# Generated by rca_source_catalog.py -- do not edit; curate rca_reference_classes.yaml
- reference: GO_REF:0000123
  rows: 4133
  genes: 537
  title: YeastPathways to GO-CAM conversion
  year: ''
  analysis_class: pathway_or_metabolic_model
  class_source: curated
  class_note: SGD pathway GO-CAMs exported to GAF; WITH/FROM = SGD_PWY:*. A curated pathway model is not a computational analysis
    of large-scale data; IC or TAS-like pathway evidence would describe it better than RCA. Treated as a quirk, not studied
    here.
  assigned_by:
    SGD: 4133
  taxa:
    '559292': 4133
  aspects:
    F: 1546
    C: 1319
    P: 1268
  negated_rows: 0
  annotation_years:
    '2023': 3267
    '2024': 185
    '2026': 681
  top_terms:
    GO:0005829 cytosol: 1271
    GO:0043101 purine-containing compound salvage: 48
    GO:0008654 phospholipid biosynthetic process: 46
    GO:0009165 nucleotide biosynthetic process: 41
    GO:0006696 ergosterol biosynthetic process: 41
- reference: PMID:20660476
  rows: 1039
  genes: 1031
  title: The Trypanosoma brucei MitoCarta and its regulation and splicing pattern during development.
  year: '2010'
  analysis_class: proteome_scale_prediction
  class_source: curated
  class_note: SVM classifier for mitochondrial localization (T. brucei MitoCarta); RNA-seq in the same paper measures expression,
    not location. All 1,039 rows are CC mitochondrion.
  assigned_by:
    GeneDB: 1039
  taxa:
    '185431': 1001
    '5691': 27
    '5702': 9
    '31286': 1
    '5664': 1
  aspects:
    C: 1039
  negated_rows: 0
  annotation_years:
    '2014': 1039
  top_terms:
    GO:0005739 mitochondrion: 1039
- reference: PMID:30358795
  rows: 580
  genes: 580
  title: The cellular economy of the Saccharomyces cerevisiae zinc proteome.
  year: '2018'
  analysis_class: proteome_scale_prediction
  class_source: curated
  class_note: Zinc proteome "identified using a bioinformatics analysis that combined global domain searches with local motif
    searches"; mass spectrometry in the same paper measured abundance only. The GO term (zinc ion binding) comes from the
    prediction.
  assigned_by:
    SGD: 580
  taxa:
    '559292': 580
  aspects:
    F: 580
  negated_rows: 0
  annotation_years:
    '2022': 580
  top_terms:
    GO:0008270 zinc ion binding: 580
- reference: PMID:21166475
  rows: 436
  genes: 427
  title: Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.
  year: '2011'
  analysis_class: proteomics
  class_source: curated
  class_note: LC-MS/MS of the Arabidopsis cytosolic fraction. All 436 GOA rows are NOT|located_in cytosol, i.e. assertions
    about proteins *outside* the robust set.
  assigned_by:
    TAIR: 436
  taxa:
    '3702': 436
  aspects:
    C: 436
  negated_rows: 436
  annotation_years:
    '2011': 436
  top_terms:
    GO:0005829 cytosol: 436
- reference: PMID:11738814
  rows: 275
  genes: 275
  title: Deciphering apicoplast targeting signals--feature extraction from nuclear-encoded precursors of Plasmodium falciparum
    apicoplast proteins.
  year: '2001'
  analysis_class: proteome_scale_prediction
  class_source: curated
  class_note: PATS apicoplast-targeting predictor (neural network on sequence features).
  assigned_by:
    GeneDB: 275
  taxa:
    '36329': 275
  aspects:
    C: 275
  negated_rows: 0
  annotation_years:
    '2009': 2
    '2015': 273
  top_terms:
    GO:0020011 apicoplast: 275
- reference: PMID:22430844
  rows: 191
  genes: 174
  title: Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved
    in plant cell wall biosynthesis.
  year: '2012'
  analysis_class: proteomics
  class_source: curated
  class_note: Arabidopsis Golgi proteomics; the paper reports ~19% of identified proteins as likely contaminants. All 191
    GOA rows are NOT|located_in Golgi apparatus.
  assigned_by:
    TAIR: 191
  taxa:
    '3702': 191
  aspects:
    C: 191
  negated_rows: 191
  annotation_years:
    '2012': 191
  top_terms:
    GO:0005794 Golgi apparatus: 191
- reference: PMID:25037231
  rows: 150
  genes: 91
  title: Extracellular matrix signatures of human primary metastatic colon cancers and their metastases to liver.
  year: '2014'
  analysis_class: proteomics
  class_source: curated
  class_note: ECM-enrichment proteomics of colon cancer and liver metastases (BHF-UCL matrisome set).
  assigned_by:
    BHF-UCL: 150
  taxa:
    '9606': 150
  aspects:
    F: 150
  negated_rows: 0
  annotation_years:
    '2018': 150
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 71
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 52
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 19
    GO:0030023 extracellular matrix constituent conferring elasticity: 8
- reference: PMID:27510400
  rows: 119
  genes: 119
  title: 'Membranome: a database for proteome-wide analysis of single-pass membrane proteins.'
  year: '2017'
  analysis_class: proteome_scale_prediction
  class_source: curated
  class_note: Membranome database of computationally modelled single-pass TM proteins; title rule mis-calls it proteomics.
    119 rows of CC plasma membrane (E. coli).
  assigned_by:
    EcoCyc: 119
  taxa:
    '83333': 119
  aspects:
    C: 119
  negated_rows: 0
  annotation_years:
    '2016': 119
  top_terms:
    GO:0005886 plasma membrane: 119
- reference: PMID:22159717
  rows: 105
  genes: 105
  title: 'The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular
    matrices.'
  year: '2012'
  analysis_class: proteomics
  class_source: curated
  class_note: 'Matrisome paper: proteomics of murine ECM *and* the in-silico matrisome definition whose categories the BHF-UCL
    term mapping follows (see rca_matrisome_crosswalk.py).'
  assigned_by:
    BHF-UCL: 105
  taxa:
    '10090': 105
  aspects:
    F: 105
  negated_rows: 0
  annotation_years:
    '2018': 105
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 60
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 30
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 9
    GO:0030023 extracellular matrix constituent conferring elasticity: 6
- reference: PMID:28071719
  rows: 96
  genes: 96
  title: Quantitative proteomic profiling of the extracellular matrix of pancreatic islets during the angiogenic switch and
    insulinoma progression.
  year: '2017'
  analysis_class: proteomics
  class_source: curated
  class_note: Quantitative ECM proteomics of pancreatic islets (mouse).
  assigned_by:
    BHF-UCL: 96
  taxa:
    '10090': 96
  aspects:
    F: 96
  negated_rows: 0
  annotation_years:
    '2018': 94
    '2019': 2
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 51
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 32
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 9
    GO:0030023 extracellular matrix constituent conferring elasticity: 4
- reference: GO_REF:0000028
  rows: 90
  genes: 90
  title: ''
  year: ''
  analysis_class: unresolved
  class_source: curated
  class_note: PAMGO_MGG (Magnaporthe) GO_REF; title not resolved; mostly broad BP terms.
  assigned_by:
    PAMGO_MGG: 90
  taxa:
    '242507': 90
  aspects:
    P: 84
    F: 5
    C: 1
  negated_rows: 0
  annotation_years:
    '2008': 90
  top_terms:
    GO:0005975 carbohydrate metabolic process: 20
    GO:0007165 signal transduction: 14
    GO:0006412 translation: 14
    GO:0006508 proteolysis: 7
    GO:0006355 regulation of DNA-templated transcription: 6
- reference: PMID:28675934
  rows: 84
  genes: 84
  title: Characterization of the Extracellular Matrix of Normal and Diseased Tissues Using Proteomics.
  year: '2017'
  analysis_class: proteomics
  class_source: curated
  class_note: ECM proteomics protocol paper (normal and diseased human tissues).
  assigned_by:
    BHF-UCL: 84
  taxa:
    '9606': 84
  aspects:
    F: 84
  negated_rows: 0
  annotation_years:
    '2018': 84
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 41
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 31
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 8
    GO:0030023 extracellular matrix constituent conferring elasticity: 4
- reference: PMID:21761556
  rows: 70
  genes: 35
  title: Proteomic analysis of larval integument, trachea and adult scale from the silkworm, Bombyx mori.
  year: '2011'
  analysis_class: proteomics
  class_source: curated
  class_note: Bombyx mori integument/trachea/scale LC-MS/MS; FlyBase-assigned rows on silkworm proteins assert structural
    constituent of chitin-based cuticle plus the cuticle CC.
  assigned_by:
    FlyBase: 70
  taxa:
    '7091': 70
  aspects:
    F: 35
    C: 35
  negated_rows: 0
  annotation_years:
    '2019': 70
  top_terms:
    GO:0005214 structural constituent of chitin-based cuticle: 35
    GO:0062129 chitin-based extracellular matrix: 35
- reference: PMID:26991453
  rows: 64
  genes: 64
  title: A Protein Complex Map of Trypanosoma brucei.
  year: '2016'
  analysis_class: interactomics
  class_source: curated
  class_note: Co-fractionation MS protein complex map of T. brucei; rows assert mitochondrial mRNA editing complex.
  assigned_by:
    GeneDB: 64
  taxa:
    '185431': 50
    '5691': 12
    '5702': 2
  aspects:
    C: 64
  negated_rows: 0
  annotation_years:
    '2016': 64
  top_terms:
    GO:0031019 mitochondrial mRNA editing complex: 64
- reference: PMID:19834910
  rows: 61
  genes: 61
  title: Protein composition of Trypanosoma brucei mitochondrial membranes.
  year: '2009'
  analysis_class: proteomics
  class_source: curated
  class_note: LC-MS/MS of T. brucei mitochondrial membrane fractions; subset validated by tagging.
  assigned_by:
    GeneDB: 61
  taxa:
    '185431': 57
    '5702': 2
    '5691': 1
    '5664': 1
  aspects:
    C: 61
  negated_rows: 0
  annotation_years:
    '2009': 61
  top_terms:
    GO:0005743 mitochondrial inner membrane: 47
    GO:0031966 mitochondrial membrane: 14
- reference: PMID:20551380
  rows: 59
  genes: 59
  title: Proteomics characterization of extracellular space components in the human aorta.
  year: '2010'
  analysis_class: proteomics
  class_source: curated
  class_note: Human aorta ECM proteomics.
  assigned_by:
    BHF-UCL: 59
  taxa:
    '9606': 59
  aspects:
    F: 59
  negated_rows: 0
  annotation_years:
    '2018': 59
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 32
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 14
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 11
    GO:0030023 extracellular matrix constituent conferring elasticity: 2
- reference: PMID:12819136
  rows: 57
  genes: 33
  title: Comparative analysis of apoptosis and inflammation genes of mice and humans.
  year: '2003'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: Mouse/human domain-family comparison of apoptosis genes (orthology inference).
  assigned_by:
    MGI: 57
  taxa:
    '10090': 57
  aspects:
    P: 47
    F: 10
  negated_rows: 0
  annotation_years:
    '2005': 46
    '2008': 8
    '2011': 3
  top_terms:
    GO:0042981 regulation of apoptotic process: 16
    GO:0006915 apoptotic process: 14
    GO:0006508 proteolysis: 8
    GO:0008233 peptidase activity: 8
    GO:0006952 defense response: 3
- reference: PMID:27559042
  rows: 55
  genes: 55
  title: Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in Human Atrial Fibrillation.
  year: '2016'
  analysis_class: proteomics
  class_source: curated
  class_note: Glycoproteomics of human atrial ECM.
  assigned_by:
    BHF-UCL: 55
  taxa:
    '9606': 55
  aspects:
    F: 55
  negated_rows: 0
  annotation_years:
    '2018': 55
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 26
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 17
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 10
    GO:0030023 extracellular matrix constituent conferring elasticity: 2
- reference: PMID:28327460
  rows: 54
  genes: 54
  title: Comprehensive proteomic characterization of stem cell-derived extracellular matrices.
  year: '2017'
  analysis_class: proteomics
  class_source: curated
  class_note: Proteomics of stem-cell-derived ECM.
  assigned_by:
    BHF-UCL: 54
  taxa:
    '9606': 54
  aspects:
    F: 54
  negated_rows: 0
  annotation_years:
    '2018': 54
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 29
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 16
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 5
    GO:0030023 extracellular matrix constituent conferring elasticity: 4
- reference: PMID:15718104
  rows: 41
  genes: 15
  title: Trace amine-associated receptors form structurally and functionally distinct subfamilies of novel G protein-coupled
    receptors.
  year: '2005'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: TAAR receptor family phylogeny across species.
  assigned_by:
    MGI: 41
  taxa:
    '10090': 41
  aspects:
    P: 14
    C: 14
    F: 13
  negated_rows: 0
  annotation_years:
    '2005': 41
  top_terms:
    GO:0007186 G protein-coupled receptor signaling pathway: 14
    GO:0016020 membrane: 14
    GO:0008227 G protein-coupled amine receptor activity: 13
- reference: PMID:17107762
  rows: 40
  genes: 8
  title: Molecular characterization and expression analysis of nine cotton GhEF1A genes encoding translation elongation factor
    1A.
  year: '2007'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Nine cotton EF1A cDNAs, sequence + qRT-PCR.
  assigned_by:
    AgBase: 40
  taxa:
    '3635': 40
  aspects:
    F: 32
    P: 8
  negated_rows: 0
  annotation_years:
    '2010': 25
    '2011': 15
  top_terms:
    GO:0003746 translation elongation factor activity: 8
    GO:0003924 GTPase activity: 8
    GO:0005525 GTP binding: 8
    GO:0019001 guanyl nucleotide binding: 8
    GO:0006414 translational elongation: 8
- reference: PMID:17919451
  rows: 33
  genes: 11
  title: Unraveling the components of protein translocation pathway in human malaria parasite Plasmodium falciparum.
  year: '2007'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: Bioinformatic inventory of P. falciparum translocation machinery (review).
  assigned_by:
    GeneDB: 33
  taxa:
    '36329': 33
  aspects:
    C: 16
    F: 12
    P: 5
  negated_rows: 0
  annotation_years:
    '2009': 33
  top_terms:
    GO:0005789 endoplasmic reticulum membrane: 6
    GO:0005515 protein binding: 5
    GO:0005784 Sec61 translocon complex: 5
    GO:0043022 ribosome binding: 3
    GO:0006614 SRP-dependent cotranslational protein targeting to membrane: 3
- reference: PMID:27068509
  rows: 33
  genes: 33
  title: 'Extracellular matrix remodelling in response to venous hypertension: proteomics of human varicose veins.'
  year: '2016'
  analysis_class: proteomics
  class_source: curated
  class_note: Varicose vein ECM proteomics.
  assigned_by:
    BHF-UCL: 33
  taxa:
    '9606': 33
  aspects:
    F: 33
  negated_rows: 0
  annotation_years:
    '2018': 33
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 22
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 6
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 4
    GO:0030023 extracellular matrix constituent conferring elasticity: 1
- reference: PMID:22261194
  rows: 30
  genes: 30
  title: Proteomics analysis of cardiac extracellular matrix remodeling in a porcine model of ischemia/reperfusion injury.
  year: '2012'
  analysis_class: proteomics
  class_source: curated
  class_note: Porcine cardiac ECM proteomics.
  assigned_by:
    BHF-UCL: 30
  taxa:
    '9823': 30
  aspects:
    F: 30
  negated_rows: 0
  annotation_years:
    '2018': 26
    '2019': 2
    '2025': 2
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 14
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 8
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 6
    GO:0030023 extracellular matrix constituent conferring elasticity: 2
- reference: PMID:30715439
  rows: 28
  genes: 14
  title: The SCOOP12 peptide regulates defense response and root elongation in Arabidopsis thaliana.
  year: '2019'
  analysis_class: single_gene_study
  class_source: curated
  class_note: SCOOP12 peptide family; in-silico family identification plus one characterised member.
  assigned_by:
    TAIR: 28
  taxa:
    '3702': 28
  aspects:
    C: 28
  negated_rows: 0
  annotation_years:
    '2021': 28
  top_terms:
    GO:0005576 extracellular region: 14
    GO:0005783 endoplasmic reticulum: 14
- reference: PMID:21725637
  rows: 27
  genes: 3
  title: Characterization of PROFILIN genes from allotetraploid (Gossypium hirsutum) cotton and its diploid progenitors and
    expression analysis in cotton genotypes differing in fiber characteristics.
  year: '2012'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Cotton profilin genes.
  assigned_by:
    AgBase: 27
  taxa:
    '3635': 9
    '29730': 9
    '29729': 9
  aspects:
    P: 21
    F: 6
  negated_rows: 0
  annotation_years:
    '2012': 27
  top_terms:
    GO:0003779 actin binding: 3
    GO:0005543 phospholipid binding: 3
    GO:0009408 response to heat: 3
    GO:0009416 response to light stimulus: 3
    GO:0009611 response to wounding: 3
- reference: PMID:17363967
  rows: 24
  genes: 12
  title: A fatty-acid synthesis mechanism specialized for parasitism.
  year: '2007'
  analysis_class: single_gene_study
  class_source: curated
  class_note: T. brucei elongase fatty-acid synthesis (review of a pathway).
  assigned_by:
    GeneDB: 24
  taxa:
    '5664': 24
  aspects:
    P: 12
    F: 12
  negated_rows: 0
  annotation_years:
    '2009': 24
  top_terms:
    GO:0006633 fatty acid biosynthetic process: 12
    GO:0009922 fatty acid elongase activity: 12
- reference: PMID:23979707
  rows: 22
  genes: 22
  title: SILAC-based proteomics of human primary endothelial cell morphogenesis unveils tumor angiogenic markers.
  year: '2013'
  analysis_class: proteomics
  class_source: curated
  class_note: SILAC proteomics of endothelial cell morphogenesis incl. secreted ECM.
  assigned_by:
    BHF-UCL: 22
  taxa:
    '9606': 22
  aspects:
    F: 22
  negated_rows: 0
  annotation_years:
    '2018': 22
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 14
    GO:0030020 extracellular matrix structural constituent conferring tensile strength: 5
    GO:0030021 extracellular matrix structural constituent conferring compression resistance: 2
    GO:0030023 extracellular matrix constituent conferring elasticity: 1
- reference: PMID:18364711
  rows: 20
  genes: 16
  title: Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major.
  year: '2008'
  analysis_class: pathway_or_metabolic_model
  class_source: curated
  class_note: Leishmania major metabolic network reconstruction.
  assigned_by:
    GeneDB: 20
  taxa:
    '5664': 19
    '185431': 1
  aspects:
    C: 16
    F: 4
  negated_rows: 0
  annotation_years:
    '2010': 20
  top_terms:
    GO:0005829 cytosol: 8
    GO:0005739 mitochondrion: 4
    GO:0005783 endoplasmic reticulum: 3
    GO:0008887 glycerate kinase activity: 1
    GO:0042392 sphingosine-1-phosphate phosphatase activity: 1
- reference: PMID:19103232
  rows: 17
  genes: 7
  title: 'Plasmodium falciparum secretory pathway: characterization of PfStx1, a plasma membrane Qa-SNARE.'
  year: '2009'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: P. falciparum Qa-SNARE family; locations predicted from alignments, one verified.
  assigned_by:
    GeneDB: 17
  taxa:
    '36329': 17
  aspects:
    F: 9
    C: 6
    P: 2
  negated_rows: 0
  annotation_years:
    '2009': 17
  top_terms:
    GO:0005484 helical-bundle zippering fusogenic activity: 7
    GO:0005515 protein binding: 2
    GO:0016192 vesicle-mediated transport: 2
    GO:0005886 plasma membrane: 2
    GO:0005783 endoplasmic reticulum: 1
- reference: PMID:9593292
  rows: 17
  genes: 11
  title: The Escherichia coli ATP-binding cassette (ABC) proteins.
  year: '1998'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: E. coli ABC protein repertoire from the genome sequence.
  assigned_by:
    EcoCyc: 17
  taxa:
    '83333': 17
  aspects:
    C: 14
    P: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2014': 2
    '2016': 15
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 8
    GO:0005886 plasma membrane: 4
    GO:0055085 transmembrane transport: 2
    GO:0030288 outer membrane-bounded periplasmic space: 2
    GO:0015399 primary active transmembrane transporter activity: 1
- reference: PMID:15919996
  rows: 16
  genes: 16
  title: Global topology analysis of the Escherichia coli inner membrane proteome.
  year: '2005'
  analysis_class: other_omics
  class_source: curated
  class_note: E. coli inner-membrane proteome topology from PhoA/GFP C-terminal fusions of 601 proteins (large-scale experimental
    reporter screen) constraining a predictor.
  assigned_by:
    EcoCyc: 16
  taxa:
    '83333': 16
  aspects:
    C: 16
  negated_rows: 0
  annotation_years:
    '2014': 1
    '2017': 3
    '2018': 3
    '2019': 8
    '2021': 1
  top_terms:
    GO:0005886 plasma membrane: 16
- reference: PMID:29514851
  rows: 15
  genes: 5
  title: Transmembrane redox control and proteolysis of PdeC, a novel type of c-di-GMP phosphodiesterase.
  year: '2018'
  analysis_class: single_gene_study
  class_source: curated
  class_note: PdeC / CSS-domain phosphodiesterases.
  assigned_by:
    EcoCyc: 15
  taxa:
    '83333': 15
  aspects:
    C: 15
  negated_rows: 0
  annotation_years:
    '2018': 15
  top_terms:
    GO:0005886 plasma membrane: 5
    GO:0030288 outer membrane-bounded periplasmic space: 5
    GO:0005829 cytosol: 4
    GO:0005737 cytoplasm: 1
- reference: DOI:10.1016/j.mbplus.2018.11.001
  rows: 14
  genes: 7
  title: The in-silico characterization of the Caenorhabditis elegans matrisome and proposal of a novel collagen classification
  year: ''
  analysis_class: proteome_scale_prediction
  class_source: curated
  class_note: In-silico C. elegans matrisome (title via Crossref); WB rows include ECM structural constituent.
  assigned_by:
    WB: 14
  taxa:
    '6239': 14
  aspects:
    F: 6
    C: 6
    P: 2
  negated_rows: 0
  annotation_years:
    '2019': 14
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 6
    GO:0031012 extracellular matrix: 6
    GO:0030198 extracellular matrix organization: 2
- reference: PMID:19585695
  rows: 13
  genes: 7
  title: Comprehensive genomic analysis of cell wall genes in Aspergillus nidulans.
  year: '2009'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: Aspergillus nidulans cell-wall gene inventory.
  assigned_by:
    AspGD: 13
  taxa:
    '227321': 13
  aspects:
    P: 7
    F: 6
  negated_rows: 0
  annotation_years:
    '2010': 13
  top_terms:
    GO:0044042 glucan metabolic process: 5
    GO:0004338 glucan exo-1,3-beta-glucosidase activity: 5
    GO:0070610 regulation of fungal-type cell wall (1->3)-alpha-glucan biosynthetic process: 2
    GO:0003924 GTPase activity: 1
- reference: PMID:7536291
  rows: 13
  genes: 4
  title: The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent
    expression.
  year: '1994'
  analysis_class: single_gene_study
  class_source: curated
  class_note: dpp operon sequence and expression.
  assigned_by:
    EcoCyc: 13
  taxa:
    '83333': 13
  aspects:
    C: 5
    F: 4
    P: 4
  negated_rows: 0
  annotation_years:
    '2016': 12
    '2023': 1
  top_terms:
    GO:0071916 dipeptide transmembrane transporter activity: 4
    GO:0035442 dipeptide transmembrane transport: 4
    GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing: 4
    GO:0005886 plasma membrane: 1
- reference: PMID:15064375
  rows: 12
  genes: 4
  title: Molecular characterization of cytokinin-responsive histidine kinases in maize. Differential ligand preferences and
    response to cis-zeatin.
  year: '2004'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Maize cytokinin receptor histidine kinases.
  assigned_by:
    AgBase: 12
  taxa:
    '4577': 12
  aspects:
    F: 8
    C: 4
  negated_rows: 0
  annotation_years:
    '2009': 12
  top_terms:
    GO:0004673 protein histidine kinase activity: 4
    GO:0038023 signaling receptor activity: 4
    GO:0016020 membrane: 4
- reference: PMID:21136929
  rows: 11
  genes: 11
  title: Food vacuole proteome of the malarial parasite Plasmodium falciparum.
  year: '2008'
  analysis_class: proteomics
  class_source: curated
  class_note: P. falciparum food vacuole proteome.
  assigned_by:
    GeneDB: 11
  taxa:
    '36329': 11
  aspects:
    C: 11
  negated_rows: 0
  annotation_years:
    '2013': 11
  top_terms:
    GO:0020020 food vacuole: 11
- reference: PMID:17005920
  rows: 9
  genes: 9
  title: Duplicate maize 13-lipoxygenase genes are differentially regulated by circadian rhythm, cold stress, wounding, pathogen
    infection, and hormonal treatments.
  year: '2006'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Maize 13-lipoxygenases.
  assigned_by:
    AgBase: 9
  taxa:
    '4577': 4
    '4113': 2
    '49451': 2
    '4081': 1
  aspects:
    C: 7
    F: 2
  negated_rows: 0
  annotation_years:
    '2009': 9
  top_terms:
    GO:0009507 chloroplast: 5
    GO:0005506 iron ion binding: 2
    GO:0005737 cytoplasm: 2
- reference: PMID:21029107
  rows: 9
  genes: 9
  title: Cotton BCP genes encoding putative blue copper-binding proteins are functionally expressed in fiber development and
    involved in response to high-salinity and heavy metal stresses.
  year: '2011'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Cotton blue copper-binding proteins.
  assigned_by:
    AgBase: 9
  taxa:
    '3635': 9
  aspects:
    F: 9
  negated_rows: 0
  annotation_years:
    '2012': 9
  top_terms:
    GO:0005507 copper ion binding: 9
- reference: PMID:17943315
  rows: 8
  genes: 4
  title: Evidence for alternative splicing of MADS-box transcripts in developing cotton fibre cells.
  year: '2008'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Cotton MADS-box transcripts.
  assigned_by:
    AgBase: 8
  taxa:
    '3635': 8
  aspects:
    F: 8
  negated_rows: 0
  annotation_years:
    '2012': 8
  top_terms:
    GO:0003677 DNA binding: 4
    GO:0046983 protein dimerization activity: 4
- reference: PMID:9387241
  rows: 8
  genes: 8
  title: A 12-cistron Escherichia coli operon (hyf) encoding a putative proton-translocating formate hydrogenlyase system.
  year: '1997'
  analysis_class: single_gene_study
  class_source: curated
  class_note: E. coli hyf operon sequence.
  assigned_by:
    EcoCyc: 8
  taxa:
    '83333': 8
  aspects:
    C: 8
  negated_rows: 0
  annotation_years:
    '2019': 8
  top_terms:
    GO:0044569 [Ni-Fe] hydrogenase complex: 8
- reference: PMID:14702297
  rows: 8
  genes: 4
  title: 'Osmoregulatory systems of Escherichia coli: identification of betaine-carnitine-choline transporter family member
    BetU and distributions of betU and trkG among pathogenic and nonpathogenic isolates.'
  year: '2004'
  analysis_class: single_gene_study
  class_source: curated
  class_note: E. coli BetU and osmoregulatory transporters.
  assigned_by:
    EcoCyc: 8
  taxa:
    '83333': 8
  aspects:
    C: 6
    F: 2
  negated_rows: 0
  annotation_years:
    '2015': 8
  top_terms:
    GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing: 3
    GO:0005886 plasma membrane: 2
    GO:0005524 ATP binding: 1
    GO:0031459 ABC-type glycine betaine transporter activity: 1
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:12649499
  rows: 8
  genes: 8
  title: Identification of novel components of Trypanosoma brucei editosomes.
  year: '2003'
  analysis_class: interactomics
  class_source: curated
  class_note: Purification and MS identification of T. brucei editosome components.
  assigned_by:
    GeneDB: 8
  taxa:
    '185431': 4
    '5691': 4
  aspects:
    F: 6
    C: 2
  negated_rows: 0
  annotation_years:
    '2009': 6
    '2022': 2
  top_terms:
    GO:0045293 mRNA editing complex: 2
    GO:0004525 ribonuclease III activity: 2
    GO:0004518 nuclease activity: 2
    GO:0003723 RNA binding: 2
- reference: PMID:9529885
  rows: 7
  genes: 5
  title: Major facilitator superfamily.
  year: '1998'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: Major facilitator superfamily phylogeny.
  assigned_by:
    EcoCyc: 7
  taxa:
    '83333': 7
  aspects:
    F: 3
    C: 2
    P: 2
  negated_rows: 0
  annotation_years:
    '2010': 4
    '2011': 1
    '2019': 2
  top_terms:
    GO:0015296 monoatomic anion:monoatomic cation symporter activity: 2
    GO:0055085 transmembrane transport: 2
    GO:0005886 plasma membrane: 1
    GO:0016020 membrane: 1
    GO:0022857 transmembrane transporter activity: 1
- reference: PMID:2092358
  rows: 7
  genes: 3
  title: The cellobiose permease of Escherichia coli consists of three proteins and is homologous to the lactose permease
    of Staphylococcus aureus.
  year: '1990'
  analysis_class: single_gene_study
  class_source: curated
  class_note: E. coli cellobiose permease operon.
  assigned_by:
    EcoCyc: 7
  taxa:
    '83333': 7
  aspects:
    P: 3
    F: 3
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 7
  top_terms:
    GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system: 3
    GO:0090566 protein-phosphocysteine-N,N'-diacetylchitobiose phosphotransferase system transporter activity: 2
    GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity: 1
    GO:0005886 plasma membrane: 1
- reference: PMID:16603573
  rows: 6
  genes: 6
  title: Identification and stoichiometry of glycosylphosphatidylinositol-anchored membrane proteins of the human malaria
    parasite Plasmodium falciparum.
  year: '2006'
  analysis_class: proteomics
  class_source: curated
  class_note: Metabolic-labelling proteomics plus prediction of GPI-anchored P. falciparum proteins.
  assigned_by:
    GeneDB: 6
  taxa:
    '36329': 6
  aspects:
    C: 6
  negated_rows: 0
  annotation_years:
    '2014': 6
  top_terms:
    GO:0005886 plasma membrane: 6
- reference: PMID:19288220
  rows: 6
  genes: 1
  title: Isolation and characterization of a cotton cdh-like gene.
  year: '2010'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Cotton cdh-like gene.
  assigned_by:
    AgBase: 6
  taxa:
    '3635': 6
  aspects:
    P: 6
  negated_rows: 0
  annotation_years:
    '2011': 6
  top_terms:
    GO:0009408 response to heat: 1
    GO:0009414 response to water deprivation: 1
    GO:0009416 response to light stimulus: 1
    GO:0009960 endosperm development: 1
    GO:0048507 meristem development: 1
- reference: PMID:9620272
  rows: 6
  genes: 3
  title: Maize contains a Lon protease gene that can partially complement a yeast pim1-deletion mutant.
  year: '1998'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Maize LON1 protease.
  assigned_by:
    AgBase: 6
  taxa:
    '83333': 2
    '34': 2
    '559292': 2
  aspects:
    F: 6
  negated_rows: 0
  annotation_years:
    '2009': 6
  top_terms:
    GO:0005524 ATP binding: 3
    GO:0008236 serine-type peptidase activity: 3
- reference: PMID:11244102
  rows: 6
  genes: 3
  title: Aquaporins constitute a large and highly divergent protein family in maize.
  year: '2001'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: Maize aquaporin family.
  assigned_by:
    AgBase: 6
  taxa:
    '3847': 2
    '4577': 2
    '34305': 2
  aspects:
    P: 6
  negated_rows: 0
  annotation_years:
    '2009': 6
  top_terms:
    GO:0006833 water transport: 3
    GO:0015793 glycerol transmembrane transport: 3
- reference: PMID:19497128
  rows: 6
  genes: 2
  title: 'LeishCyc: a biochemical pathways database for Leishmania major.'
  year: '2009'
  analysis_class: pathway_or_metabolic_model
  class_source: curated
  class_note: LeishCyc pathway database.
  assigned_by:
    GeneDB: 6
  taxa:
    '5664': 6
  aspects:
    P: 3
    F: 3
  negated_rows: 0
  annotation_years:
    '2010': 6
  top_terms:
    GO:0006094 gluconeogenesis: 1
    GO:0004743 pyruvate kinase activity: 1
    GO:0006565 L-serine catabolic process: 1
    GO:0006567 L-threonine catabolic process: 1
    GO:0003941 L-serine ammonia-lyase activity: 1
- reference: PMID:17927906
  rows: 5
  genes: 1
  title: Cotton GhKCH2, a plant-specific kinesin, is low-affinitive and nucleotide-independent as binding to microtubule.
  year: '2007'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Cotton kinesin GhKCH2.
  assigned_by:
    AgBase: 5
  taxa:
    '3635': 5
  aspects:
    F: 5
  negated_rows: 0
  annotation_years:
    '2010': 5
  top_terms:
    GO:0003774 cytoskeletal motor activity: 1
    GO:0003779 actin binding: 1
    GO:0005524 ATP binding: 1
    GO:0008017 microtubule binding: 1
    GO:0008569 minus-end-directed microtubule motor activity: 1
- reference: PMID:19294420
  rows: 5
  genes: 5
  title: 'Return to sender: use of Plasmodium ER retrieval sequences to study protein transport in the infected erythrocyte
    and predict putative ER protein families.'
  year: '2009'
  analysis_class: family_or_genome_survey
  class_source: curated
  class_note: Plasmodium ER-retrieval signal families predicted from sequence; GFP proof of principle.
  assigned_by:
    GeneDB: 5
  taxa:
    '36329': 5
  aspects:
    C: 5
  negated_rows: 0
  annotation_years:
    '2010': 5
  top_terms:
    GO:0005783 endoplasmic reticulum: 4
    GO:0005788 endoplasmic reticulum lumen: 1
- reference: PMID:19578975
  rows: 5
  genes: 4
  title: Molecular cloning and characterization of five genes encoding pentatricopeptide repeat proteins from Upland cotton
    (Gossypium hirsutum L.).
  year: '2010'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Cotton PPR genes.
  assigned_by:
    AgBase: 5
  taxa:
    '3635': 5
  aspects:
    C: 4
    P: 1
  negated_rows: 0
  annotation_years:
    '2011': 5
  top_terms:
    GO:0005739 mitochondrion: 3
    GO:0009451 RNA modification: 1
    GO:0009507 chloroplast: 1
- reference: PMID:8057835
  rows: 5
  genes: 2
  title: A seven-gene operon essential for formate-dependent nitrite reduction to ammonia by enteric bacteria.
  year: '1994'
  analysis_class: single_gene_study
  class_source: curated
  class_note: nrf operon.
  assigned_by:
    EcoCyc: 5
  taxa:
    '83333': 5
  aspects:
    P: 2
    C: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2012': 5
  top_terms:
    GO:0019645 anaerobic electron transport chain: 2
    GO:0005886 plasma membrane: 2
    GO:0051539 4 iron, 4 sulfur cluster binding: 1
- reference: PMID:2188958
  rows: 5
  genes: 3
  title: 'Sulfate and thiosulfate transport in Escherichia coli K-12: nucleotide sequence and expression of the cysTWAM gene
    cluster.'
  year: '1990'
  analysis_class: single_gene_study
  class_source: curated
  class_note: cysTWAM sulfate transport genes.
  assigned_by:
    EcoCyc: 5
  taxa:
    '83333': 5
  aspects:
    C: 5
  negated_rows: 0
  annotation_years:
    '2017': 5
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 3
    GO:0005886 plasma membrane: 2
- reference: PMID:1838574
  rows: 5
  genes: 3
  title: 'Nucleotide sequence and genetic organization of the ferric enterobactin transport system: homology to other periplasmic
    binding protein-dependent systems in Escherichia coli.'
  year: '1991'
  analysis_class: single_gene_study
  class_source: curated
  class_note: fep ferric enterobactin transport genes.
  assigned_by:
    EcoCyc: 5
  taxa:
    '83333': 5
  aspects:
    C: 5
  negated_rows: 0
  annotation_years:
    '2014': 2
    '2016': 3
  top_terms:
    GO:0005886 plasma membrane: 2
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 2
    GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing: 1
- reference: PMID:26631410
  rows: 4
  genes: 4
  title: Cation dependencies and turnover rates of the human K⁺-dependent Na⁺-Ca²⁺ exchangers NCKX1, NCKX2, NCKX3 and NCKX4.
  year: '2016'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 4
  taxa:
    '9606': 4
  aspects:
    C: 4
  negated_rows: 0
  annotation_years:
    '2020': 4
  top_terms:
    GO:0005886 plasma membrane: 4
- reference: PMID:10417723
  rows: 4
  genes: 2
  title: Oxygen deprivation stimulates Ca2+-mediated phosphorylation of mRNA cap-binding protein eIF4E in maize roots.
  year: '1999'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 4
  taxa:
    '4577': 4
  aspects:
    F: 4
  negated_rows: 0
  annotation_years:
    '2009': 4
  top_terms:
    GO:0000340 RNA 7-methylguanosine cap binding: 2
    GO:0031370 eukaryotic initiation factor 4G binding: 2
- reference: PMID:9772162
  rows: 4
  genes: 2
  title: 'Evolution of enzymatic activities in the enolase superfamily: characterization of the (D)-glucarate/galactarate
    catabolic pathway in Escherichia coli.'
  year: '1998'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 4
  taxa:
    '83333': 4
  aspects:
    P: 4
  negated_rows: 0
  annotation_years:
    '2019': 4
  top_terms:
    GO:0019580 galactarate metabolic process: 2
    GO:0042836 D-glucarate metabolic process: 2
- reference: PMID:2187144
  rows: 4
  genes: 4
  title: Nucleotide sequence and expression of an operon in Escherichia coli coding for formate hydrogenlyase components.
  year: '1990'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 4
  taxa:
    '83333': 4
  aspects:
    F: 3
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 4
  top_terms:
    GO:0051539 4 iron, 4 sulfur cluster binding: 2
    GO:0005886 plasma membrane: 1
    GO:0016151 nickel cation binding: 1
- reference: PMID:11421275
  rows: 4
  genes: 2
  title: Bacterial transporters for sulfate and organosulfur compounds.
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 4
  taxa:
    '83333': 4
  aspects:
    C: 3
    F: 1
  negated_rows: 0
  annotation_years:
    '2014': 4
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 2
    GO:0005886 plasma membrane: 1
    GO:0015426 ATPase-coupled polar amino acid-transporter activity: 1
- reference: PMID:7846163
  rows: 4
  genes: 2
  title: Two genes encoding GF14 (14-3-3) proteins in Zea mays. Structure, expression, and potential regulation by the G-box
    binding complex.
  year: '1994'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 4
  taxa:
    '4577': 4
  aspects:
    F: 4
  negated_rows: 0
  annotation_years:
    '2009': 4
  top_terms:
    GO:0005509 calcium ion binding: 2
    GO:0008426 protein kinase C inhibitor activity: 2
- reference: PMID:9751644
  rows: 4
  genes: 4
  title: 'Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli
    and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function.'
  year: '1998'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 4
  taxa:
    '83333': 4
  aspects:
    C: 4
  negated_rows: 0
  annotation_years:
    '2017': 4
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 4
- reference: DOI:10.1016/j.pmpp.2005.09.006
  rows: 4
  genes: 2
  title: ''
  year: ''
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 4
  taxa:
    '3635': 4
  aspects:
    P: 2
    C: 2
  negated_rows: 0
  annotation_years:
    '2011': 4
  top_terms:
    GO:0009723 response to ethylene: 2
    GO:0005576 extracellular region: 2
- reference: PMID:18171595
  rows: 3
  genes: 1
  title: Characterization and expression analysis of TERMINAL FLOWER1 homologs from cultivated alloteraploid cotton (Gossypium
    hirsutum) and its diploid progenitors.
  year: '2008'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '29729': 3
  aspects:
    P: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2011': 3
  top_terms:
    GO:0008134 transcription factor binding: 1
    GO:0009416 response to light stimulus: 1
    GO:0009733 response to auxin: 1
- reference: PMID:12657463
  rows: 3
  genes: 3
  title: The Plasmodium falciparum family of Rab GTPases.
  year: '2003'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    GeneDB: 3
  taxa:
    '36329': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2009': 3
  top_terms:
    GO:0016020 membrane: 3
- reference: PMID:18541913
  rows: 3
  genes: 3
  title: Specific DNA-binding by apicomplexan AP2 transcription factors.
  year: '2008'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    GeneDB: 3
  taxa:
    '36329': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2009': 3
  top_terms:
    GO:0005634 nucleus: 3
- reference: PMID:19885739
  rows: 3
  genes: 1
  title: Molecular cloning and localization of a novel cotton annexin gene expressed preferentially during fiber development.
  year: '2010'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '3635': 3
  aspects:
    F: 3
  negated_rows: 0
  annotation_years:
    '2012': 3
  top_terms:
    GO:0003779 actin binding: 1
    GO:0005525 GTP binding: 1
    GO:0020037 heme binding: 1
- reference: PMID:2195019
  rows: 3
  genes: 3
  title: Nucleotide sequence and genetic characterization reveal six essential genes for the LIV-I and LS transport systems
    of Escherichia coli.
  year: '1990'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2016': 3
  top_terms:
    GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing: 3
- reference: PMID:10506196
  rows: 3
  genes: 3
  title: The Escherichia coli ssuEADCB gene cluster is required for the utilization of sulfur from aliphatic sulfonates and
    is regulated by the transcriptional activator Cbl.
  year: '1999'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
    '2017': 2
  top_terms:
    GO:0005524 ATP binding: 1
    GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing: 1
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:21488939
  rows: 3
  genes: 1
  title: 'Overproduction of YjbB reduces the level of polyphosphate in Escherichia coli: a hypothetical role of YjbB in phosphate
    export and polyphosphate accumulation.'
  year: '2011'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    P: 1
    F: 1
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 3
  top_terms:
    GO:0035435 phosphate ion transmembrane transport: 1
    GO:0005315 phosphate transmembrane transporter activity: 1
    GO:0005886 plasma membrane: 1
- reference: PMID:3062310
  rows: 3
  genes: 3
  title: 'Nucleotide sequence of the ugp genes of Escherichia coli K-12: homology to the maltose system.'
  year: '1988'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2013': 2
    '2016': 1
  top_terms:
    GO:0005886 plasma membrane: 2
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 1
- reference: PMID:9205844
  rows: 3
  genes: 2
  title: Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli.
  year: '1997'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 1
    F: 1
    P: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
    '2019': 1
    '2022': 1
  top_terms:
    GO:0016020 membrane: 1
    GO:0000155 phosphorelay sensor kinase activity: 1
    GO:0007165 signal transduction: 1
- reference: PMID:9535878
  rows: 3
  genes: 2
  title: thiBPQ encodes an ABC transporter required for transport of thiamine and thiamine pyrophosphate in Salmonella typhimurium.
  year: '1998'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2017': 3
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 2
    GO:0005886 plasma membrane: 1
- reference: PMID:8955298
  rows: 3
  genes: 3
  title: Molecular analysis of the gat genes from Escherichia coli and of their roles in galactitol transport and metabolism.
  year: '1996'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2014': 3
  top_terms:
    GO:0005829 cytosol: 2
    GO:0005886 plasma membrane: 1
- reference: PMID:23222720
  rows: 3
  genes: 2
  title: Identification of a target gene and activating stimulus for the YpdA/YpdB histidine kinase/response regulator system
    in Escherichia coli.
  year: '2013'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    P: 2
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 3
  top_terms:
    GO:0055085 transmembrane transport: 1
    GO:0005886 plasma membrane: 1
    GO:0006355 regulation of DNA-templated transcription: 1
- reference: PMID:19688190
  rows: 3
  genes: 3
  title: Relationship between expression of voltage-dependent anion channel (VDAC) isoforms and type of hexokinase binding
    sites on brain mitochondria.
  year: '2010'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '9913': 2
    '9031': 1
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2012': 3
  top_terms:
    GO:0005739 mitochondrion: 3
- reference: PMID:15090514
  rows: 3
  genes: 2
  title: The pgaABCD locus of Escherichia coli promotes the synthesis of a polysaccharide adhesin required for biofilm formation.
  year: '2004'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2013': 3
  top_terms:
    GO:0005886 plasma membrane: 2
    GO:0008375 acetylglucosaminyltransferase activity: 1
- reference: PMID:16109926
  rows: 3
  genes: 3
  title: The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  year: '2005'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2016': 3
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 2
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:12192075
  rows: 3
  genes: 2
  title: The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within
    prokaryotic genomes.
  year: '2002'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2011': 2
    '2017': 1
  top_terms:
    GO:0015473 fimbrial usher porin activity: 1
    GO:0009279 cell outer membrane: 1
    GO:0019867 outer membrane: 1
- reference: PMID:24038693
  rows: 3
  genes: 2
  title: Overexpression of fetA (ybbL) and fetB (ybbM), Encoding an Iron Exporter, Enhances Resistance to Oxidative Stress
    in Escherichia coli.
  year: '2013'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 3
  taxa:
    '83333': 3
  aspects:
    C: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
    '2017': 2
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 2
    GO:0016887 ATP hydrolysis activity: 1
- reference: PMID:28842488
  rows: 3
  genes: 3
  title: Conserved functional consequences of disease-associated mutations in the slide helix of Kir6.1 and Kir6.2 subunits
    of the ATP-sensitive potassium channel.
  year: '2017'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 3
  taxa:
    '10116': 3
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2019': 3
  top_terms:
    GO:0031004 potassium ion-transporting ATPase complex: 3
- reference: PMID:16962183
  rows: 3
  genes: 1
  title: Biochemical characterization of Trypanosoma brucei RNA polymerase II.
  year: '2006'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    GeneDB: 3
  taxa:
    '185431': 3
  aspects:
    F: 2
    P: 1
  negated_rows: 0
  annotation_years:
    '2009': 1
    '2011': 2
  top_terms:
    GO:0006351 DNA-templated transcription: 1
    GO:0003677 DNA binding: 1
    GO:0003899 DNA-directed RNA polymerase activity: 1
- reference: PMID:15557092
  rows: 3
  genes: 1
  title: A plant-specific kinesin binds to actin microfilaments and interacts with cortical microtubules in cotton fibers.
  year: '2004'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '3635': 3
  aspects:
    F: 3
  negated_rows: 0
  annotation_years:
    '2010': 3
  top_terms:
    GO:0003777 microtubule motor activity: 1
    GO:0008017 microtubule binding: 1
    GO:0051015 actin filament binding: 1
- reference: PMID:21348939
  rows: 3
  genes: 1
  title: Characterization of a novel annexin gene from cotton (Gossypium hirsutum cv CRI 35) and antioxidative role of its
    recombinant protein.
  year: '2011'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '3635': 3
  aspects:
    F: 3
  negated_rows: 0
  annotation_years:
    '2011': 3
  top_terms:
    GO:0003779 actin binding: 1
    GO:0005525 GTP binding: 1
    GO:0005543 phospholipid binding: 1
- reference: PMID:12746521
  rows: 3
  genes: 1
  title: The cotton kinesin-like calmodulin-binding protein associates with cortical microtubules in cotton fibers.
  year: '2003'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '3635': 3
  aspects:
    F: 2
    P: 1
  negated_rows: 0
  annotation_years:
    '2010': 3
  top_terms:
    GO:0005516 calmodulin binding: 1
    GO:0008569 minus-end-directed microtubule motor activity: 1
    GO:0007018 microtubule-based movement: 1
- reference: PMID:12137958
  rows: 3
  genes: 3
  title: Metal resistance in yeast mediated by the expression of a maize 20S proteasome alpha subunit.
  year: '2002'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '4577': 1
    '39947': 1
    '4097': 1
  aspects:
    C: 3
  negated_rows: 0
  annotation_years:
    '2009': 3
  top_terms:
    GO:0005634 nucleus: 3
- reference: PMID:11004611
  rows: 3
  genes: 1
  title: Cloning and promoter analysis of the cotton lipid transfer protein gene Ltp3(1).
  year: '2000'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 3
  taxa:
    '3635': 3
  aspects:
    P: 2
    F: 1
  negated_rows: 0
  annotation_years:
    '2012': 3
  top_terms:
    GO:0008134 transcription factor binding: 1
    GO:0009737 response to abscisic acid: 1
    GO:0044403 biological process involved in symbiotic interaction: 1
- reference: PMID:17482578
  rows: 2
  genes: 1
  title: Cotton flavonoid structural genes related to the pigmentation in brown fibers.
  year: '2007'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '3635': 2
  aspects:
    F: 1
    P: 1
  negated_rows: 0
  annotation_years:
    '2010': 2
  top_terms:
    GO:0045430 chalcone isomerase activity: 1
    GO:0009813 flavonoid biosynthetic process: 1
- reference: PMID:18507789
  rows: 2
  genes: 1
  title: The HD-Zip IV gene GaHOX1 from cotton is a functional homologue of the Arabidopsis GLABRA2.
  year: '2008'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '29729': 2
  aspects:
    F: 1
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 2
  top_terms:
    GO:0003700 DNA-binding transcription factor activity: 1
    GO:0005634 nucleus: 1
- reference: PMID:36932689
  rows: 2
  genes: 2
  title: Neofunctionalization of tandem duplicate genes encoding putative β-L-arabinofuranosidases in Arabidopsis.
  year: '2023'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    TAIR: 2
  taxa:
    '3702': 2
  aspects:
    F: 2
  negated_rows: 0
  annotation_years:
    '2023': 2
  top_terms:
    GO:0102478 beta-L-arabinofuranosidase activity: 2
- reference: PMID:6305515
  rows: 2
  genes: 2
  title: Sensory transducers of E. coli are composed of discrete structural and functional domains.
  year: '1983'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2013': 2
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:2828044
  rows: 2
  genes: 2
  title: Nucleotide sequence and linkage map position of the genes for ribosomal proteins L14 and S8 in the maize chloroplast
    genome.
  year: '1988'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '4577': 2
  aspects:
    F: 2
  negated_rows: 0
  annotation_years:
    '2008': 2
  top_terms:
    GO:0043022 ribosome binding: 2
- reference: PMID:8564363
  rows: 2
  genes: 2
  title: Molecular analysis of the molybdate uptake operon, modABCD, of Escherichia coli and modR, a regulatory gene.
  year: '1995'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2016': 2
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 2
- reference: PMID:3279394
  rows: 2
  genes: 2
  title: Nucleotide sequencing of the ruv region of Escherichia coli K-12 reveals a LexA regulated operon encoding two genes.
  year: '1988'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 2
  negated_rows: 0
  annotation_years:
    '2011': 2
  top_terms:
    GO:0009432 SOS response: 2
- reference: PMID:20070887
  rows: 2
  genes: 2
  title: Predicting the pathway involved in post-translational modification of elongation factor P in a subset of bacterial
    species.
  year: '2010'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 2
  negated_rows: 0
  annotation_years:
    '2010': 2
  top_terms:
    GO:0043687 post-translational protein modification: 2
- reference: PMID:9680209
  rows: 2
  genes: 2
  title: The ZnuABC high-affinity zinc uptake system and its regulator Zur in Escherichia coli.
  year: '1998'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2017': 2
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 2
- reference: PMID:16573693
  rows: 2
  genes: 1
  title: The Escherichia coli plasma membrane contains two PHB (prohibitin homology) domain protein complexes of opposite
    orientations.
  year: '2006'
  analysis_class: single_gene_study
  class_source: curated
  class_note: Two PHB-domain complexes of the E. coli membrane (title rule mis-calls interactomics).
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2019': 2
  top_terms:
    GO:0005829 cytosol: 1
    GO:0005886 plasma membrane: 1
- reference: PMID:23131563
  rows: 2
  genes: 1
  title: Genome-wide screen for Escherichia coli genes involved in repressing cell-to-cell transfer of non-conjugative plasmids.
  year: '2012'
  analysis_class: genetic_screen
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    F: 1
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 2
  top_terms:
    GO:0003677 DNA binding: 1
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:27525505
  rows: 2
  genes: 2
  title: SEDS proteins are a widespread family of bacterial cell wall polymerases.
  year: '2016'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 2
  negated_rows: 0
  annotation_years:
    '2016': 2
  top_terms:
    GO:0009252 peptidoglycan biosynthetic process: 2
- reference: PMID:11432728
  rows: 2
  genes: 1
  title: The drug/metabolite transporter superfamily.
  year: '2001'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 1
    F: 1
  negated_rows: 0
  annotation_years:
    '2010': 2
  top_terms:
    GO:0055085 transmembrane transport: 1
    GO:0022857 transmembrane transporter activity: 1
- reference: PMID:2180913
  rows: 2
  genes: 2
  title: Cloning and sequencing of a putative Escherichia coli [NiFe] hydrogenase-1 operon containing six open reading frames.
  year: '1990'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2015': 2
  top_terms:
    GO:0044569 [Ni-Fe] hydrogenase complex: 2
- reference: PMID:21148555
  rows: 2
  genes: 2
  title: Three phosphatidylglycerol-phosphate phosphatases in the inner membrane of Escherichia coli.
  year: '2011'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2011': 2
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:8801422
  rows: 2
  genes: 2
  title: 'A third periplasmic transport system for L-arginine in Escherichia coli: molecular characterization of the artPIQMJ
    genes, arginine binding and transport.'
  year: '1995'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2014': 2
  top_terms:
    GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing: 2
- reference: PMID:15044727
  rows: 2
  genes: 2
  title: Experimentally based topology models for E. coli inner membrane proteins.
  year: '2004'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2012': 1
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:17873039
  rows: 2
  genes: 2
  title: The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  year: '2007'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2016': 2
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:8550448
  rows: 2
  genes: 1
  title: Amplification of a novel gene, sanA, abolishes a vancomycin-sensitive defect in Escherichia coli.
  year: '1996'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2016': 2
  top_terms:
    GO:0005886 plasma membrane: 1
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:8041620
  rows: 2
  genes: 1
  title: Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes.
  year: '1994'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2017': 2
  top_terms:
    GO:0005886 plasma membrane: 1
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 1
- reference: PMID:15612918
  rows: 2
  genes: 1
  title: The morphogenetic MreBCD proteins of Escherichia coli form an essential membrane-bound complex.
  year: '2005'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2018': 2
  top_terms:
    GO:0005829 cytosol: 1
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:1787794
  rows: 2
  genes: 2
  title: Organization of genes encoding membrane proteins of the Escherichia coli ferrienterobactin permease.
  year: '1991'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2014': 1
    '2016': 1
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:12787347
  rows: 2
  genes: 2
  title: The Escherichia coli amidase AmiC is a periplasmic septal ring component exported via the twin-arginine transport
    pathway.
  year: '2003'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2015': 2
  top_terms:
    GO:0030288 outer membrane-bounded periplasmic space: 2
- reference: PMID:8830272
  rows: 2
  genes: 2
  title: Cation and sugar selectivity determinants in a novel family of transport proteins.
  year: '1996'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2014': 2
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:9274005
  rows: 2
  genes: 1
  title: Is the ribulose monophosphate pathway widely distributed in bacteria?
  year: '1997'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 1
    F: 1
  negated_rows: 0
  annotation_years:
    '2014': 2
  top_terms:
    GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system: 1
    GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity: 1
- reference: PMID:12626684
  rows: 2
  genes: 2
  title: Two families of mechanosensitive channel proteins.
  year: '2003'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2012': 2
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:11929534
  rows: 2
  genes: 1
  title: 'Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two-component regulatory system involved in
    the regulation of flagella and motility by quorum sensing in E. coli.'
  year: '2002'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 1
    F: 1
  negated_rows: 0
  annotation_years:
    '2019': 2
  top_terms:
    GO:0007165 signal transduction: 1
    GO:0000155 phosphorelay sensor kinase activity: 1
- reference: PMID:11259419
  rows: 2
  genes: 1
  title: The internal repeats in the Na+/Ca2+ exchanger-related Escherichia coli protein YrbG have opposite membrane topologies.
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 1
    F: 1
  negated_rows: 0
  annotation_years:
    '2012': 2
  top_terms:
    GO:0055085 transmembrane transport: 1
    GO:0022857 transmembrane transporter activity: 1
- reference: PMID:11004177
  rows: 2
  genes: 1
  title: The torYZ (yecK bisZ) operon encodes a third respiratory trimethylamine N-oxide reductase in Escherichia coli.
  year: '2000'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 1
    F: 1
  negated_rows: 0
  annotation_years:
    '2018': 2
  top_terms:
    GO:0019645 anaerobic electron transport chain: 1
    GO:0009055 electron transfer activity: 1
- reference: PMID:1961737
  rows: 2
  genes: 2
  title: Functional analysis in yeast of cDNA coding for the mitochondrial Rieske iron-sulfur protein of higher plants.
  year: '1991'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '4577': 1
    '4097': 1
  aspects:
    F: 2
  negated_rows: 0
  annotation_years:
    '2009': 2
  top_terms:
    GO:0051537 2 iron, 2 sulfur cluster binding: 2
- reference: PMID:8875915
  rows: 2
  genes: 2
  title: Proposed topology of the glucitol permeases of Escherichia coli and Clostridium acetobutylicum.
  year: '1996'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2013': 2
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:23202856
  rows: 2
  genes: 2
  title: Allosteric activation of exopolysaccharide synthesis through cyclic di-GMP-stimulated protein-protein interaction.
  year: '2013'
  analysis_class: single_gene_study
  class_source: curated
  class_note: c-di-GMP-stimulated interaction in exopolysaccharide synthesis (title rule mis-calls interactomics).
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2013': 2
  top_terms:
    GO:0005886 plasma membrane: 2
- reference: PMID:8353127
  rows: 2
  genes: 2
  title: Two open reading frames adjacent to the Escherichia coli K-12 transketolase (tkt) gene show high similarity to the
    mannitol phosphotransferase system enzymes from Escherichia coli and various gram-positive bacteria.
  year: '1993'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2014': 2
  top_terms:
    GO:0005737 cytoplasm: 1
    GO:0005886 plasma membrane: 1
- reference: PMID:10539975
  rows: 2
  genes: 1
  title: High-level expression, functional reconstitution, and quaternary structure of a prokaryotic ClC-type chloride channel.
  year: '1999'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 1
    F: 1
  negated_rows: 0
  annotation_years:
    '2015': 2
  top_terms:
    GO:1902476 chloride transmembrane transport: 1
    GO:0005254 chloride channel activity: 1
- reference: PMID:31062059
  rows: 2
  genes: 1
  title: Flotillin homologue is involved in the swimming behavior of Escherichia coli.
  year: '2019'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2019': 2
  top_terms:
    GO:0005829 cytosol: 1
    GO:0005886 plasma membrane: 1
- reference: PMID:24948475
  rows: 2
  genes: 1
  title: The histidine kinase CusS senses silver ions through direct binding by its sensor domain.
  year: '2014'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2019': 2
  top_terms:
    GO:0005829 cytosol: 1
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:9829935
  rows: 2
  genes: 1
  title: Characterization of mutations that allow p-aminobenzoyl-glutamate utilization by Escherichia coli.
  year: '1998'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 2
  taxa:
    '83333': 2
  aspects:
    P: 1
    F: 1
  negated_rows: 0
  annotation_years:
    '2004': 1
    '2010': 1
  top_terms:
    GO:0006351 DNA-templated transcription: 1
    GO:0003700 DNA-binding transcription factor activity: 1
- reference: PMID:9230934
  rows: 2
  genes: 2
  title: Structures and functions of annexins in plants.
  year: '1997'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '3635': 2
  aspects:
    F: 2
  negated_rows: 0
  annotation_years:
    '2012': 2
  top_terms:
    GO:0005509 calcium ion binding: 2
- reference: PMID:16806528
  rows: 2
  genes: 2
  title: The mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase of Trypanosomatidae and the glycosomal redox balance
    of insect stages of Trypanosoma brucei and Leishmania spp.
  year: '2006'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    GeneDB: 2
  taxa:
    '185431': 1
    '5664': 1
  aspects:
    P: 2
  negated_rows: 0
  annotation_years:
    '2009': 2
  top_terms:
    GO:0019563 glycerol catabolic process: 2
- reference: PMID:12591614
  rows: 2
  genes: 2
  title: Molecular cloning, differential expression, and functional characterization of a family of class I ubiquitin-conjugating
    enzyme (E2) genes in cotton (Gossypium).
  year: '2003'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '3635': 2
  aspects:
    P: 2
  negated_rows: 0
  annotation_years:
    '2011': 2
  top_terms:
    GO:0016567 protein ubiquitination: 2
- reference: PMID:24368669
  rows: 2
  genes: 2
  title: Porcine sst1 can physically interact with other somatostatin receptors, and its expression is regulated by metabolic/inflammatory
    sensors.
  year: '2014'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '9823': 2
  aspects:
    C: 2
  negated_rows: 0
  annotation_years:
    '2014': 2
  top_terms:
    GO:0016020 membrane: 2
- reference: PMID:11080589
  rows: 2
  genes: 1
  title: Genomic cloning and characterization of mitochondrial elongation factor Tu (EF-Tu) gene (tufM) from maize (Zea mays
    L.).
  year: '2000'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '4577': 2
  aspects:
    F: 1
    C: 1
  negated_rows: 0
  annotation_years:
    '2009': 2
  top_terms:
    GO:0005525 GTP binding: 1
    GO:0005739 mitochondrion: 1
- reference: PMID:15762638
  rows: 2
  genes: 1
  title: 'Structure-function relationship of avian eggshell matrix proteins: a comparative study of two major eggshell matrix
    proteins, ansocalcin and OC-17.'
  year: '2005'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '9031': 2
  aspects:
    P: 1
    C: 1
  negated_rows: 0
  annotation_years:
    '2009': 2
  top_terms:
    GO:0031214 biomineral tissue development: 1
    GO:0031012 extracellular matrix: 1
- reference: PMID:15358513
  rows: 2
  genes: 1
  title: Characterization of GhRac1 GTPase expressed in developing cotton (Gossypium hirsutum L.) fibers.
  year: '2004'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 2
  taxa:
    '3635': 2
  aspects:
    F: 2
  negated_rows: 0
  annotation_years:
    '2010': 2
  top_terms:
    GO:0003924 GTPase activity: 1
    GO:0005525 GTP binding: 1
- reference: PMID:32991878
  rows: 1
  genes: 1
  title: Human kidney stone matrix proteins alleviate hyperoxaluria induced renal stress by targeting cell-crystal interactions.
  year: '2020'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    UniProt: 1
  taxa:
    '9606': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2021': 1
  top_terms:
    GO:0046904 calcium oxalate binding: 1
- reference: DOI:10.1007/s11105-009-0136-x
  rows: 1
  genes: 1
  title: ''
  year: ''
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3634': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005634 nucleus: 1
- reference: PMID:15846337
  rows: 1
  genes: 1
  title: The genome sequence of the rice blast fungus Magnaporthe grisea.
  year: '2005'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    PAMGO_MGG: 1
  taxa:
    '242507': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2008': 1
  top_terms:
    GO:0045132 meiotic chromosome segregation: 1
- reference: PMID:19121005
  rows: 1
  genes: 1
  title: Small membrane proteins found by comparative genomics and ribosome binding site models.
  year: '2008'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:17562283
  rows: 1
  genes: 1
  title: A novel MAP kinase gene in cotton (Gossypium hirsutum L.), GhMAPK, is involved in response to diverse environmental
    stresses.
  year: '2007'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0004707 MAP kinase activity: 1
- reference: DOI:10.1016/j.plantsci.2007.04.008
  rows: 1
  genes: 1
  title: ''
  year: ''
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0019722 calcium-mediated signaling: 1
- reference: PMID:17927914
  rows: 1
  genes: 1
  title: Molecular characterization of a transient expression gene encoding for 1-aminocyclopropane-1-carboxylate synthase
    in cotton (Gossypium hirsutum L.).
  year: '2007'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0030170 pyridoxal phosphate binding: 1
- reference: PMID:21040305
  rows: 1
  genes: 1
  title: The cotton ATP synthase δ1 subunit is required to maintain a higher ATP/ADP ratio that facilitates rapid fibre cell
    elongation.
  year: '2010'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005739 mitochondrion: 1
- reference: PMID:21733855
  rows: 1
  genes: 1
  title: A cotton gene encoding novel MADS-box protein is preferentially expressed in fibers and functions in cell elongation.
  year: '2011'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0003677 DNA binding: 1
- reference: PMID:21757635
  rows: 1
  genes: 1
  title: A novel isoform of sucrose synthase is targeted to the cell wall during secondary cell wall synthesis in cotton fiber.
  year: '2011'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0003779 actin binding: 1
- reference: PMID:22133687
  rows: 1
  genes: 1
  title: A cotton mitogen-activated protein kinase (GhMPK6) is involved in ABA-induced CAT1 expression and H(2)O(2) production.
  year: '2011'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0004707 MAP kinase activity: 1
- reference: DOI:10.1016/S0168-9452(02)00416-8
  rows: 1
  genes: 1
  title: ''
  year: ''
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    TAIR: 1
  taxa:
    '3702': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:11592815
  rows: 1
  genes: 1
  title: 'Sequence and functional analysis of GLUT10: a glucose transporter in the Type 2 diabetes-linked region of chromosome
    20q12-13.1.'
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '9606': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:16550171
  rows: 1
  genes: 1
  title: Mutations in the facilitative glucose transporter GLUT10 alter angiogenesis and cause arterial tortuosity syndrome.
  year: '2006'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '9606': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:16759635
  rows: 1
  genes: 1
  title: The Cu(II)-reductase NADH dehydrogenase-2 of Escherichia coli improves the bacterial growth in extreme copper concentrations
    and increases the resistance to the damage caused by copper and hydroperoxide.
  year: '2006'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:3882429
  rows: 1
  genes: 1
  title: The nucleotide sequences of the ponA and ponB genes encoding penicillin-binding protein 1A and 1B of Escherichia
    coli K12.
  year: '1985'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2015': 1
  top_terms:
    GO:0004185 serine-type carboxypeptidase activity: 1
- reference: PMID:8031825
  rows: 1
  genes: 1
  title: A functional superfamily of sodium/solute symporters.
  year: '1994'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0015486 glycoside-pentoside-hexuronide:cation symporter activity: 1
- reference: PMID:6147250
  rows: 1
  genes: 1
  title: The fimA gene encoding the type-1 fimbrial subunit of Escherichia coli. Nucleotide sequence and primary structure
    of the protein.
  year: '1984'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0009289 pilus: 1
- reference: PMID:6374654
  rows: 1
  genes: 1
  title: 'Structure of the Trg protein: Homologies with and differences from other sensory transducers of Escherichia coli.'
  year: '1984'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:3553176
  rows: 1
  genes: 1
  title: Glucitol-specific enzymes of the phosphotransferase system in Escherichia coli. Nucleotide sequence of the gut operon.
  year: '1987'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005737 cytoplasm: 1
- reference: PMID:3528129
  rows: 1
  genes: 1
  title: Nucleotide sequence of the btuCED genes involved in vitamin B12 transport in Escherichia coli and homology with components
    of periplasmic-binding-protein-dependent transport systems.
  year: '1986'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005524 ATP binding: 1
- reference: PMID:1660136
  rows: 1
  genes: 1
  title: Disulfide cross-linking studies of the transmembrane regions of the aspartate sensory receptor of Escherichia coli.
  year: '1991'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:9756872
  rows: 1
  genes: 1
  title: Topology of the Na+/proline transporter of Escherichia coli.
  year: '1998'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:3881386
  rows: 1
  genes: 1
  title: 'Phosphate-specific transport system of Escherichia coli: nucleotide sequence and gene-polypeptide relationships.'
  year: '1985'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:3329281
  rows: 1
  genes: 1
  title: 'Nucleotide sequence and transcriptional startpoint of the glpT gene of Escherichia coli: extensive sequence homology
    of the glycerol-3-phosphate transport protein with components of the hexose-6-phosphate transport system.'
  year: '1987'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2009': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:3531171
  rows: 1
  genes: 1
  title: 'Nucleotide sequence of the phoM region of Escherichia coli: four open reading frames may constitute an operon.'
  year: '1986'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:7592420
  rows: 1
  genes: 1
  title: Organization and transcriptional regulation of the Escherichia coli K-12 D-serine tolerance locus.
  year: '1995'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:3284790
  rows: 1
  genes: 1
  title: 'Nucleotide sequences of the Escherichia coli nagE and nagB genes: the structural genes for the N-acetylglucosamine
    transport protein of the bacterial phosphoenolpyruvate: sugar phosphotransferase system and for glucosamine-6-phosphate
    deaminase.'
  year: '1988'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:7665460
  rows: 1
  genes: 1
  title: Genetic analysis of the modABCD (molybdate transport) operon of Escherichia coli.
  year: '1995'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 1
- reference: PMID:12107143
  rows: 1
  genes: 1
  title: pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli.
  year: '2002'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2017': 1
  top_terms:
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:27866852
  rows: 1
  genes: 1
  title: 'OmpA: A Flexible Clamp for Bacterial Cell Wall Attachment.'
  year: '2016'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0042834 peptidoglycan binding: 1
- reference: PMID:30442809
  rows: 1
  genes: 1
  title: Protein assemblies ejected directly from native membranes yield complexes for mass spectrometry.
  year: '2018'
  analysis_class: proteomics
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:1901612 cardiolipin binding: 1
- reference: PMID:11916677
  rows: 1
  genes: 1
  title: The ybiT gene of Erwinia chrysanthemi codes for a putative ABC transporter and is involved in competitiveness against
    endophytic bacteria during infection.
  year: '2002'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005524 ATP binding: 1
- reference: PMID:18456815
  rows: 1
  genes: 1
  title: Temperature sensitivity and cell division defects in an Escherichia coli strain with mutations in yghB and yqjA,
    encoding related and conserved inner membrane proteins.
  year: '2008'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:10082980
  rows: 1
  genes: 1
  title: Phylogenetic characterization of novel transport protein families revealed by genome analyses.
  year: '1999'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0015295 solute:proton symporter activity: 1
- reference: PMID:1640834
  rows: 1
  genes: 1
  title: Characterization of the Escherichia coli codBA operon encoding cytosine permease and cytosine deaminase.
  year: '1992'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:3053659
  rows: 1
  genes: 1
  title: Molecular characterization of the tdc operon of Escherichia coli K-12.
  year: '1988'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:8021226
  rows: 1
  genes: 1
  title: Cloning, sequencing, and mutational analysis of the hyb operon encoding Escherichia coli hydrogenase 2.
  year: '1994'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2015': 1
  top_terms:
    GO:0051536 iron-sulfur cluster binding: 1
- reference: PMID:20616037
  rows: 1
  genes: 1
  title: YbdG in Escherichia coli is a threshold-setting mechanosensitive channel with MscM activity.
  year: '2010'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:24391520
  rows: 1
  genes: 1
  title: A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor
    metabolism.
  year: '2014'
  analysis_class: genetic_screen
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:7961485
  rows: 1
  genes: 1
  title: Identification of FtsW and characterization of a new ftsW division mutant of Escherichia coli.
  year: '1994'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:8314774
  rows: 1
  genes: 1
  title: Sequence and topology of the CorA magnesium transport systems of Salmonella typhimurium and Escherichia coli. Identification
    of a new class of transport protein.
  year: '1993'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:8842153
  rows: 1
  genes: 1
  title: The role of the genes nrf EFG and ccmFH in cytochrome c biosynthesis in Escherichia coli.
  year: '1996'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2022': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:8449962
  rows: 1
  genes: 1
  title: Topology of the ExbB protein in the cytoplasmic membrane of Escherichia coli.
  year: '1993'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:16120447
  rows: 1
  genes: 1
  title: Experimentally constrained topology models for 51,208 bacterial inner membrane proteins.
  year: '2005'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:22685278
  rows: 1
  genes: 1
  title: First insights into the unexplored two-component system YehU/YehT in Escherichia coli.
  year: '2012'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2023': 1
  top_terms:
    GO:0007165 signal transduction: 1
- reference: PMID:15178340
  rows: 1
  genes: 1
  title: 'BOF: a novel family of bacterial OB-fold proteins.'
  year: '2004'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:3520334
  rows: 1
  genes: 1
  title: Peptide chemotaxis in E. coli involves the Tap signal transducer and the dipeptide permease.
  year: '1986'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:8455549
  rows: 1
  genes: 1
  title: 'Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression
    is enhanced in a hns deletion mutant.'
  year: '1993'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:15304217
  rows: 1
  genes: 1
  title: Crystal structure of Skp, a prefoldin-like chaperone that protects soluble and membrane proteins from aggregation.
  year: '2004'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0001530 lipopolysaccharide binding: 1
- reference: PMID:8057857
  rows: 1
  genes: 1
  title: The C-terminal sequence conservation between OmpA-related outer membrane proteins and MotB suggests a common function
    in both gram-positive and gram-negative bacteria, possibly in the interaction of these domains with peptidoglycan.
  year: '1994'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0042834 peptidoglycan binding: 1
- reference: PMID:18708495
  rows: 1
  genes: 1
  title: Involvement of an essential gene, mviN, in murein synthesis in Escherichia coli.
  year: '2008'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:15561822
  rows: 1
  genes: 1
  title: PnuC and the utilization of the nicotinamide riboside analog 3-aminopyridine in Haemophilus influenzae.
  year: '2004'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:16385049
  rows: 1
  genes: 1
  title: YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through autoinducer 2 transport.
  year: '2006'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:19525345
  rows: 1
  genes: 1
  title: LytM-domain factors are required for daughter cell separation and rapid ampicillin-induced lysis in Escherichia coli.
  year: '2009'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:12620121
  rows: 1
  genes: 1
  title: Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes.
  year: '2003'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0004175 endopeptidase activity: 1
- reference: PMID:18715016
  rows: 1
  genes: 1
  title: 'Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for
    a novel cysteine peptidase catalytic triad.'
  year: '2008'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0009279 cell outer membrane: 1
- reference: PMID:8183941
  rows: 1
  genes: 1
  title: Posttranslational modifications in microcin B17 define an additional class of DNA gyrase inhibitor.
  year: '1994'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:11591690
  rows: 1
  genes: 1
  title: 'Genetic analysis of the Sinorhizobium meliloti BacA protein: differential effects of mutations on phenotypes.'
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:10515954
  rows: 1
  genes: 1
  title: The modality of enterobacterial common antigen polysaccharide chain lengths is regulated by o349 of the wec gene
    cluster of Escherichia coli K-12.
  year: '1999'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:10386596
  rows: 1
  genes: 1
  title: The novel transmembrane Escherichia coli proteins involved in the amino acid efflux.
  year: '1999'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:2156798
  rows: 1
  genes: 1
  title: Topology of the Escherichia coli uhpT sugar-phosphate transporter analyzed by using TnphoA fusions.
  year: '1990'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:2820984
  rows: 1
  genes: 1
  title: The cloning and DNA sequence of the gene xylE for xylose-proton symport in Escherichia coli K12.
  year: '1987'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:2993631
  rows: 1
  genes: 1
  title: Nucleotide sequence of the genes involved in phosphate transport and regulation of the phosphate regulon in Escherichia
    coli.
  year: '1985'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:21423164
  rows: 1
  genes: 1
  title: Structure and mechanism of the uracil transporter UraA.
  year: '2011'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0015505 uracil:monoatomic cation symporter activity: 1
- reference: PMID:8421314
  rows: 1
  genes: 1
  title: Isolation and sequencing of Escherichia coli gene proP reveals unusual structural features of the osmoregulatory
    proline/betaine transporter, ProP.
  year: '1993'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:20376576
  rows: 1
  genes: 1
  title: Characterization and promoter analysis of a cotton RING-type ubiquitin ligase (E3) gene.
  year: '2010'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0008270 zinc ion binding: 1
- reference: PMID:10227690
  rows: 1
  genes: 1
  title: 'Defective glucose transport across brain tissue barriers: a newly recognized neurological syndrome.'
  year: '1999'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '9606': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:2651410
  rows: 1
  genes: 1
  title: Nucleotide sequences of the fecBCDE genes and locations of the proteins suggest a periplasmic-binding-protein-dependent
    transport mechanism for iron(III) dicitrate in Escherichia coli.
  year: '1989'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2017': 1
  top_terms:
    GO:0042626 ATPase-coupled transmembrane transporter activity: 1
- reference: PMID:1856179
  rows: 1
  genes: 1
  title: The malX malY operon of Escherichia coli encodes a novel enzyme II of the phosphotransferase system recognizing glucose
    and maltose and an enzyme abolishing the endogenous induction of the maltose system.
  year: '1991'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:3076173
  rows: 1
  genes: 1
  title: Nucleotide sequence of fruA, the gene specifying enzyme IIfru of the phosphoenolpyruvate-dependent sugar phosphotransferase
    system in Escherichia coli K12.
  year: '1988'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:7896833
  rows: 1
  genes: 1
  title: EmrE, an Escherichia coli 12-kDa multidrug transporter, exchanges toxic cations and H+ and is soluble in organic
    solvents.
  year: '1995'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:9021204
  rows: 1
  genes: 1
  title: Expression of Escherichia coli TehA gives resistance to antiseptics and disinfectants similar to that conferred by
    multidrug resistance efflux pumps.
  year: '1997'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:9804807
  rows: 1
  genes: 1
  title: Membrane topology of the 60-kDa Oxa1p homologue from Escherichia coli.
  year: '1998'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:9535865
  rows: 1
  genes: 1
  title: The assembly system for the lipopolysaccharide R2 core-type of Escherichia coli is a hybrid of those found in Escherichia
    coli K-12 and Salmonella enterica. Structure and function of the R2 WaaK and WaaL homologs.
  year: '1998'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2018': 1
  top_terms:
    GO:0008713 ADP-heptose-lipopolysaccharide heptosyltransferase activity: 1
- reference: PMID:25114049
  rows: 1
  genes: 1
  title: Structure and function of TatD exonuclease in DNA repair.
  year: '2014'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0046872 metal ion binding: 1
- reference: PMID:1508040
  rows: 1
  genes: 1
  title: Identification and characterization of narQ, a second nitrate sensor for nitrate-dependent gene regulation in Escherichia
    coli.
  year: '1992'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:18369469
  rows: 1
  genes: 1
  title: A new family of lysozyme inhibitors contributing to lysozyme tolerance in gram-negative bacteria.
  year: '2008'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0031241 periplasmic side of cell outer membrane: 1
- reference: PMID:1289796
  rows: 1
  genes: 1
  title: Cloning and sequence analysis of the evgAS genes involved in signal transduction of Escherichia coli K-12.
  year: '1992'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0000155 phosphorelay sensor kinase activity: 1
- reference: PMID:8416922
  rows: 1
  genes: 1
  title: Characteristics of the operon for a putrescine transport system that maps at 19 minutes on the Escherichia coli chromosome.
  year: '1993'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2009': 1
  top_terms:
    GO:0005524 ATP binding: 1
- reference: PMID:8407802
  rows: 1
  genes: 1
  title: Molecular cloning and characterization of acrA and acrE genes of Escherichia coli.
  year: '1993'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:10209755
  rows: 1
  genes: 1
  title: The identification of a new family of sugar efflux pumps in Escherichia coli.
  year: '1999'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0034219 carbohydrate transmembrane transport: 1
- reference: PMID:28093455
  rows: 1
  genes: 1
  title: Genomewide landscape of gene-metabolome associations in Escherichia coli.
  year: '2017'
  analysis_class: other_omics
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2017': 1
  top_terms:
    GO:0006012 galactose metabolic process: 1
- reference: PMID:8165228
  rows: 1
  genes: 1
  title: Adenine transport in Escherichia coli.
  year: '1994'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:31613892
  rows: 1
  genes: 1
  title: Protease-associated import systems are widespread in Gram-negative bacteria.
  year: '2019'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:1901678 iron coordination entity transport: 1
- reference: PMID:12761386
  rows: 1
  genes: 1
  title: 'Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli
    K12, Escherichia coli O157:H7, and other Gram-negative bacteria.'
  year: '2003'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2017': 1
  top_terms:
    GO:0009279 cell outer membrane: 1
- reference: PMID:8486654
  rows: 1
  genes: 1
  title: Macrosialin, a mouse macrophage-restricted glycoprotein, is a member of the lamp/lgp family.
  year: '1993'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '10090': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0005765 lysosomal membrane: 1
- reference: PMID:15485810
  rows: 1
  genes: 1
  title: Identification of a new member of the phage shock protein response in Escherichia coli, the phage shock protein G
    (PspG).
  year: '2004'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:9401019
  rows: 1
  genes: 1
  title: The D-allose operon of Escherichia coli K-12.
  year: '1997'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 1
- reference: PMID:8407843
  rows: 1
  genes: 1
  title: Three overlapping lct genes involved in L-lactate utilization by Escherichia coli.
  year: '1993'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:2045418
  rows: 1
  genes: 1
  title: Structure of a new nervous system glycoprotein, Nr-CAM, and its relationship to subgroups of neural cell adhesion
    molecules.
  year: '1991'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '9031': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2005': 1
  top_terms:
    GO:0005789 endoplasmic reticulum membrane: 1
- reference: PMID:19957935
  rows: 1
  genes: 1
  title: Studying a cell division amidase using defined peptidoglycan substrates.
  year: '2009'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2015': 1
  top_terms:
    GO:0008270 zinc ion binding: 1
- reference: PMID:7959070
  rows: 1
  genes: 1
  title: Escherichia coli contains a set of genes homologous to those involved in protein secretion, DNA uptake and the assembly
    of type-4 fimbriae in other bacteria.
  year: '1994'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:7608078
  rows: 1
  genes: 1
  title: Molecular analysis of treB encoding the Escherichia coli enzyme II specific for trehalose.
  year: '1995'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:22089966
  rows: 1
  genes: 1
  title: Bacterial glyphosate resistance conferred by overexpression of an E. coli membrane efflux transporter.
  year: '2012'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:20345943
  rows: 1
  genes: 1
  title: Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities.
  year: '2010'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0009289 pilus: 1
- reference: PMID:10931886
  rows: 1
  genes: 1
  title: The amino acid/polyamine/organocation (APC) superfamily of transporters specific for amino acids, polyamines and
    organocations.
  year: '2000'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2015': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:9119199
  rows: 1
  genes: 1
  title: Characterization of a novel transporter family that includes multiple Escherichia coli gluconate transporters and
    their homologues.
  year: '1997'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:22426385
  rows: 1
  genes: 1
  title: Functional and biochemical characterisation of the Escherichia coli major facilitator superfamily multidrug transporter
    MdtM.
  year: '2012'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:29061664
  rows: 1
  genes: 1
  title: BtsT, a Novel and Specific Pyruvate/H(+) Symporter in Escherichia coli.
  year: '2018'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2017': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:11309126
  rows: 1
  genes: 1
  title: 'A novel feature of the multistep phosphorelay in Escherichia coli: a revised model of the RcsC --> YojN --> RcsB
    signalling pathway implicated in capsular synthesis and swarming behaviour.'
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0018106 peptidyl-histidine phosphorylation: 1
- reference: PMID:22223895
  rows: 1
  genes: 1
  title: Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-α-acetylation
    features.
  year: '2012'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    UniProt: 1
  taxa:
    '3702': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0009507 chloroplast: 1
- reference: PMID:27795327
  rows: 1
  genes: 1
  title: pqiABC and yebST, Putative mce Operons of Escherichia coli, Encode Transport Pathways and Contribute to Membrane
    Integrity.
  year: '2017'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:8919859
  rows: 1
  genes: 1
  title: Alternative gene for biotin sulfoxide reduction in Escherichia coli K-12.
  year: '1996'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2018': 1
  top_terms:
    GO:0043546 molybdopterin cofactor binding: 1
- reference: PMID:8987357
  rows: 1
  genes: 1
  title: Proton-dependent multidrug efflux systems.
  year: '1996'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2018': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:12892888
  rows: 1
  genes: 1
  title: Identification of the CysB-regulated gene, hslJ, related to the Escherichia coli novobiocin resistance phenotype.
  year: '2003'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:7629105
  rows: 1
  genes: 1
  title: Primary structure, functional expression, and chromosomal localization of the bumetanide-sensitive Na-K-Cl cotransporter
    in human colon.
  year: '1995'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '9606': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:8809774
  rows: 1
  genes: 1
  title: Mutational analysis and properties of the msbA gene of Escherichia coli, coding for an essential ABC family transporter.
  year: '1996'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0043190 ATP-binding cassette (ABC) transporter complex: 1
- reference: PMID:16397293
  rows: 1
  genes: 1
  title: 'Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.'
  year: '2006'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2015': 1
  top_terms:
    GO:0005829 cytosol: 1
- reference: PMID:21531828
  rows: 1
  genes: 1
  title: Inducible L-alanine exporter encoded by the novel gene ygaW (alaE) in Escherichia coli.
  year: '2011'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:22491786
  rows: 1
  genes: 1
  title: E. coli LoiP (YggG), a metalloprotease hydrolyzing Phe-Phe bonds.
  year: '2012'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0008237 metallopeptidase activity: 1
- reference: PMID:12011002
  rows: 1
  genes: 1
  title: 'Quorum-sensing Escherichia coli regulator A: a regulator of the LysR family involved in the regulation of the locus
    of enterocyte effacement pathogenicity island in enterohemorrhagic E. coli.'
  year: '2002'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2004': 1
  top_terms:
    GO:0006351 DNA-templated transcription: 1
- reference: PMID:27226611
  rows: 1
  genes: 1
  title: Identification and Functional Characterization of a Novel OprD-like Chitin Uptake Channel in Non-chitinolytic Bacteria.
  year: '2016'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0009279 cell outer membrane: 1
- reference: PMID:7817396
  rows: 1
  genes: 1
  title: The POT family of transport proteins.
  year: '1994'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0015333 peptide:proton symporter activity: 1
- reference: PMID:11544226
  rows: 1
  genes: 1
  title: Novel macrolide-specific ABC-type efflux transporter in Escherichia coli.
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0008559 ABC-type xenobiotic transporter activity: 1
- reference: PMID:38748582
  rows: 1
  genes: 1
  title: YdbH and YnbE form an intermembrane bridge to maintain lipid homeostasis in the outer membrane of Escherichia coli.
  year: '2024'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2024': 1
  top_terms:
    GO:0030288 outer membrane-bounded periplasmic space: 1
- reference: PMID:12876315
  rows: 1
  genes: 1
  title: Prediction of lipoprotein signal peptides in Gram-negative bacteria.
  year: '2003'
  analysis_class: proteome_scale_prediction
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2016': 1
  top_terms:
    GO:0009279 cell outer membrane: 1
- reference: PMID:29535276
  rows: 1
  genes: 1
  title: Discovery and characterization of a sulfoquinovose mutarotase using kinetic analysis at equilibrium by exchange spectroscopy.
  year: '2018'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives: 1
- reference: PMID:11004187
  rows: 1
  genes: 1
  title: Identification of a copper-responsive two-component system on the chromosome of Escherichia coli K-12.
  year: '2000'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0009279 cell outer membrane: 1
- reference: PMID:24082128
  rows: 1
  genes: 1
  title: Peptide transporter DtpA has two alternate conformations, one of which is promoted by inhibitor binding.
  year: '2013'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:11439028
  rows: 1
  genes: 1
  title: Crystal structures of YBHB and YBCL from Escherichia coli, two bacterial homologues to a Raf kinase inhibitor protein.
  year: '2001'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2007': 1
  top_terms:
    GO:0004857 enzyme inhibitor activity: 1
- reference: PMID:11361063
  rows: 1
  genes: 1
  title: The complete phosphotransferase system in Escherichia coli.
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system: 1
- reference: PMID:9701802
  rows: 1
  genes: 1
  title: Destabilized inheritance of pSC101 and other Escherichia coli plasmids by DpiA, a novel two-component system regulator.
  year: '1998'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:9098055
  rows: 1
  genes: 1
  title: Genetic characterization and expression in heterologous hosts of the 3-(3-hydroxyphenyl)propionate catabolic pathway
    of Escherichia coli K-12.
  year: '1997'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2011': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:33543001
  rows: 1
  genes: 1
  title: The in-silico characterization of the Caenorhabditis elegans matrisome and proposal of a novel collagen classification.
  year: '2019'
  analysis_class: proteome_scale_prediction
  class_source: curated
  class_note: Same in-silico C. elegans matrisome paper as the DOI entry, cited by PMID.
  assigned_by:
    WB: 1
  taxa:
    '6239': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2024': 1
  top_terms:
    GO:0005201 extracellular matrix structural constituent: 1
- reference: PMID:18534200
  rows: 1
  genes: 1
  title: Functional characterization of the histidine kinase of the E. coli two-component signal transduction system AtoS-AtoC.
  year: '2008'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:7756356
  rows: 1
  genes: 1
  title: Molecular cloning of PEPT 2, a new member of the H+/peptide cotransporter family, from human kidney.
  year: '1995'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '9606': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:17122407
  rows: 1
  genes: 1
  title: Genetic and biochemical studies in yeast reveal that the cotton fibre-specific GhCER6 gene functions in fatty acid
    elongation.
  year: '2007'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '3635': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:11283302
  rows: 1
  genes: 1
  title: The gene yghK linked to the glc operon of Escherichia coli encodes a permease for glycolate that is structurally
    and functionally similar to L-lactate permease.
  year: '2001'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    EcoCyc: 1
  taxa:
    '83333': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:16923389
  rows: 1
  genes: 1
  title: Fatty acid synthesis by elongases in trypanosomes.
  year: '2006'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    GeneDB: 1
  taxa:
    '5664': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0009922 fatty acid elongase activity: 1
- reference: PMID:22228366
  rows: 1
  genes: 1
  title: Advances in Aspergillus secondary metabolite research in the post-genomic era.
  year: '2012'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AspGD: 1
  taxa:
    '330879': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2012': 1
  top_terms:
    GO:0019748 secondary metabolic process: 1
- reference: PMID:16399803
  rows: 1
  genes: 1
  title: ELONGATED UPPERMOST INTERNODE encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation
    reaction in rice.
  year: '2006'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    GR: 1
  taxa:
    '39947': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2006': 1
  top_terms:
    GO:0004497 monooxygenase activity: 1
- reference: PMID:17416733
  rows: 1
  genes: 1
  title: Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence.
  year: '2007'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    GR: 1
  taxa:
    '39947': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2008': 1
  top_terms:
    GO:0042170 plastid membrane: 1
- reference: PMID:17148693
  rows: 1
  genes: 1
  title: 'Two novel nuclear genes, OsSIG5 and OsSIG6, encoding potential plastid sigma factors of RNA polymerase in rice:
    tissue-specific and light-responsive gene expression.'
  year: '2007'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    GR: 1
  taxa:
    '39947': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2006': 1
  top_terms:
    GO:0009536 plastid: 1
- reference: PMID:17675402
  rows: 1
  genes: 1
  title: A germ cell specific gene of the ARGONAUTE family is essential for the progression of premeiotic mitosis and meiosis
    during sporogenesis in rice.
  year: '2007'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    GR: 1
  taxa:
    '39947': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2008': 1
  top_terms:
    GO:0005737 cytoplasm: 1
- reference: PMID:14651609
  rows: 1
  genes: 1
  title: Characterization of a non-mitochondrial type I phosphatidylserine decarboxylase in Plasmodium falciparum.
  year: '2004'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    GeneDB: 1
  taxa:
    '36329': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2009': 1
  top_terms:
    GO:0016020 membrane: 1
- reference: PMID:23181666
  rows: 1
  genes: 1
  title: Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum.
  year: '2012'
  analysis_class: proteomics
  class_source: title-rule
  class_note: ''
  assigned_by:
    GeneDB: 1
  taxa:
    '36329': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2013': 1
  top_terms:
    GO:0005634 nucleus: 1
- reference: PMID:19536257
  rows: 1
  genes: 1
  title: A newly discovered protein export machine in malaria parasites.
  year: '2009'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    GeneDB: 1
  taxa:
    '36329': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2009': 1
  top_terms:
    GO:0034214 protein hexamerization: 1
- reference: PMID:17181785
  rows: 1
  genes: 1
  title: A novel protein kinase family in Plasmodium falciparum is differentially transcribed and secreted to various cellular
    compartments of the host cell.
  year: '2007'
  analysis_class: family_or_genome_survey
  class_source: title-rule
  class_note: ''
  assigned_by:
    GeneDB: 1
  taxa:
    '36329': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2009': 1
  top_terms:
    GO:0006468 protein phosphorylation: 1
- reference: PMID:24850912
  rows: 1
  genes: 1
  title: Reduced ribosomes of the apicoplast and mitochondrion of Plasmodium spp. and predicted interactions with antibiotics.
  year: '2014'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    GeneDB: 1
  taxa:
    '36329': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2014': 1
  top_terms:
    GO:0005739 mitochondrion: 1
- reference: PMID:26005868
  rows: 1
  genes: 1
  title: Inactivating mutations in MFSD2A, required for omega-3 fatty acid transport in brain, cause a lethal microcephaly
    syndrome.
  year: '2015'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '9606': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2020': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:11278684
  rows: 1
  genes: 1
  title: A vertebrate aldo-keto reductase active with retinoids and ethanol.
  year: '2001'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '9031': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2010': 1
  top_terms:
    GO:0042574 retinal metabolic process: 1
- reference: PMID:15180986
  rows: 1
  genes: 1
  title: Crystal structure of human eIF3k, the first structure of eIF3 subunits.
  year: '2004'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    MGI: 1
  taxa:
    '10090': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2005': 1
  top_terms:
    GO:0003723 RNA binding: 1
- reference: PMID:25204629
  rows: 1
  genes: 1
  title: Expression patterns and protein structure of a lipid transfer protein END1 from Arabidopsis.
  year: '2014'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    TAIR: 1
  taxa:
    '3702': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0008289 lipid binding: 1
- reference: PMID:10611061
  rows: 1
  genes: 1
  title: Molecular cloning and functional characterization of a vasotocin receptor subtype that is expressed in the shell
    gland and brain of the domestic chicken.
  year: '2000'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '9031': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2006': 1
  top_terms:
    GO:0004930 G protein-coupled receptor activity: 1
- reference: PMID:34880232
  rows: 1
  genes: 1
  title: Molecular basis for redox control by the human cystine/glutamate antiporter system xc().
  year: '2021'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    UniProt: 1
  taxa:
    '9606': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2022': 1
  top_terms:
    GO:0015327 cystine:glutamate antiporter activity: 1
- reference: PMID:15682279
  rows: 1
  genes: 1
  title: OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression
    induces spikelet meristem indeterminacy.
  year: '2005'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    GR: 1
  taxa:
    '39947': 1
  aspects:
    P: 1
  negated_rows: 0
  annotation_years:
    '2006': 1
  top_terms:
    GO:0006351 DNA-templated transcription: 1
- reference: PMID:29500354
  rows: 1
  genes: 1
  title: CryoEM structure of the human SLC4A4 sodium-coupled acid-base transporter NBCe1.
  year: '2018'
  analysis_class: unclassified
  class_source: unclassified
  class_note: ''
  assigned_by:
    ARUK-UCL: 1
  taxa:
    '9606': 1
  aspects:
    C: 1
  negated_rows: 0
  annotation_years:
    '2019': 1
  top_terms:
    GO:0005886 plasma membrane: 1
- reference: PMID:10103044
  rows: 1
  genes: 1
  title: Identification of chURP, a nuclear calmodulin-binding protein related to hnRNP-U.
  year: '1999'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '9031': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2008': 1
  top_terms:
    GO:0000166 nucleotide binding: 1
- reference: PMID:9952460
  rows: 1
  genes: 1
  title: Molecular cloning and expression analysis of the mitochondrial pyruvate dehydrogenase from maize.
  year: '1999'
  analysis_class: single_gene_study
  class_source: title-rule
  class_note: ''
  assigned_by:
    AgBase: 1
  taxa:
    '4577': 1
  aspects:
    F: 1
  negated_rows: 0
  annotation_years:
    '2009': 1
  top_terms:
    GO:0030976 thiamine pyrophosphate binding: 1