{
  "pr": 5616,
  "module": "bacterial_aminoacyl_trna_charging",
  "url": "https://github.com/ai4curation/ai-gene-review/pull/5616",
  "merged_at": "2026-10-30T03:27:06Z",
  "merge_commit": "6f56c0addf030cb02af4c8ba7e8dfd470e8762ab",
  "approved_head": "9d96579f4ea3a6293999507858b548aa03020fbe",
  "exact_head_approval": true,
  "scoped_files": 314,
  "all_scoped_blobs_identical": true,
  "deleted_in_head_and_merge": [],
  "module_representatives": 42,
  "member_reviews": [
    {
      "accession": "A0A0S7X265",
      "review_path": "genes/9BACT/A0A0S7X265/A0A0S7X265-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 1,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "A0A0S7X285",
      "review_path": "genes/9BACT/A0A0S7X285/A0A0S7X285-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 1,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "O06491",
      "review_path": "genes/BACSU/gatA/gatA-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 8,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "O06492",
      "review_path": "genes/BACSU/gatC/gatC-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 3,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "O30509",
      "review_path": "genes/BACSU/gatB/gatB-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 10,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "O32038",
      "review_path": "genes/BACSU/aspS/aspS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 12,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "O51603",
      "review_path": "genes/BORBU/lysS/lysS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 9,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "P0A8M0",
      "review_path": "genes/ECOLI/asnS/asnS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 19,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "P22250",
      "review_path": "genes/BACSU/gltX/gltX-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 13,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "P39772",
      "review_path": "genes/BACSU/asnS/asnS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 9,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "P56206",
      "review_path": "genes/THET8/glyQS/glyQS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 16,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q51422",
      "review_path": "genes/PSEAE/aspS/aspS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 12,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88CU1",
      "review_path": "genes/PSEPK/argS/argS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 7,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88DN1",
      "review_path": "genes/PSEPK/leuS/leuS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 10,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88EI8",
      "review_path": "genes/PSEPK/alaS/alaS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 13,
      "pending": 0,
      "undecided": 1
    },
    {
      "accession": "Q88FT2",
      "review_path": "genes/PSEPK/serS/serS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 8,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88IU4",
      "review_path": "genes/PSEPK/cysS/cysS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 9,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88IU5",
      "review_path": "genes/PSEPK/glnS/glnS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 11,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88K22",
      "review_path": "genes/PSEPK/pheT/pheT-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 8,
      "pending": 0,
      "undecided": 1
    },
    {
      "accession": "Q88K23",
      "review_path": "genes/PSEPK/pheS/pheS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 9,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88K27",
      "review_path": "genes/PSEPK/thrS/thrS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 11,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88LF6",
      "review_path": "genes/PSEPK/gltX/gltX-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 11,
      "pending": 0,
      "undecided": 1
    },
    {
      "accession": "Q88MS3",
      "review_path": "genes/PSEPK/lysS/lysS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 12,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88NA1",
      "review_path": "genes/PSEPK/trpS/trpS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 8,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88NJ4",
      "review_path": "genes/PSEPK/aspS/aspS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 10,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88NK2",
      "review_path": "genes/PSEPK/proS/proS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 10,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88NV7",
      "review_path": "genes/PSEPK/metG/metG-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 9,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88P76",
      "review_path": "genes/PSEPK/valS/valS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 10,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88PB8",
      "review_path": "genes/PSEPK/gatC/gatC-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 5,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88PB9",
      "review_path": "genes/PSEPK/gatA/gatA-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 7,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88PC0",
      "review_path": "genes/PSEPK/gatB/gatB-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 8,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88PJ6",
      "review_path": "genes/PSEPK/hisS/hisS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 4,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88Q92",
      "review_path": "genes/PSEPK/ileS/ileS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 12,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88QQ2",
      "review_path": "genes/PSEPK/tyrS/tyrS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 10,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88RR8",
      "review_path": "genes/PSEPK/glyQ/glyQ-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 6,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q88RR9",
      "review_path": "genes/PSEPK/glyS/glyS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 8,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q8DLI5",
      "review_path": "genes/THEVB/gltX/gltX-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 11,
      "pending": 0,
      "undecided": 1
    },
    {
      "accession": "Q9HVT7",
      "review_path": "genes/PSEAE/gatB/gatB-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 10,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q9HVT8",
      "review_path": "genes/PSEAE/gatA/gatA-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 7,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q9HVT9",
      "review_path": "genes/PSEAE/gatC/gatC-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 3,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q9I2U8",
      "review_path": "genes/PSEAE/glnS/glnS-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 13,
      "pending": 0,
      "undecided": 0
    },
    {
      "accession": "Q9XCL6",
      "review_path": "genes/PSEAE/gltX/gltX-ai-review.yaml",
      "status": "COMPLETE",
      "annotation_rows": 13,
      "pending": 0,
      "undecided": 0
    }
  ],
  "unresolved_member_paths": [],
  "module_references": 54,
  "head_checks": [
    {
      "__typename": "CheckRun",
      "completedAt": "2026-10-30T02:57:43Z",
      "conclusion": "SKIPPED",
      "detailsUrl": "https://github.com/ai4curation/ai-gene-review/actions/runs/40994655577/job/123864862216",
      "name": "check-mention",
      "startedAt": "2026-10-30T02:57:44Z",
      "status": "COMPLETED",
      "workflowName": "AI Agent GitHub Mentions"
    },
    {
      "__typename": "CheckRun",
      "completedAt": "2026-10-30T02:39:44Z",
      "conclusion": "SKIPPED",
      "detailsUrl": "https://github.com/ai4curation/ai-gene-review/actions/runs/40992981033/job/123859517300",
      "name": "claude",
      "startedAt": "2026-10-30T02:39:44Z",
      "status": "COMPLETED",
      "workflowName": "Claude Code"
    },
    {
      "__typename": "CheckRun",
      "completedAt": "2026-10-30T02:56:27Z",
      "conclusion": "SUCCESS",
      "detailsUrl": "https://github.com/ai4curation/ai-gene-review/actions/runs/40991991183/job/123856349523",
      "name": "validation (3.12)",
      "startedAt": "2026-10-30T02:29:35Z",
      "status": "COMPLETED",
      "workflowName": "Build and test"
    },
    {
      "__typename": "CheckRun",
      "completedAt": "2026-10-30T02:39:54Z",
      "conclusion": "SUCCESS",
      "detailsUrl": "https://github.com/ai4curation/ai-gene-review/actions/runs/40991991211/job/123856350098",
      "name": "claude-review",
      "startedAt": "2026-10-30T02:29:35Z",
      "status": "COMPLETED",
      "workflowName": "Claude Code Review"
    },
    {
      "__typename": "CheckRun",
      "completedAt": "2026-10-30T02:57:43Z",
      "conclusion": "SKIPPED",
      "detailsUrl": "https://github.com/ai4curation/ai-gene-review/actions/runs/40994655577/job/123864862842",
      "name": "respond-to-mention",
      "startedAt": "2026-10-30T02:57:44Z",
      "status": "COMPLETED",
      "workflowName": "AI Agent GitHub Mentions"
    },
    {
      "__typename": "CheckRun",
      "completedAt": "2026-10-30T02:51:55Z",
      "conclusion": "SUCCESS",
      "detailsUrl": "https://github.com/ai4curation/ai-gene-review/actions/runs/40991991183/job/123856349797",
      "name": "suite (3.12)",
      "startedAt": "2026-10-30T02:29:35Z",
      "status": "COMPLETED",
      "workflowName": "Build and test"
    },
    {
      "__typename": "CheckRun",
      "completedAt": "2026-10-30T02:56:34Z",
      "conclusion": "SUCCESS",
      "detailsUrl": "https://github.com/ai4curation/ai-gene-review/actions/runs/40991991183/job/123864503940",
      "name": "test (3.12)",
      "startedAt": "2026-10-30T02:56:30Z",
      "status": "COMPLETED",
      "workflowName": "Build and test"
    }
  ],
  "scoped_blobs": {
    "genes/9BACT/A0A0S7X265/A0A0S7X265-ai-review.html": "bbf33edd3bb12f82e5af3fd838477210dc703ce3",
    "genes/9BACT/A0A0S7X265/A0A0S7X265-ai-review.yaml": "11036a99f528f065b09e8744c05264847fcc9a4e",
    "genes/9BACT/A0A0S7X265/A0A0S7X265-goa.tsv": "1058e40b1f7d84032565da573bb83169d42ba60d",
    "genes/9BACT/A0A0S7X265/A0A0S7X265-notes.md": "0327a148fef8a610f00e27c0b0bbba5df92616b7",
    "genes/9BACT/A0A0S7X265/A0A0S7X265-uniprot.txt": "a08aac71262df985109f5fe0dba6e2cecc4dbd46",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-ai-review.html": "89590b63c9ae96364e5483c0e0d69477c1ec6928",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-ai-review.yaml": "d748e7523a88303d4f17d250e36394897b23c34c",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-goa.tsv": "1058e40b1f7d84032565da573bb83169d42ba60d",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-notes.md": "eeb765f0b191da86f66c730f167e0286f5e45798",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/A0A0S7X265-current.json": "04e754a5094c97faf1353242ffd9e9843832a264",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/A0A0S7X265-unisave.json": "68377c9917ad662d10ad02c60a8af5da137863f1",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/A0A0S7X285-current.json": "56695439d0609d42131972b517b1d8bc6e9f3f39",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/A0A0S7X285-unisave.json": "5e7820017a2470f536677ac926a683fa762032fe",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/README.md": "67f0deba82c9d39e7be0f943346b82aecb8b9d7d",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/archived-extension-baseline.json": "d9fc4e54ed0eb8c137c01d881a3f4c171d15343b",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/extract_sources.py": "4111e67f81275d27a944167a69d1a8e9f68c1f22",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/identity-verification.json": "41ad7bf0f5222bc099e22ccfc15ccae0cc128a04",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/published-methods.docx": "786a90f9d496a1441284e66b81935b7adc32dfda",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/published-methods.txt": "8f998489466041088ef9800cbf00c9ffaef3d28c",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/supplement-provenance.json": "b97f2dff493eeba962f0f3fb6770eeb11e22c1e5",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/uniparc-KPJ56532.json": "29fd91dfda8eaffb11861542673e651cf7c4900c",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/uniparc-KPJ56533.json": "301b1bb45a8c04959e5146d347903cad321967c2",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-source-analysis/verify_identities.py": "7af17e10610705c40b1822ddd1a1a4f7f6d372ef",
    "genes/9BACT/A0A0S7X285/A0A0S7X285-uniprot.txt": "ae8c82aa2c67583167a336bfd11593c4f9cb44a1",
    "genes/BACSU/asnS/asnS-ai-review.html": "90ee98f9c99ac344023db8ef73983fef84203c3e",
    "genes/BACSU/asnS/asnS-ai-review.yaml": "8758dfc0f72ebe147fac9c077ad7cfd16b310b43",
    "genes/BACSU/asnS/asnS-goa.tsv": "4240a7bd0889c30c19fd424644990fe6f111460e",
    "genes/BACSU/asnS/asnS-notes.md": "92f269f27b9f87589fd26c360b458e69e3234632",
    "genes/BACSU/asnS/asnS-uniprot.txt": "bc6290bdffbd7af324f6726e3c1a939250e00b83",
    "genes/BACSU/aspS/aspS-ai-review.html": "3d596e5f42e6a2f825ba27c1902c3f6de23e8021",
    "genes/BACSU/aspS/aspS-ai-review.yaml": "3278c3c0d5056e91b50abe3b5cb2e5d1f5ae9aa3",
    "genes/BACSU/aspS/aspS-goa.tsv": "6e1dcbb7fe22405271cb4a41b190edcc11bd4a69",
    "genes/BACSU/aspS/aspS-notes.md": "040d7034ef5523ef38695e777e10bd2001c99878",
    "genes/BACSU/aspS/aspS-uniprot.txt": "384727e2544f480520ebcbe7afd0b576390bb811",
    "genes/BACSU/gatA/gatA-ai-review.html": "17a8cf573fc70c14d504f9b329b692e371a5217d",
    "genes/BACSU/gatA/gatA-ai-review.yaml": "f0e48de498d7ed2fc7504974cd16aa5e134bd847",
    "genes/BACSU/gatA/gatA-goa.tsv": "d8c3f771544c121ce069ced69b47c46fbd855f91",
    "genes/BACSU/gatA/gatA-notes.md": "881123339757b315c709a701427dc8857e08d0a4",
    "genes/BACSU/gatA/gatA-uniprot.txt": "2a1f28940849dd98652a170c3bc362f16398b64b",
    "genes/BACSU/gatB/gatB-ai-review.html": "0aee208ee38b2648d89ee2be40d23da6834f5af2",
    "genes/BACSU/gatB/gatB-ai-review.yaml": "ead4a174aebe7dbd7d333ee24f660b2e8f58245f",
    "genes/BACSU/gatB/gatB-goa.tsv": "9cf1d92bd64ddcd0c8ab28b33282d599ec00971b",
    "genes/BACSU/gatB/gatB-notes.md": "d42d06bd9070e8a507dfd2180eafa9012b6e4499",
    "genes/BACSU/gatB/gatB-uniprot.txt": "0622026637093619242472f898bbdea67f09acdd",
    "genes/BACSU/gatC/gatC-ai-review.html": "3edcb5a35832df28ead597c6aa3ad6d58df4804e",
    "genes/BACSU/gatC/gatC-ai-review.yaml": "abb39638d3ea65b72699a19da356533a381b39c6",
    "genes/BACSU/gatC/gatC-goa.tsv": "8252fb120fbd8a36c6ae17c931ffc065e2005cdc",
    "genes/BACSU/gatC/gatC-notes.md": "2ff09bbcb766359acdcf4e9a5f2ce351e9be3fe8",
    "genes/BACSU/gatC/gatC-uniprot.txt": "f189491f78457e18188556f28cf3d00ddbaf0423",
    "genes/BACSU/gltX/gltX-ai-review.html": "8836f69af2f108ee7a4e20387695601274344795",
    "genes/BACSU/gltX/gltX-ai-review.yaml": "007e38ffbaacab6f92642b2fd23aaf0875c2244e",
    "genes/BACSU/gltX/gltX-goa.tsv": "4b877a456e37b7e9f95e8cbaef3a54fe9a5b2a46",
    "genes/BACSU/gltX/gltX-notes.md": "1b115e7378bab6311745d7b7d125821580f721d7",
    "genes/BACSU/gltX/gltX-uniprot.txt": "4e32302a948e4e5aee5935be45e086243ab2fff0",
    "genes/BORBU/lysS/lysS-ai-review.html": "c2cd50913050707e9d83122104b222eadc4c41f9",
    "genes/BORBU/lysS/lysS-ai-review.yaml": "b36ebf9256dfe2ae589a5ce51eec79c17451562c",
    "genes/BORBU/lysS/lysS-goa.tsv": "23a3ae9880ebe983e83fcd81ad6eb2e2b6d0562b",
    "genes/BORBU/lysS/lysS-notes.md": "df1c77419451e4ddd6a45053aee8b251bca63c81",
    "genes/BORBU/lysS/lysS-uniprot.txt": "317342a25533a941e6fabb65b88e1da68fe14666",
    "genes/ECOLI/asnS/asnS-ai-review.html": "46f676d07ba87f7f2d3400ec2834fa442f67bb4e",
    "genes/ECOLI/asnS/asnS-ai-review.yaml": "d99d79ca0c442bd518846c67a89caac9671b2df1",
    "genes/ECOLI/asnS/asnS-goa.tsv": "c415aff71f1e6d83401aa7494aed19c776c342c9",
    "genes/ECOLI/asnS/asnS-notes.md": "17936ad476749487575467bb100eff7d6f86d2cc",
    "genes/ECOLI/asnS/asnS-uniprot.txt": "4ef59d34b1b96659ababf259b7d09333e00ef375",
    "genes/METTP/gatC/gatC-ai-review.html": "54bab92e8ed28d513bab523993ca4e7d5afafca2",
    "genes/METTP/gatC/gatC-ai-review.yaml": "429b033688181a21ea50a9c94e0623e4b092a614",
    "genes/METTP/gatC/gatC-notes.md": "a1633f8233943c308a5caa6a0cc12624cc26830c",
    "genes/METTP/gatC/gatC-source-analysis/retired-proposals-2026-10-29.yaml": "46b3fd478291ded54e4da527c4b4c53d140d8d41",
    "genes/POPTR/ALARS/ALARS-ai-review.html": "566496a8a21a1cb3875b050d90caa0e163ec1941",
    "genes/POPTR/ALARS/ALARS-ai-review.yaml": "53ebae972d1462c61b9ab0d38a0212d4e848857e",
    "genes/POPTR/ALARS/ALARS-notes.md": "eb88aae5bbb75069974a11f3c877b6e282c87dce",
    "genes/POPTR/GATC/GATC-ai-review.html": "493fa249f5ac76b95e5eb74fd98feb445938f18e",
    "genes/POPTR/GATC/GATC-ai-review.yaml": "65711968d2ba64a343d93d654964044f303f0c2a",
    "genes/POPTR/GATC/GATC-notes.md": "fe8cbb5f45dedff2f9bee6f1eb3828a3494e219d",
    "genes/PSEAE/aspS/aspS-ai-review.html": "ef50e762ae69ae44492408fbdaf5ad667e2975d0",
    "genes/PSEAE/aspS/aspS-ai-review.yaml": "e11a8142ea278f56bf2747c3b1691d725178dda3",
    "genes/PSEAE/aspS/aspS-goa.tsv": "89bafeaa069709bb8a8618c4eb9da190de4e2530",
    "genes/PSEAE/aspS/aspS-notes.md": "c0103a7b86e484dec564137eb51ead0e04ffa7d2",
    "genes/PSEAE/aspS/aspS-uniprot.txt": "d566381a00cac30139e71cb9d286f72bf274486d",
    "genes/PSEAE/gatA/gatA-ai-review.html": "632393fcf4ef5142012b9e8456190cb04679c49f",
    "genes/PSEAE/gatA/gatA-ai-review.yaml": "53876adbdb17630cc076f3fa1f809b1f163d853e",
    "genes/PSEAE/gatA/gatA-goa.tsv": "c16275095f09d649fa4a36c78593c59d1fc54b56",
    "genes/PSEAE/gatA/gatA-notes.md": "fe427385bcd480f41e29a7a913964f3bb9adb68f",
    "genes/PSEAE/gatA/gatA-uniprot.txt": "ef16532b5a00292238b72a397376d8127c37966e",
    "genes/PSEAE/gatB/gatB-ai-review.html": "26dcbca5fc11553e33a2b5ac04c7c10392444ca6",
    "genes/PSEAE/gatB/gatB-ai-review.yaml": "a116fb6dd37432e247f6ec2defdd4efaab996e80",
    "genes/PSEAE/gatB/gatB-goa.tsv": "2dcf08bd1181907310ab5e72b07ec08c808b99b8",
    "genes/PSEAE/gatB/gatB-notes.md": "7b24edf7cf26827779c67afab02c02bb98576e32",
    "genes/PSEAE/gatB/gatB-uniprot.txt": "f6778b1f654aa40e3f976f88df760391eed96522",
    "genes/PSEAE/gatC/gatC-ai-review.html": "fe4761285a62ecc8a84f656f883934c631fd6ab2",
    "genes/PSEAE/gatC/gatC-ai-review.yaml": "f3ad9b0bc6dc1e9f8699b698eb6f2ac159f67b10",
    "genes/PSEAE/gatC/gatC-goa.tsv": "888f266add890245f4ee0a66bf439e951ce1519e",
    "genes/PSEAE/gatC/gatC-notes.md": "cb3ba9eaad5cb0865ff79b0efa8b997ed281aa9f",
    "genes/PSEAE/gatC/gatC-uniprot.txt": "18e142d1d6479dab09917724e0216cbc2807f536",
    "genes/PSEAE/glnS/glnS-ai-review.html": "17296c6760b8bbbc8a11a9705f2d39441bde0334",
    "genes/PSEAE/glnS/glnS-ai-review.yaml": "0d003d95789f9fd4b450684f15a8d13b03297f1c",
    "genes/PSEAE/glnS/glnS-goa.tsv": "b509301c2fd17a6d8093eb227c92163d50d17c0a",
    "genes/PSEAE/glnS/glnS-notes.md": "8602d8cf8b34495cbb46f6276ebd723f0b7ce9b9",
    "genes/PSEAE/glnS/glnS-uniprot.txt": "dfda6053b94552151448cd328e2728f4d70e59b4",
    "genes/PSEAE/gltX/gltX-ai-review.html": "87b443b579044ff6a463b053942b5f8c25c4e28e",
    "genes/PSEAE/gltX/gltX-ai-review.yaml": "999c6ef4046de15cc8973a2402fa20e5fb006d06",
    "genes/PSEAE/gltX/gltX-goa.tsv": "bd160efecd2f9114cfca21b0d36f0bf4ccbca0bd",
    "genes/PSEAE/gltX/gltX-notes.md": "09c09c31341ea75987de3f50a51c07d4669a1339",
    "genes/PSEAE/gltX/gltX-uniprot.txt": "ab060862e4090f281b5c0b4f561e3c92b5504809",
    "genes/PSEPK/alaS/alaS-ai-review.html": "540a651fbf6b223fe839a825a1e61cb9a5d3a2cc",
    "genes/PSEPK/alaS/alaS-ai-review.yaml": "d337df5f33887d2cbade7eb756822d8b573d8ddf",
    "genes/PSEPK/alaS/alaS-notes.md": "5711dacb4a2cccdfc63b19f18e9a8c6c1f9a71c1",
    "genes/PSEPK/argS/argS-ai-review.html": "987e2d264db68e50b1a5ebcd6435d585772c458c",
    "genes/PSEPK/argS/argS-ai-review.yaml": "b3d6ce0d01598d50ea9ffec0e9063c28e9b30515",
    "genes/PSEPK/argS/argS-notes.md": "83a8e2bf4bd9f92233521baf74969f59d9ea1e39",
    "genes/PSEPK/aspS/aspS-ai-review.html": "6663bc28347d032b151dc366910d4e51a2f87f69",
    "genes/PSEPK/aspS/aspS-ai-review.yaml": "3d4f071d2eecf80f4c1ef4522fa1d6e60b95d5e0",
    "genes/PSEPK/aspS/aspS-notes.md": "4ea75c63d723685a977baeef03ed8c2e0c75b7df",
    "genes/PSEPK/cysS/cysS-ai-review.html": "1c79d432bf6740c05916cd7650e210d58f7f2aa3",
    "genes/PSEPK/cysS/cysS-ai-review.yaml": "2e2002de0ac8718fa71cd386378d8b55b644c57b",
    "genes/PSEPK/cysS/cysS-notes.md": "52f1b95ac23722e32909759e10046e1cf051aca9",
    "genes/PSEPK/gatA/gatA-ai-review.html": "ff25f78d31378e9409e52322c7f8b4c9f0adde67",
    "genes/PSEPK/gatA/gatA-ai-review.yaml": "06a24ce427472ff22bee82a98d5f66aa340e36dd",
    "genes/PSEPK/gatA/gatA-notes.md": "16f507c7fcb9d090ddfcb6f6448cd10ab8797141",
    "genes/PSEPK/gatB/gatB-ai-review.html": "6c9b0661989b0565f3f7d41d9db53b51356fe13f",
    "genes/PSEPK/gatB/gatB-ai-review.yaml": "d2cf3d752e985b71a922cf4b0005ca102a4a554b",
    "genes/PSEPK/gatB/gatB-notes.md": "05802f359188d645c8403a23a1a7de0d57a50b6e",
    "genes/PSEPK/gatC/gatC-ai-review.html": "553c6dc60025bc0642cd56246e0522efa0c43a8c",
    "genes/PSEPK/gatC/gatC-ai-review.yaml": "14ba9afc45d8ae17743eaf6c38346e51bf370d04",
    "genes/PSEPK/gatC/gatC-notes.md": "4920ec87e0a4364045924560354bd6246f2e97b3",
    "genes/PSEPK/glnS/glnS-ai-review.html": "611a28e241817e2c9232f3a642786f2816e84889",
    "genes/PSEPK/glnS/glnS-ai-review.yaml": "fe4675b128f428ecab51bfa75b2b155ea6991de3",
    "genes/PSEPK/glnS/glnS-notes.md": "97bd1e2628198e6b99c6437462686e804008c40a",
    "genes/PSEPK/gltX/gltX-ai-review.html": "4c1eb07f743115890dd3253b24f7af73034b5c55",
    "genes/PSEPK/gltX/gltX-ai-review.yaml": "d79f979248159f58c56b30e425b0c5332e2f4e02",
    "genes/PSEPK/gltX/gltX-bioinformatics/README.md": "8014c06a9cfb66b65d8131f6167c6feaaae76028",
    "genes/PSEPK/gltX/gltX-bioinformatics/RESULTS.md": "d10c1e8de39cc2643865505d4107beeb0b13188f",
    "genes/PSEPK/gltX/gltX-bioinformatics/data/P04805.fasta": "9c1f36afc99fb058fd93ac4be78df7c00da95b12",
    "genes/PSEPK/gltX/gltX-bioinformatics/data/Q88LF6.fasta": "f423308a7431b97254315900964b1393554075bc",
    "genes/PSEPK/gltX/gltX-bioinformatics/data/Q9XCL6.fasta": "49a7125c21f44e38ea24858d5fac987b50a1ad94",
    "genes/PSEPK/gltX/gltX-bioinformatics/data/input.fasta": "2721a86f6e49e7d7500a5ad2b72513ca05c9ed55",
    "genes/PSEPK/gltX/gltX-bioinformatics/data/provenance.json": "b08f87503a4065f5db7ed3bd33feb1f10e0d040c",
    "genes/PSEPK/gltX/gltX-bioinformatics/justfile": "bca71f4c6f6fc5337bdd279d1ec888733015acd1",
    "genes/PSEPK/gltX/gltX-bioinformatics/map_reference_sites.py": "e982026f56e9f8959aac5508f07c97907bb9f6eb",
    "genes/PSEPK/gltX/gltX-bioinformatics/prepare_inputs.py": "4943a9a32fefd4e01f73e839d73dafed4343ba6a",
    "genes/PSEPK/gltX/gltX-bioinformatics/results/P04805-site-map.tsv": "b10937ca1285590153bafce660c9106f0be13a62",
    "genes/PSEPK/gltX/gltX-bioinformatics/results/Q9XCL6-site-map.tsv": "b970175ea65005e12997c80078ed5eb6ac03e0ae",
    "genes/PSEPK/gltX/gltX-bioinformatics/results/alignment.fasta": "3b193cf73b91cfef265a2e7f6aee2e96a02c0c41",
    "genes/PSEPK/gltX/gltX-notes.md": "bebe476906088b0c018defc9434a8a2973b9a3b1",
    "genes/PSEPK/glyQ/glyQ-ai-review.html": "d41734180219cd9e7cf782bc8a3ab80445354ef3",
    "genes/PSEPK/glyQ/glyQ-ai-review.yaml": "328d002432beed6e0a9b19300f903ac432317ffa",
    "genes/PSEPK/glyQ/glyQ-notes.md": "da907d4cd9c94a5e86385169d569c82220a32ffa",
    "genes/PSEPK/glyS/glyS-ai-review.html": "74b7bdca670567eaa43c87363d715cff306f8586",
    "genes/PSEPK/glyS/glyS-ai-review.yaml": "a496dc54a8172e8774a2eebaa936a4967eab019b",
    "genes/PSEPK/glyS/glyS-notes.md": "903db66dcaf4274983def4fdc60d35a02f5368c1",
    "genes/PSEPK/hisS/hisS-ai-review.html": "ce3abbc89ca5abbb3a42ec804f1a568c2c272a44",
    "genes/PSEPK/hisS/hisS-ai-review.yaml": "e46f7d83e7349f9a490c4e6c79738d454c3dd075",
    "genes/PSEPK/hisS/hisS-notes.md": "060df5428aa67f2158a09ca2def42c1ff4d2bd53",
    "genes/PSEPK/ileS/ileS-ai-review.html": "9744a84b3a62bde97eecab7cd4f4eecd5e247ea4",
    "genes/PSEPK/ileS/ileS-ai-review.yaml": "8dff10a1e6961ee60392b24ba8549cc6000ed30b",
    "genes/PSEPK/ileS/ileS-notes.md": "4b6c07be49cc9b231b230f061a396efbad4015a6",
    "genes/PSEPK/leuS/leuS-ai-review.html": "247433faf9a47cdd25cfabea2eb3a2a9216d8081",
    "genes/PSEPK/leuS/leuS-ai-review.yaml": "a8a9b563058a8254b6190960492ad8faa24f9f08",
    "genes/PSEPK/leuS/leuS-notes.md": "4adb2b851c85ba38276505aa816fa8507f0a42c1",
    "genes/PSEPK/lysS/lysS-ai-review.html": "37954876fbe5287ce3b5f7745c5920710cb2d6fe",
    "genes/PSEPK/lysS/lysS-ai-review.yaml": "05f0155c276553817ea13be3f32581eb2032bffb",
    "genes/PSEPK/lysS/lysS-notes.md": "6f869464843002d3e8f966fedb11a72d13c5d2df",
    "genes/PSEPK/metG/metG-ai-review.html": "4073fd912cc0f2bd95916b4a18c5c11bb4b6944b",
    "genes/PSEPK/metG/metG-ai-review.yaml": "9b7920fe1832d67a7f2772ed18e00ad731097163",
    "genes/PSEPK/metG/metG-notes.md": "207e7d51f487899f85bf6854fa5c892e6359523d",
    "genes/PSEPK/pheS/pheS-ai-review.html": "6d55dc74b12d3070278509568cced724c964afbb",
    "genes/PSEPK/pheS/pheS-ai-review.yaml": "74bab1b81cbb8f804876c2d33b4b1b961d358509",
    "genes/PSEPK/pheS/pheS-notes.md": "debe2a4715d3f50965647142d96ff79c1f2846d1",
    "genes/PSEPK/pheT/pheT-ai-review.html": "250425081f0d3eefa01a520369b8aab6929e7c03",
    "genes/PSEPK/pheT/pheT-ai-review.yaml": "52840947ab12af70bead712e23240aae65662795",
    "genes/PSEPK/pheT/pheT-notes.md": "6fd8ae2e98efb74f0630306809eb4f6ec98a1a8c",
    "genes/PSEPK/proS/proS-ai-review.html": "1eda83d2ac6e52497b747858b775687eae05fe42",
    "genes/PSEPK/proS/proS-ai-review.yaml": "a6652e72f8e957d21722047f095936f8640787f8",
    "genes/PSEPK/proS/proS-notes.md": "df10cbdcba1800192d96d8af177b5a8dacfa6b9a",
    "genes/PSEPK/serS/serS-ai-review.html": "39164a0898419ac10bc8547e3151acdb3d5f39b1",
    "genes/PSEPK/serS/serS-ai-review.yaml": "36bd1fcc369d942f62bf0489a3c2bf0bfb3c5981",
    "genes/PSEPK/serS/serS-notes.md": "64e75803a1ae1a4e631dbb9716ef789fcf8af8fd",
    "genes/PSEPK/thrS/thrS-ai-review.html": "20b53a5c33a7cda1c51f88113e697ddf3502f565",
    "genes/PSEPK/thrS/thrS-ai-review.yaml": "5760195af16c69dd37254401923a2f1671a11af8",
    "genes/PSEPK/thrS/thrS-notes.md": "7c0831d3800768df51851630b1def4b9f79695c6",
    "genes/PSEPK/trpS/trpS-ai-review.html": "59efaf71bde469928895e196590b4c844b33db77",
    "genes/PSEPK/trpS/trpS-ai-review.yaml": "d679a3cab8b995b3c9bc909e90aca4ac8a79a36c",
    "genes/PSEPK/trpS/trpS-notes.md": "a5559f0cc2fd2959297e13df0cd5e55b8222f746",
    "genes/PSEPK/tyrS/tyrS-ai-review.html": "e3ca3083ce4f48aadd4eacd37cbea416f3ecd7f3",
    "genes/PSEPK/tyrS/tyrS-ai-review.yaml": "90f3767b72348764b56541d01ee26a13766dd9d4",
    "genes/PSEPK/tyrS/tyrS-notes.md": "ca34819d2e208e580b7c08a24be85afeef05d3c9",
    "genes/PSEPK/valS/valS-ai-review.html": "41f98cc84a6c8a3544b37078d8df6efb0f214779",
    "genes/PSEPK/valS/valS-ai-review.yaml": "549aaa87d5ccb61352bec26ac81db03370a043bf",
    "genes/PSEPK/valS/valS-notes.md": "7ca92853a9120c13ffbf46a3539ffc18141d062d",
    "genes/THET8/glyQS/glyQS-ai-review.html": "fc09480d8ba044ddb372dcfafeb9e28835d4e056",
    "genes/THET8/glyQS/glyQS-ai-review.yaml": "999077787b30a972fb23ae26270482b9d7cddc59",
    "genes/THET8/glyQS/glyQS-goa.tsv": "0d5032a5c1177fe99c808bbce261043a0fbb10c4",
    "genes/THET8/glyQS/glyQS-notes.md": "17ff5d4c4effe65445e6173fbc3e2340fa5fa9d7",
    "genes/THET8/glyQS/glyQS-uniprot.txt": "8a1dcad8697d142c53091ef8e617a8f4bb308033",
    "genes/THEVB/gltX/gltX-ai-review.html": "9ade2b5b391e3b98769487871e80431fbdf7c664",
    "genes/THEVB/gltX/gltX-ai-review.yaml": "e7a449668ba65d919d70785f46d673f3952cb5ea",
    "genes/THEVB/gltX/gltX-goa.tsv": "fdfda68fe774256b34cffb5dc1f8c4aa851ed1aa",
    "genes/THEVB/gltX/gltX-notes.md": "0f003d0fa21be85e6225f3af1090c825ed784d5c",
    "genes/THEVB/gltX/gltX-uniprot.txt": "8571fa868ac3f8479a791756d92568115953848c",
    "genes/human/AARS1/AARS1-ai-review.html": "5a27b12fed4cd56c82c3034e705e22775cfd0efb",
    "genes/human/AARS1/AARS1-ai-review.yaml": "a27361643b59698f7da41ec5175cc1dfd42e0817",
    "genes/human/AARS1/AARS1-notes.md": "800174c2481d0311f8606aeb50ab80c5789b51d2",
    "history/genes/9BACT/A0A0S7X265/2026-10-26T185156Z-codex-ce9ff5.yaml": "3c2b16de3fb3dc172f85fe45eeff28ab7b9fe4d8",
    "history/genes/9BACT/A0A0S7X265/2026-10-30T014630Z-codex-678e6b.yaml": "b054fe4967c4e1289f5fd2b41e93b17429e7c425",
    "history/genes/9BACT/A0A0S7X285/2026-10-26T185155Z-codex-b1f0e9.yaml": "49bd99f8c6ae0842d63f679db7386ebcc0f280e6",
    "history/genes/BACSU/asnS/2026-10-26T185137Z-codex-183992.yaml": "3dd17886197c092e7d8673576ebb28724f3b4e2a",
    "history/genes/BACSU/aspS/2026-10-26T185139Z-codex-ed4a22.yaml": "f64f6bf9e17432906f1553ee198762f4496f5bab",
    "history/genes/BACSU/gatA/2026-10-26T185140Z-codex-307276.yaml": "8cf5e0702d7d13fab8e1c1a0dd0a0f0c138fcff1",
    "history/genes/BACSU/gatA/2026-10-30T014628Z-codex-2c961a.yaml": "15b33a7afdce2cc49794f26c6df7b1543d03577d",
    "history/genes/BACSU/gatB/2026-10-26T185141Z-codex-2d6b5f.yaml": "497a883d4ffad4f3e5bc99770a82b80228c44fe5",
    "history/genes/BACSU/gatC/2026-10-26T185143Z-codex-bf312f.yaml": "b02c2840d250ac24409093f0a17c4ee1377ab7fa",
    "history/genes/BACSU/gltX/2026-10-26T185144Z-codex-6e2da7.yaml": "de46a3e58871e0aab918426ea455ea23f03fa58d",
    "history/genes/BORBU/lysS/2026-10-26T185145Z-codex-a70347.yaml": "aa227672786f7908a945e3fbc48fa5b76cd56d51",
    "history/genes/ECOLI/asnS/2026-10-26T184037Z-codex-d678bc.yaml": "da029911b0dbbd59e8064c9549d378698af7f85c",
    "history/genes/METTP/gatC/2026-10-30T021650Z-codex-36858f.yaml": "56fe3df3513b1caf80062b1f4bbcea9b9c93d278",
    "history/genes/POPTR/ALARS/2026-10-30T021648Z-codex-317c74.yaml": "71c546b29767090ca122c012db934a068ad1e3b4",
    "history/genes/POPTR/GATC/2026-10-30T021649Z-codex-e09efa.yaml": "85215e79d94abe2df932a48f83442d51543fcaf5",
    "history/genes/PSEAE/aspS/2026-10-26T185146Z-codex-42cf4c.yaml": "df9e2cb6429b6f3f01baa74bc9556074576eaf5d",
    "history/genes/PSEAE/gatA/2026-10-26T185147Z-codex-2b77be.yaml": "72e57b46a6e6bc9d434a337a20fd6ab0f64cd74f",
    "history/genes/PSEAE/gatA/2026-10-30T014629Z-codex-19a8ce.yaml": "1c1648231e5f87c2c0981a105cfb7048279d958c",
    "history/genes/PSEAE/gatB/2026-10-26T185149Z-codex-37e900.yaml": "a1d0016b9c5e1048b51ce1ce3779ab656f213f5b",
    "history/genes/PSEAE/gatC/2026-10-26T185150Z-codex-a0d1f7.yaml": "e3845b744e2f600d87d7192e8d9beee991e72ebf",
    "history/genes/PSEAE/glnS/2026-10-26T185151Z-codex-14ff83.yaml": "98551e75e501723ef5358820c241c13d4ab74125",
    "history/genes/PSEAE/gltX/2026-10-26T185152Z-codex-ea2758.yaml": "c0a4b177d4a0a543260680f2319fdee6fb33eee7",
    "history/genes/PSEPK/alaS/2026-10-26T184548Z-codex-81449a.yaml": "0a524b77d9dd7f468182d4dc144e3f6ac7b01086",
    "history/genes/PSEPK/alaS/2026-10-26T185040Z-codex-a80e2b.yaml": "3be29e0317aed13a6b62d03fb7bf3c90e710ee35",
    "history/genes/PSEPK/alaS/2026-10-26T185405Z-codex-a6c535.yaml": "5ae6cf50589b702354af61a1dea70f155e3a1dee",
    "history/genes/PSEPK/argS/2026-10-26T184020Z-codex-08eb90.yaml": "0e0069f4f38feed666f90587b02f7c03432283ce",
    "history/genes/PSEPK/aspS/2026-10-26T184548Z-codex-ae03b8.yaml": "07556224ebf87bd405f913ef5a625eadea726ad4",
    "history/genes/PSEPK/cysS/2026-10-26T184020Z-codex-7323a3.yaml": "15aaec4568ed5fe254183ac1d1c282defad814d5",
    "history/genes/PSEPK/gatA/2026-10-26T184548Z-codex-511338.yaml": "5b853f3af403f412621d6a3caba7fca88915f261",
    "history/genes/PSEPK/gatA/2026-10-26T185059Z-codex-1eb029.yaml": "16a89112d8f0c7169bfb73baa5a1b6a68189bdad",
    "history/genes/PSEPK/gatA/2026-10-30T014626Z-codex-893942.yaml": "a8065bd2641aa888e3569358f136ee9cab7a1e2d",
    "history/genes/PSEPK/gatB/2026-10-26T184550Z-codex-d3183a.yaml": "7d1b6e3a75c9b1f68c59360d5106f297e0140574",
    "history/genes/PSEPK/gatC/2026-10-26T184551Z-codex-195c89.yaml": "81639882b4cb538b2bda0cdab93d80bb40ee1846",
    "history/genes/PSEPK/glnS/2026-10-26T184551Z-codex-7b818b.yaml": "b5c63ccb88bb451467bbf49b4b3df7cb2f41852c",
    "history/genes/PSEPK/gltX/2026-10-26T184552Z-codex-aa154a.yaml": "0916f6fee95345f012bb41aaa757dbd3cb0cf54f",
    "history/genes/PSEPK/glyQ/2026-10-26T184552Z-codex-ea97f3.yaml": "9b6361f22bd0538ecc77d90d93a21db95783d3b6",
    "history/genes/PSEPK/glyS/2026-10-26T184552Z-codex-86d922.yaml": "23ec735b1f44e83e51bb93b83bfb372c47ea6457",
    "history/genes/PSEPK/hisS/2026-10-26T184022Z-codex-035cf4.yaml": "7a4541ef288eac088619a700f0ca5f5fada3e0b1",
    "history/genes/PSEPK/ileS/2026-10-26T184022Z-codex-988517.yaml": "fe284c959e82c06e90385bf218d7c6fa6631a832",
    "history/genes/PSEPK/leuS/2026-10-26T184024Z-codex-d20fe8.yaml": "175c00da90206b1ac7670bcb1c008830039c9f3b",
    "history/genes/PSEPK/lysS/2026-10-26T184024Z-codex-cbddbd.yaml": "e8ddb555ca2eb30fb2221db10cc2b503c3eed7ae",
    "history/genes/PSEPK/metG/2026-10-26T184027Z-codex-1c2af2.yaml": "d124a5077c491b15c83171b80324cef3a6821fb0",
    "history/genes/PSEPK/pheS/2026-10-26T184554Z-codex-487021.yaml": "0ad40b4a41cf879b75ac88e8524bbcd2736a9967",
    "history/genes/PSEPK/pheT/2026-10-26T184554Z-codex-6f4698.yaml": "713c5bf3ea64d32c79a3e4657ee8cf2e9d23d52f",
    "history/genes/PSEPK/pheT/2026-10-26T185300Z-codex-dbe9a4.yaml": "d94d689e4ee75eda63217918a0a2cba00ea2e1ce",
    "history/genes/PSEPK/proS/2026-10-26T184027Z-codex-121c4d.yaml": "4a4330ac396118ce5517764da94877cb4c5b3325",
    "history/genes/PSEPK/serS/2026-10-26T184029Z-codex-8ce77a.yaml": "7deaa3eed63f7d0cf6d4248294e63577262d395e",
    "history/genes/PSEPK/thrS/2026-10-26T184554Z-codex-cd9162.yaml": "9506b5ce9a64ea8d3e263b20f1bb12f461602d79",
    "history/genes/PSEPK/thrS/2026-10-26T185431Z-codex-6732e3.yaml": "f726d1105c71bf1f3c33235054837bc970b6b533",
    "history/genes/PSEPK/trpS/2026-10-26T184029Z-codex-28237a.yaml": "171d827c0c87b2f8d8b032f19f40e9b2aa4385e0",
    "history/genes/PSEPK/tyrS/2026-10-26T184034Z-codex-a4174a.yaml": "44c1388afbdcb9a735098b4e9a320cd54b62a146",
    "history/genes/PSEPK/valS/2026-10-26T184035Z-codex-70ab3b.yaml": "4f570e538851f25a62c2c466079ec8904bf67008",
    "history/genes/THET8/glyQS/2026-10-26T185153Z-codex-e78e95.yaml": "ce0e6e3ae75ce15f422a154f12d687c4d68b5ae7",
    "history/genes/THEVB/gltX/2026-10-26T184037Z-codex-c76fef.yaml": "2a1eeeb095b3c59687ba0d6084a46149916b63ae",
    "history/genes/human/AARS1/2026-10-30T021646Z-codex-d0fa1a.yaml": "786c55c81d517e9fc2e9400a50dd16f9628f5e02",
    "history/modules/bacterial_aminoacyl_trna_charging/2026-10-26T185236Z-codex-fdfc85.yaml": "6aea6e47cfd967077abfed7ac24bc0dc058ce3a0",
    "history/modules/bacterial_aminoacyl_trna_charging/2026-10-27T153308Z-codex-9dd181.yaml": "d98e5685439c075d818d91c09dc5ce4f8a8f9cbf",
    "history/modules/bacterial_aminoacyl_trna_charging/2026-10-30T014632Z-codex-d39d57.yaml": "4aefb71d26ec85f291810dd05f1c0cf64b38e38f",
    "history/modules/bacterial_aminoacyl_trna_charging/2026-10-30T021651Z-codex-87fb68.yaml": "5373fe84642ef67f5b4d731c3db0f985a2c7fefc",
    "history/other/aminoacyl-go-obsolescence-cache/2026-10-30T014633Z-codex-382ae4.yaml": "abc3cf511f9541739835003ffd7737cd76f7aa3c",
    "history/other/aminoacyl-go-obsolescence-enums/2026-10-30T021652Z-codex-043f58.yaml": "e67f1530bc351550a0c389a7463ccd6ef0e141a8",
    "history/projects/TREEGRAFTER/2026-10-30T014757Z-codex-7cdb89.yaml": "0cf0323090bdc1b6cc81c17d0727b7970506b3c2",
    "modules/bacterial_aminoacyl_trna_charging-analysis/README.md": "794882fde10685dd305a57f5afa567323dea5644",
    "modules/bacterial_aminoacyl_trna_charging-analysis/check_module.py": "548150b904c928f77bb85dd68996e5ecd33ae27f",
    "modules/bacterial_aminoacyl_trna_charging-analysis/check_routes.py": "8bb77c9f77c4fe5c6147e9fede15c26d1110cd67",
    "modules/bacterial_aminoacyl_trna_charging-analysis/family-membership-evidence.json": "79e6eca92c110eabf13bf0e1b5cbaf3baebd04f0",
    "modules/bacterial_aminoacyl_trna_charging-analysis/go-obsolescence.obo": "d2ea89ef2f066859031036230651473dbe5fcd86",
    "modules/bacterial_aminoacyl_trna_charging-analysis/go-snapshot-provenance.json": "a81e43efbbe9eb1719f68236ec38477187717914",
    "modules/bacterial_aminoacyl_trna_charging-analysis/go-term-snapshot.json": "bbc0baf1c3c670cffd7eb236e67a0fb6321ccdd5",
    "modules/bacterial_aminoacyl_trna_charging-analysis/members.json": "19ee77b89717b0961e0fe9bf16c853129254b7ef",
    "modules/bacterial_aminoacyl_trna_charging-analysis/ontology-review.md": "1571b01be9f87178349528682545820a22c28806",
    "modules/bacterial_aminoacyl_trna_charging-analysis/refresh_go_snapshot.py": "2fa3c1b2fc5f34e89ace48b73ac37e978aa8ed0b",
    "modules/bacterial_aminoacyl_trna_charging-analysis/route-results.json": "0bd9b4caddc10fbe8cb2f905419c20b90f71a6ed",
    "modules/bacterial_aminoacyl_trna_charging-analysis/validation-results.json": "632927d068662eee015ec7398e8fecb486476c74",
    "modules/bacterial_aminoacyl_trna_charging-notes.md": "53abb5642631b774bca2acb9b313ea8f586a4696",
    "modules/bacterial_aminoacyl_trna_charging.yaml": "e4f54d861d02f3d6898e49c176162c4f6dbfecb3",
    "publications/PMID_10064708.md": "cfc9258e50d74a6f0eb38c7812b53770fcd2d282",
    "publications/PMID_10529180.md": "213949b0f549aeb61ab6035fa2a889f7244d703b",
    "publications/PMID_11121028.md": "8ecc8301f89fa09a40df7691e315a37b59aee567",
    "publications/PMID_11136973.md": "085a495b6dfc2299dad00a55d2ba6cee468b9408",
    "publications/PMID_1425658.md": "72e3a4ff93b8c6f49b82ae9c95d2a64dcf4169e7",
    "publications/PMID_14729703.md": "64e6b9f249fe90d0f205ca633dbd2021a8c2e218",
    "publications/PMID_15357304.md": "9f8368b978ced370b679004b53151a27fffbd6c5",
    "publications/PMID_1544480.md": "b3805f4b8562759cc98ef01187fd13e383a12e36",
    "publications/PMID_15526031.md": "04f5c4c6c5c4d14bacf37722b8188b0827b49749",
    "publications/PMID_16485259.md": "871eb4eaef27ae503e15d5fd56bd3b0a11b6c44c",
    "publications/PMID_16876193.md": "455a4bb45af5e205954f29597e4170e9058984a1",
    "publications/PMID_2009959.md": "f1d47ffc8720d65ac52473c7bcb036a98b6e854b",
    "publications/PMID_2120226.md": "2651d5886e70e5c3eb311501832bd05bacf58cb8",
    "publications/PMID_21241052.md": "29b00618105a07e005d5906efb63e93acb2062e3",
    "publications/PMID_25548166.md": "8eceddec73fd0fef85bc741adf17d48c98bf5844",
    "publications/PMID_25686371.md": "b1a80eb253a58fc3836829363201f6c9eda56bd2",
    "publications/PMID_26804570.md": "c3556edf0f5be941773168381adc81ff820205a0",
    "publications/PMID_27223819.md": "e17e5fd25d7b9ff3e95b08da4596813e6d84f513",
    "publications/PMID_28487430.md": "8dfeeb7b4dc6c6dc8692e118623a5572bcb798fa",
    "publications/PMID_33072044.md": "bbbea21ceb84fd5d0d2f0ed27880df0bcd7798cc",
    "publications/PMID_334719.md": "d053ca5a809cdbfcbd41e8691cf2764cc90ee9a5",
    "publications/PMID_34225495.md": "252af4a82ef79f632f8a36baa50173e255ab2e8b",
    "publications/PMID_34390350.md": "79cc0b4eb91d3d67c05605296faf454669ed31d3",
    "publications/PMID_35047015.md": "6a3aa12f9b909fa155e11358447d344115f7427f",
    "publications/PMID_38391119.md": "2b77acf5a317be7877982f6930e81b650aab133a",
    "publications/PMID_39154912.md": "0dd407eeea7723ed2340f5e298d6cc10cdbe019d",
    "publications/PMID_6264314.md": "344a7e1f2693e1b78d7eb0c0c954f024c9c330fb",
    "publications/PMID_7556056.md": "be7ca3fc36876db72093ad528b5e7910b0958991",
    "publications/PMID_7797500.md": "152774ab81439dff7b4b968b1bc6a4a2f3f2284b",
    "publications/PMID_8218204.md": "b661a1ad20136c56b0ddc8c6b6e7f6f64190dcbc",
    "publications/PMID_8760912.md": "91af3588af0edb9e56130b8e43a90c4eb8e7a518",
    "publications/PMID_8944770.md": "9e124efdf1caebfa22bd50193d7e9c24e10fa2e4",
    "publications/PMID_9342321.md": "964f6d854cdfdbd0871db82f108e5da92a2616b6",
    "publications/PMID_9405621.md": "7c07d882c1a43f4c015c633e41372daa60fc8467",
    "publications/PMID_9490048.md": "8f4511e25fbd4fc1a88582e0e661b943cbb884b9",
    "publications/PMID_9789001.md": "d6e544a549e962762752c68533eeabbfcf86eb7f"
  },
  "proof_limit": "Verifies actual merged content against the approved head and member review state; original seed/raw baselines are not reconstructed by this retrospective proof."
}
