round gene accession term_id term_label os_outcome os_assessment yaml_assessment agreement yaml_cites_openscientist openscientist_reports_on_disk yaml_rationale_excerpt review_file report_line 1 ARTAN/A0A2U1PS28 A0A2U1PS28 GO:0009507 chloroplast Supported COR COR AGREE true 4 genes/ARTAN/A0A2U1PS28/A0A2U1PS28-protnlm-predictions-review.yaml 41 1 DROVI/B4MAQ2 B4MAQ2 GO:0005737 cytoplasm Supported (incomplete) COR CNN SAME_DIRECTION true 1 Cytoplasm is already present in cached GOA and UniProt. genes/DROVI/B4MAQ2/B4MAQ2-protnlm-predictions-review.yaml 42 1 CALMI/A0A4W3GVU1 A0A4W3GVU1 GO:0005634 nucleus Supported COR CNN SAME_DIRECTION true 1 The gene already carries nucleus in GOA (accepted in the gene review), so the prediction is correct but not novel. genes/CALMI/A0A4W3GVU1/A0A4W3GVU1-protnlm-predictions-review.yaml 43 1 STRCO/Q9L243 Q9L243 GO:0009264 deoxyribonucleotide catabolic process Over-annotated NPI UNC OVERRIDE true 1 genes/STRCO/Q9L243/Q9L243-protnlm-predictions-review.yaml 44 1 AQUCT/A0A2G9RZF1 A0A2G9RZF1 GO:0007338 single fertilization Refuted NPI UNC OVERRIDE true 2 genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-protnlm-predictions-review.yaml 45 1 ORYSI/B8BAB0 B8BAB0 GO:0010152 pollen maturation Refuted NPI PLI SAME_DIRECTION true 1 genes/ORYSI/B8BAB0/B8BAB0-protnlm-predictions-review.yaml 46 1 WHEAT/A0A3B6RKV1 A0A3B6RKV1 GO:0010099 regulation of photomorphogenesis Split NPI UNC OVERRIDE true 2 Orthology supports a conserved nuclear JmjC oxygenase but does not establish that the wheat protein sits in an equivalent light-signalling circuit, so the term can be neither confirmed nor refuted. genes/WHEAT/A0A3B6RKV1/A0A3B6RKV1-protnlm-predictions-review.yaml 47 1 WHEAT/A0A3B6RKV1 A0A3B6RKV1 GO:0010476 gibberellin mediated signaling pathway Split NPI NPI AGREE true 2 That is regulation of hormone synthesis, not participation in gibberellin perception or signal transduction, and the reviewed JMJ22 record describes the role as triggering GA biosynthesis. genes/WHEAT/A0A3B6RKV1/A0A3B6RKV1-protnlm-predictions-review.yaml 47 1 WHEAT/A0A3B6RKV1 A0A3B6RKV1 GO:0010114 response to red light Split NPI UNC OVERRIDE true 2 conservation of the catalytic domain does not establish conservation of its transcriptional control, and no wheat expression or genetic study was found by PubMed search. genes/WHEAT/A0A3B6RKV1/A0A3B6RKV1-protnlm-predictions-review.yaml 47 1 WHEAT/A0A3B6RKV1 A0A3B6RKV1 GO:0010030 positive regulation of seed germination Split NPI UNC OVERRIDE true 2 A related germination role is plausible but not established, and the term is absent from the target's GOA annotations. genes/WHEAT/A0A3B6RKV1/A0A3B6RKV1-protnlm-predictions-review.yaml 47 1 PHATC/B7FXQ8 B7FXQ8 GO:0009651 response to salt stress Over-annotated NPI UNC OVERRIDE true 2 Characterised sHSP client binding (PMID:29983375) does not establish a salt-triggered response. genes/PHATC/B7FXQ8/B7FXQ8-protnlm-predictions-review.yaml 48 1 PHATC/B7FXQ8 B7FXQ8 GO:0042542 response to hydrogen peroxide Over-annotated NPI UNC OVERRIDE true 2 No peroxide induction, protection or perturbation data exist for B7FXQ8 or a characterised protein in its diatom lineage, and the OpenScientist analysis flags the peroxide prediction as an outlier. genes/PHATC/B7FXQ8/B7FXQ8-protnlm-predictions-review.yaml 48 1 ORYSJ/Q6YYC5 Q6YYC5 GO:0070534 protein K63-linked ubiquitination Undecidable UNC UNC AGREE true 2 genes/ORYSJ/Q6YYC5/Q6YYC5-protnlm-predictions-review.yaml 49 1 SOYBN/C6T1A2 C6T1A2 GO:0009788 negative regulation of abscisic acid-activated signaling pathway Undecidable UNC UNC AGREE true 2 genes/SOYBN/C6T1A2/C6T1A2-protnlm-predictions-review.yaml 50 1 ABRPR/A0A8B8L1Z3 A0A8B8L1Z3 GO:0005783 endoplasmic reticulum Run failed NPI NO_VERDICT false 0 genes/ABRPR/A0A8B8L1Z3/A0A8B8L1Z3-protnlm-predictions-review.yaml 51 2 ARATH/F4JLB7 F4JLB7 GO:0016301 kinase activity confirmed PLI NPI SAME_DIRECTION true 1 genes/ARATH/F4JLB7/F4JLB7-protnlm-predictions-review.yaml 62 2 ARATH/F4JLB7 F4JLB7 GO:0016310 phosphorylation confirmed PLI UNC OVERRIDE true 1 Nothing on the target establishes or excludes a role in phosphorylation, so the prediction remains uncertain. genes/ARATH/F4JLB7/F4JLB7-protnlm-predictions-review.yaml 62 2 MYTGA/A0A8B6GS20 A0A8B6GS20 GO:0004438 phosphatidylinositol-3-phosphate phosphatase activity confirmed NPI NPI AGREE true 1 genes/MYTGA/A0A8B6GS20/A0A8B6GS20-protnlm-predictions-review.yaml 63 2 ASPOR/Q2U1U6 Q2U1U6 GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds confirmed NPI NPI AGREE true 1 genes/ASPOR/Q2U1U6/Q2U1U6-protnlm-predictions-review.yaml 64 2 WHEAT/F6LAX4 F6LAX4 GO:0046982 protein heterodimerization activity confirmed NPI COR OVERRIDE true 1 genes/WHEAT/F6LAX4/F6LAX4-protnlm-predictions-review.yaml 65 2 WHEAT/F6LAX4 F6LAX4 GO:0043025 neuronal cell body confirmed NPI NPI AGREE true 1 genes/WHEAT/F6LAX4/F6LAX4-protnlm-predictions-review.yaml 65 2 WHEAT/F6LAX4 F6LAX4 GO:0007059 chromosome segregation confirmed NPI UNC OVERRIDE true 1 Support for the exact segregation term is therefore insufficient. genes/WHEAT/F6LAX4/F6LAX4-protnlm-predictions-review.yaml 65 2 WHEAT/F6LAX4 F6LAX4 GO:0043005 neuron projection confirmed NPI NPI AGREE true 1 genes/WHEAT/F6LAX4/F6LAX4-protnlm-predictions-review.yaml 65 2 WHEAT/F6LAX4 F6LAX4 GO:0000775 chromosome, centromeric region confirmed NPI COR OVERRIDE true 1 Centromere targeting depends on the regulatory subunit rather than on the scaffold itself, but the A subunit is a member of the holoenzyme residing there, which suffices for a cellular component annotation. genes/WHEAT/F6LAX4/F6LAX4-protnlm-predictions-review.yaml 65 2 WHEAT/F6LAX4 F6LAX4 GO:1990405 protein antigen binding confirmed NPI NPI AGREE true 1 genes/WHEAT/F6LAX4/F6LAX4-protnlm-predictions-review.yaml 65 2 CAEEL/A0A061AL94 A0A061AL94 GO:0006367 transcription initiation at RNA polymerase II promoter confirmed NPI UNC OVERRIDE true 1 genes/CAEEL/A0A061AL94/A0A061AL94-protnlm-predictions-review.yaml 66 2 XENTR/A0A8J0SCI2 A0A8J0SCI2 GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific confirmed NPI UNC OVERRIDE true 1 Absence of a recognizable activation domain is not decisive because activation can depend on partners or short interaction regions. genes/XENTR/A0A8J0SCI2/A0A8J0SCI2-protnlm-predictions-review.yaml 67 2 DANRE/A0A8M9QG43 A0A8M9QG43 GO:0016311 dephosphorylation confirmed NPI NPI AGREE true 1 genes/DANRE/A0A8M9QG43/A0A8M9QG43-protnlm-predictions-review.yaml 68 2 DROPS/A0A6I8W8A2 A0A6I8W8A2 GO:0016874 ligase activity confirmed NPI NPI AGREE true 1 genes/DROPS/A0A6I8W8A2/A0A6I8W8A2-protnlm-predictions-review.yaml 69 2 XENNA/D3VIU4 D3VIU4 GO:0015276 ligand-gated monoatomic ion channel activity confirmed NPI NPI AGREE true 1 genes/XENNA/D3VIU4/D3VIU4-protnlm-predictions-review.yaml 70 2 GADMO/A0A8C5FPT8 A0A8C5FPT8 GO:0005776 autophagosome overturned CNN COR SAME_DIRECTION true 1 This is a justified orthology transfer of experimentally grounded evidence. genes/GADMO/A0A8C5FPT8/A0A8C5FPT8-protnlm-predictions-review.yaml 71