review.yaml",
      "before": "(11601843,12756240)",
      "after": "(PMID:11601843, PMID:12756240)"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-ai-review.yaml",
      "before": "(11601843,12756240,16431909)",
      "after": "(PMID:11601843, PMID:12756240, PMID:16431909)"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-ai-review.yaml",
      "before": "misleading:10779357",
      "after": "misleading: PMID:10779357"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "explicit:11171977",
      "after": "explicit: PMID:11171977"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "normalization;11273703",
      "after": "normalization; PMID:11273703"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "conversion;8707841",
      "after": "conversion; PMID:8707841"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "Hsp70;9813017",
      "after": "Hsp70; PMID:9813017"
    },
    {
      "path": "genes/yeast/SSQ1/SSQ1-notes.md",
      "before": "includesSSQ1",
      "after": "includes SSQ1"
    }
  ],
  "digit_sequences_unchanged": true,
  "urls_and_file_references_unchanged": true,
  "gene_files_checked": 32,
  "changed_line_trailing_whitespace_trimmed": 2,
  "baseline_commit": "d849ad9e2c0c4a328344abfa0a424fc3c10c8c69"
}