species: PSEPK
annotation_release: GCF_000007565.2-RS_2025_02_17
level1_genome:
  loci_compared: 5390
  per_aspect:
    molecular_function:
      loci_ncbi: 3010
      loci_goa: 3306
      loci_goa_electronic: 3301
      loci_both: 2579
      loci_ncbi_only: 431
      loci_goa_only: 727
      terms_ncbi: 4571
      terms_goa: 8367
    biological_process:
      loci_ncbi: 2276
      loci_goa: 2840
      loci_goa_electronic: 2829
      loci_both: 1929
      loci_ncbi_only: 347
      loci_goa_only: 911
      terms_ncbi: 2649
      terms_goa: 5297
    cellular_component:
      loci_ncbi: 944
      loci_goa: 2309
      loci_goa_electronic: 2304
      loci_both: 830
      loci_ncbi_only: 114
      loci_goa_only: 1479
      terms_ncbi: 1044
      terms_goa: 3582
  genes_ncbi_only:
    count: 322
    by_ncbi_source:
      ArchId (CDD/SPARCLE): 213
      HMM:NF: 50
      HMM:TIGR: 45
      BlastRule: 8
      none: 4
      cluster: 2
  genes_goa_only:
    count: 780
    top_refseq_names:
      LysR substrate-binding domain-containing protein: 22
      ATP-binding protein: 13
      alpha/beta fold hydrolase: 11
      hypothetical protein: 10
      ABC transporter substrate-binding protein: 9
      substrate-binding periplasmic protein: 9
      LysR family transcriptional regulator: 8
      aspartate aminotransferase family protein: 7
      FecR domain-containing protein: 6
      MFS transporter: 6
      universal stress protein: 6
      extracellular solute-binding protein: 6
      RidA family protein: 6
      IS66-like element accessory protein TnpA: 6
      TetR/AcrR family transcriptional regulator: 5
      acyl-CoA dehydrogenase: 4
      carbon-nitrogen hydrolase family protein: 4
      aldehyde dehydrogenase family protein: 4
      aldehyde dehydrogenase: 4
      SDR family oxidoreductase: 4
      aldo/keto reductase: 4
      transporter substrate-binding domain-containing protein: 4
      non-ribosomal peptide synthetase: 4
      acyl-CoA dehydrogenase C-terminal domain-containing protein: 3
      peptidoglycan DD-metalloendopeptidase family protein: 3
  goslim_prokaryote_largest_differences:
  - slim: GO:0005737 cytoplasm
    ncbi: 99
    goa: 981
    goa_minus_ncbi: 882
  - slim: GO:0005886 plasma membrane
    ncbi: 196
    goa: 835
    goa_minus_ncbi: 639
  - slim: GO:0016070 RNA metabolic process
    ncbi: 143
    goa: 486
    goa_minus_ncbi: 343
  - slim: GO:0006351 DNA-templated transcription
    ncbi: 28
    goa: 348
    goa_minus_ncbi: 320
  - slim: GO:0003677 DNA binding
    ncbi: 352
    goa: 572
    goa_minus_ncbi: 220
  - slim: GO:0006355 regulation of DNA-templated transcription
    ncbi: 306
    goa: 462
    goa_minus_ncbi: 156
  - slim: GO:0050896 response to stimulus
    ncbi: 261
    goa: 404
    goa_minus_ncbi: 143
  - slim: GO:0016787 hydrolase activity
    ncbi: 479
    goa: 619
    goa_minus_ncbi: 140
  - slim: GO:0044283 small molecule biosynthetic process
    ncbi: 145
    goa: 273
    goa_minus_ncbi: 128
  - slim: GO:0005576 extracellular region
    ncbi: 114
    goa: 242
    goa_minus_ncbi: 128
  - slim: GO:0016740 transferase activity
    ncbi: 497
    goa: 613
    goa_minus_ncbi: 116
  - slim: GO:0016491 oxidoreductase activity
    ncbi: 405
    goa: 521
    goa_minus_ncbi: 116
  - slim: GO:0006520 amino acid metabolic process
    ncbi: 119
    goa: 235
    goa_minus_ncbi: 116
  - slim: GO:0140110 transcription regulator activity
    ncbi: 233
    goa: 316
    goa_minus_ncbi: 83
  - slim: GO:0006629 lipid metabolic process
    ncbi: 76
    goa: 153
    goa_minus_ncbi: 77
  - slim: GO:0003723 RNA binding
    ncbi: 51
    goa: 126
    goa_minus_ncbi: 75
  - slim: GO:0042597 periplasmic space
    ncbi: 38
    goa: 112
    goa_minus_ncbi: 74
  - slim: GO:1901135 carbohydrate derivative metabolic process
    ncbi: 131
    goa: 200
    goa_minus_ncbi: 69
  - slim: GO:0140096 catalytic activity, acting on a protein
    ncbi: 175
    goa: 241
    goa_minus_ncbi: 66
  - slim: GO:0140657 ATP-dependent activity
    ncbi: 274
    goa: 214
    goa_minus_ncbi: -60
  - slim: GO:0005975 carbohydrate metabolic process
    ncbi: 79
    goa: 132
    goa_minus_ncbi: 53
  - slim: GO:0140098 catalytic activity, acting on RNA
    ncbi: 87
    goa: 138
    goa_minus_ncbi: 51
  - slim: GO:0055086 nucleobase-containing small molecule metabolic process
    ncbi: 108
    goa: 151
    goa_minus_ncbi: 43
  - slim: GO:0023052 signaling
    ncbi: 124
    goa: 167
    goa_minus_ncbi: 43
  - slim: GO:0005215 transporter activity
    ncbi: 582
    goa: 545
    goa_minus_ncbi: -37
  - slim: GO:0016829 lyase activity
    ncbi: 116
    goa: 153
    goa_minus_ncbi: 37
  - slim: GO:0006281 DNA repair
    ncbi: 45
    goa: 80
    goa_minus_ncbi: 35
  - slim: GO:0006091 generation of precursor metabolites and energy
    ncbi: 56
    goa: 91
    goa_minus_ncbi: 35
  - slim: GO:0043226 organelle
    ncbi: 73
    goa: 106
    goa_minus_ncbi: 33
  - slim: GO:0016853 isomerase activity
    ncbi: 92
    goa: 124
    goa_minus_ncbi: 32
level2_by_source:
  ncbi_terms_vs_goa:
    ArchId (CDD/SPARCLE) [C]:
      compared: 444
      exact_pct: 68.9
      other_more_specific_pct: 4.7
      other_more_general_pct: 19.6
      only_pct: 6.8
      other_side_lacks_aspect: 82
    ArchId (CDD/SPARCLE) [F]:
      compared: 1892
      exact_pct: 66.4
      other_more_specific_pct: 6.0
      other_more_general_pct: 7.8
      only_pct: 19.9
      other_side_lacks_aspect: 424
    ArchId (CDD/SPARCLE) [P]:
      compared: 746
      exact_pct: 74.4
      other_more_specific_pct: 3.1
      other_more_general_pct: 2.3
      only_pct: 20.2
      other_side_lacks_aspect: 217
    BlastRule [F]:
      compared: 23
      exact_pct: 100.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 8
    BlastRule [P]:
      compared: 23
      exact_pct: 100.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 8
    HMM:NF [C]:
      compared: 125
      exact_pct: 96.0
      other_more_specific_pct: 1.6
      other_more_general_pct: 1.6
      only_pct: 0.8
      other_side_lacks_aspect: 5
    HMM:NF [F]:
      compared: 1060
      exact_pct: 88.9
      other_more_specific_pct: 2.1
      other_more_general_pct: 1.6
      only_pct: 7.5
      other_side_lacks_aspect: 74
    HMM:NF [P]:
      compared: 623
      exact_pct: 90.7
      other_more_specific_pct: 2.4
      other_more_general_pct: 0.5
      only_pct: 6.4
      other_side_lacks_aspect: 48
    HMM:TIGR [C]:
      compared: 358
      exact_pct: 79.1
      other_more_specific_pct: 2.5
      other_more_general_pct: 13.4
      only_pct: 5.0
      other_side_lacks_aspect: 28
    HMM:TIGR [F]:
      compared: 1027
      exact_pct: 83.1
      other_more_specific_pct: 3.1
      other_more_general_pct: 4.4
      only_pct: 9.4
      other_side_lacks_aspect: 50
    HMM:TIGR [P]:
      compared: 870
      exact_pct: 73.0
      other_more_specific_pct: 6.8
      other_more_general_pct: 4.9
      only_pct: 15.3
      other_side_lacks_aspect: 105
    cluster [C]:
      compared: 0
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 1
    cluster [F]:
      compared: 6
      exact_pct: 50.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 16.7
      only_pct: 33.3
      other_side_lacks_aspect: 1
    cluster [P]:
      compared: 4
      exact_pct: 100.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 0
    none [C]:
      compared: 0
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 1
    none [F]:
      compared: 3
      exact_pct: 66.7
      other_more_specific_pct: 0.0
      other_more_general_pct: 33.3
      only_pct: 0.0
      other_side_lacks_aspect: 3
    none [P]:
      compared: 1
      exact_pct: 100.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 4
  goa_terms_vs_ncbi:
    ARBA [C]:
      compared: 136
      exact_pct: 24.3
      other_more_specific_pct: 19.9
      other_more_general_pct: 33.8
      only_pct: 22.1
      other_side_lacks_aspect: 173
    ARBA [F]:
      compared: 727
      exact_pct: 42.1
      other_more_specific_pct: 29.8
      other_more_general_pct: 13.3
      only_pct: 14.7
      other_side_lacks_aspect: 182
    ARBA [P]:
      compared: 274
      exact_pct: 46.0
      other_more_specific_pct: 13.9
      other_more_general_pct: 14.6
      only_pct: 25.5
      other_side_lacks_aspect: 102
    EC2GO [F]:
      compared: 1007
      exact_pct: 62.2
      other_more_specific_pct: 5.2
      other_more_general_pct: 20.5
      only_pct: 12.2
      other_side_lacks_aspect: 227
    EXP [C]:
      compared: 2
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 50.0
      only_pct: 50.0
      other_side_lacks_aspect: 4
    EXP [F]:
      compared: 10
      exact_pct: 30.0
      other_more_specific_pct: 10.0
      other_more_general_pct: 30.0
      only_pct: 30.0
      other_side_lacks_aspect: 8
    EXP [P]:
      compared: 2
      exact_pct: 100.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 3
    GO inter-ontology links [C]:
      compared: 0
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 1
    GO inter-ontology links [P]:
      compared: 279
      exact_pct: 5.4
      other_more_specific_pct: 1.8
      other_more_general_pct: 38.4
      only_pct: 54.5
      other_side_lacks_aspect: 152
    IDA [F]:
      compared: 30
      exact_pct: 26.7
      other_more_specific_pct: 3.3
      other_more_general_pct: 23.3
      only_pct: 46.7
      other_side_lacks_aspect: 7
    IDA [P]:
      compared: 7
      exact_pct: 28.6
      other_more_specific_pct: 0.0
      other_more_general_pct: 14.3
      only_pct: 57.1
      other_side_lacks_aspect: 13
    IEP [P]:
      compared: 0
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 1
    IMP [C]:
      compared: 0
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 6
    IMP [F]:
      compared: 9
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 33.3
      only_pct: 66.7
      other_side_lacks_aspect: 5
    IMP [P]:
      compared: 4
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 100.0
      other_side_lacks_aspect: 1
    IPI [C]:
      compared: 1
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 100.0
      other_side_lacks_aspect: 14
    IPI [F]:
      compared: 16
      exact_pct: 6.2
      other_more_specific_pct: 0.0
      other_more_general_pct: 31.2
      only_pct: 62.5
      other_side_lacks_aspect: 20
    ISS [C]:
      compared: 1
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 100.0
      other_side_lacks_aspect: 3
    ISS [F]:
      compared: 5
      exact_pct: 40.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 60.0
      other_side_lacks_aspect: 3
    ISS [P]:
      compared: 4
      exact_pct: 50.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 50.0
      other_side_lacks_aspect: 1
    InterPro2GO [C]:
      compared: 743
      exact_pct: 76.9
      other_more_specific_pct: 17.9
      other_more_general_pct: 2.4
      only_pct: 2.8
      other_side_lacks_aspect: 377
    InterPro2GO [F]:
      compared: 4273
      exact_pct: 62.6
      other_more_specific_pct: 19.1
      other_more_general_pct: 4.5
      only_pct: 13.8
      other_side_lacks_aspect: 803
    InterPro2GO [P]:
      compared: 2213
      exact_pct: 72.4
      other_more_specific_pct: 10.0
      other_more_general_pct: 3.5
      only_pct: 14.1
      other_side_lacks_aspect: 596
    NAS [P]:
      compared: 0
      exact_pct: 0.0
      other_more_specific_pct: 0.0
      other_more_general_pct: 0.0
      only_pct: 0.0
      other_side_lacks_aspect: 1
    Rhea2GO [F]:
      compared: 722
      exact_pct: 66.5
      other_more_specific_pct: 1.9
      other_more_general_pct: 17.6
      only_pct: 14.0
      other_side_lacks_aspect: 90
    TreeGrafter [C]:
      compared: 445
      exact_pct: 30.1
      other_more_specific_pct: 6.7
      other_more_general_pct: 49.7
      only_pct: 13.5
      other_side_lacks_aspect: 992
    TreeGrafter [F]:
      compared: 1626
      exact_pct: 49.8
      other_more_specific_pct: 7.5
      other_more_general_pct: 21.8
      only_pct: 21.0
      other_side_lacks_aspect: 464
    TreeGrafter [P]:
      compared: 1055
      exact_pct: 41.1
      other_more_specific_pct: 4.2
      other_more_general_pct: 19.4
      only_pct: 35.3
      other_side_lacks_aspect: 544
    UniPathway2GO [P]:
      compared: 302
      exact_pct: 59.3
      other_more_specific_pct: 2.6
      other_more_general_pct: 14.9
      only_pct: 23.2
      other_side_lacks_aspect: 76
    UniProtKB-SubCell2GO [C]:
      compared: 673
      exact_pct: 40.6
      other_more_specific_pct: 15.2
      other_more_general_pct: 35.2
      only_pct: 9.1
      other_side_lacks_aspect: 854
    UniRule [C]:
      compared: 341
      exact_pct: 47.8
      other_more_specific_pct: 15.0
      other_more_general_pct: 25.5
      only_pct: 11.7
      other_side_lacks_aspect: 431
    UniRule [F]:
      compared: 2108
      exact_pct: 52.4
      other_more_specific_pct: 19.4
      other_more_general_pct: 4.6
      only_pct: 23.6
      other_side_lacks_aspect: 282
    UniRule [P]:
      compared: 1212
      exact_pct: 53.1
      other_more_specific_pct: 5.9
      other_more_general_pct: 7.9
      only_pct: 33.1
      other_side_lacks_aspect: 435
level3_reviews:
  reviewed_loci: 956
  ncbi_terms_by_review_class_pct:
    ALL:
      terms: 2078
      accepted: 63.5
      unassessed: 10.8
      modified: 6.1
      over_annotated_general: 4.7
      over_annotated: 4.5
      general_of_accepted: 3.9
      removed: 3.2
      specific_of_accepted: 2.1
      undecided: 1.2
      near_removed: 0.0
    HMM:TIGR:
      terms: 1071
      accepted: 69.9
      unassessed: 9.7
      modified: 4.9
      over_annotated: 3.6
      general_of_accepted: 3.4
      over_annotated_general: 2.9
      specific_of_accepted: 2.6
      removed: 2.0
      undecided: 0.8
      near_removed: 0.1
    HMM:NF:
      terms: 661
      accepted: 64.1
      modified: 7.3
      over_annotated: 7.1
      over_annotated_general: 6.5
      unassessed: 5.4
      removed: 5.1
      general_of_accepted: 2.3
      undecided: 1.4
      specific_of_accepted: 0.8
    ArchId (CDD/SPARCLE):
      terms: 346
      accepted: 42.5
      unassessed: 24.3
      general_of_accepted: 8.7
      modified: 7.5
      over_annotated_general: 6.6
      removed: 3.5
      specific_of_accepted: 2.9
      over_annotated: 2.0
      undecided: 2.0
  goa_terms_by_review_class_pct:
    ALL electronic:
      terms: 4926
      accepted: 66.9
      over_annotated_general: 11.6
      modified: 7.9
      over_annotated: 5.0
      removed: 4.8
      undecided: 1.8
      general_of_accepted: 1.3
      unassessed: 0.5
      specific_of_accepted: 0.2
    InterPro2GO:
      terms: 2690
      accepted: 62.3
      over_annotated_general: 17.2
      modified: 9.3
      over_annotated: 5.4
      removed: 4.3
      undecided: 1.3
      general_of_accepted: 0.2
      unassessed: 0.1
    UniRule:
      terms: 1658
      accepted: 82.6
      over_annotated_general: 4.7
      modified: 4.1
      over_annotated: 3.7
      removed: 2.2
      general_of_accepted: 1.0
      unassessed: 0.8
      undecided: 0.7
      specific_of_accepted: 0.2
    TreeGrafter:
      terms: 1486
      accepted: 81.0
      modified: 5.4
      removed: 4.7
      over_annotated: 4.2
      undecided: 2.6
      over_annotated_general: 2.2
    EC2GO:
      terms: 598
      accepted: 85.3
      modified: 3.8
      over_annotated: 3.7
      removed: 3.7
      undecided: 2.8
      over_annotated_general: 0.3
      unassessed: 0.2
      specific_of_accepted: 0.2
    ARBA:
      terms: 592
      accepted: 62.0
      over_annotated_general: 15.4
      modified: 7.3
      general_of_accepted: 7.1
      over_annotated: 2.7
      removed: 2.2
      unassessed: 1.5
      undecided: 1.0
      specific_of_accepted: 0.8
    Rhea2GO:
      terms: 491
      accepted: 90.0
      over_annotated: 3.1
      removed: 2.9
      modified: 2.2
      undecided: 0.8
      over_annotated_general: 0.4
      specific_of_accepted: 0.4
      unassessed: 0.2
    UniProtKB-SubCell2GO:
      terms: 417
      accepted: 91.4
      over_annotated_general: 4.3
      modified: 2.9
      over_annotated: 0.5
      undecided: 0.5
      removed: 0.5
    UniPathway2GO:
      terms: 278
      accepted: 93.2
      undecided: 2.5
      over_annotated: 1.8
      removed: 1.8
      modified: 0.4
      over_annotated_general: 0.4
    GO inter-ontology links:
      terms: 66
      accepted: 77.3
      removed: 7.6
      over_annotated: 4.5
      modified: 4.5
      over_annotated_general: 3.0
      undecided: 1.5
      general_of_accepted: 1.5
    IDA:
      terms: 51
      accepted: 90.2
      modified: 5.9
      removed: 2.0
      over_annotated: 2.0
    IPI:
      terms: 27
      accepted: 85.2
      removed: 11.1
      over_annotated: 3.7
    EXP:
      terms: 20
      accepted: 100.0
    ISS:
      terms: 16
      accepted: 93.8
      undecided: 6.2
    IMP:
      terms: 11
      accepted: 100.0
    NAS:
      terms: 1
      accepted: 100.0
  goa_errors_shared_by_ncbi:
    over_annotated via ARBA:
      ncbi_no_terms_in_aspect: 16
      ncbi_more_specific: 68
      ncbi_avoided: 12
      ncbi_same_term: 9
      ncbi_more_general_only: 2
    over_annotated via EC2GO:
      ncbi_no_terms_in_aspect: 9
      ncbi_same_term: 8
      ncbi_more_general_only: 6
      ncbi_avoided: 1
    over_annotated via GO inter-ontology links:
      ncbi_avoided: 1
      ncbi_more_specific: 4
    over_annotated via IDA:
      ncbi_no_terms_in_aspect: 1
    over_annotated via IPI:
      ncbi_same_term: 1
    over_annotated via InterPro2GO:
      ncbi_same_term: 185
      ncbi_more_specific: 288
      ncbi_no_terms_in_aspect: 71
      ncbi_avoided: 58
      ncbi_more_general_only: 6
    over_annotated via Rhea2GO:
      ncbi_more_specific: 1
      ncbi_avoided: 3
      ncbi_more_general_only: 7
      ncbi_same_term: 5
      ncbi_no_terms_in_aspect: 1
    over_annotated via TreeGrafter:
      ncbi_no_terms_in_aspect: 26
      ncbi_same_term: 22
      ncbi_avoided: 26
      ncbi_more_general_only: 7
      ncbi_more_specific: 14
    over_annotated via UniPathway2GO:
      ncbi_no_terms_in_aspect: 1
      ncbi_avoided: 2
      ncbi_same_term: 3
    over_annotated via UniProtKB-SubCell2GO:
      ncbi_no_terms_in_aspect: 8
      ncbi_same_term: 6
      ncbi_avoided: 3
      ncbi_more_specific: 3
    over_annotated via UniRule:
      ncbi_more_specific: 44
      ncbi_avoided: 37
      ncbi_same_term: 38
      ncbi_no_terms_in_aspect: 17
      ncbi_more_general_only: 4
    removed via ARBA:
      ncbi_avoided: 6
      ncbi_no_terms_in_aspect: 4
      ncbi_same_term: 1
      ncbi_more_specific: 2
    removed via EC2GO:
      ncbi_no_terms_in_aspect: 7
      ncbi_same_term: 7
      ncbi_more_general_only: 2
      ncbi_avoided: 6
    removed via GO inter-ontology links:
      ncbi_no_terms_in_aspect: 1
      ncbi_avoided: 3
      ncbi_more_specific: 1
    removed via IDA:
      ncbi_avoided: 1
    removed via IPI:
      ncbi_avoided: 2
      ncbi_no_terms_in_aspect: 1
    removed via InterPro2GO:
      ncbi_avoided: 21
      ncbi_same_term: 66
      ncbi_more_general_only: 4
      ncbi_no_terms_in_aspect: 19
      ncbi_more_specific: 5
    removed via Rhea2GO:
      ncbi_no_terms_in_aspect: 3
      ncbi_same_term: 3
      ncbi_avoided: 5
      ncbi_more_general_only: 1
      ncbi_more_specific: 2
    removed via TreeGrafter:
      ncbi_no_terms_in_aspect: 27
      ncbi_more_general_only: 10
      ncbi_avoided: 32
      ncbi_same_term: 1
    removed via UniPathway2GO:
      ncbi_more_specific: 1
      ncbi_no_terms_in_aspect: 3
      ncbi_same_term: 1
    removed via UniProtKB-SubCell2GO:
      ncbi_no_terms_in_aspect: 1
      ncbi_same_term: 1
    removed via UniRule:
      ncbi_no_terms_in_aspect: 7
      ncbi_avoided: 17
      ncbi_same_term: 8
      ncbi_more_general_only: 4
  core_function_coverage:
    BP goa_all:
      missed: 241
      covered: 718
      general_only: 83
    BP goa_electronic:
      missed: 257
      covered: 700
      general_only: 85
    BP ncbi:
      missed: 519
      covered: 378
      general_only: 145
    BP ncbi_vs_goa_electronic:
      missed/missed: 217
      missed/covered: 266
      missed/general_only: 36
      covered/missed: 31
      general_only/general_only: 45
      general_only/covered: 91
      covered/covered: 343
      general_only/missed: 9
      covered/general_only: 4
    MF goa_all:
      general_only: 51
      covered: 756
      missed: 110
    MF goa_electronic:
      general_only: 55
      covered: 743
      missed: 119
    MF ncbi:
      missed: 341
      covered: 466
      general_only: 110
    MF ncbi_vs_goa_electronic:
      missed/general_only: 26
      missed/covered: 211
      missed/missed: 104
      covered/covered: 452
      general_only/covered: 80
      general_only/missed: 8
      general_only/general_only: 22
      covered/missed: 7
      covered/general_only: 7
pipeline_variants:
  NCBI:
    genes_with_go: 3413
    reviewed_terms: 2078
    review_correct_pct: 69.5
    review_modified_pct: 6.1
    review_over_annotated_other_pct: 4.5
    review_too_general_pct: 4.7
    review_unassessed_pct: 12.0
    review_wrong_pct: 3.3
    core_mf_covered_pct: 50.8
    core_bp_covered_pct: 36.3
    experimental_supported_pct: 54.4
    experimental_recall_pct: 12.2
  GOA InterPro2GO:
    genes_with_go: 3328
    reviewed_terms: 2690
    review_correct_pct: 62.5
    review_modified_pct: 9.3
    review_over_annotated_other_pct: 5.4
    review_too_general_pct: 17.2
    review_unassessed_pct: 1.4
    review_wrong_pct: 4.3
    core_mf_covered_pct: 53.9
    core_bp_covered_pct: 37.4
    experimental_supported_pct: 56.4
    experimental_recall_pct: 12.2
  GOA InterPro2GO + TreeGrafter + IBA:
    genes_with_go: 3645
    reviewed_terms: 3641
    review_correct_pct: 66.6
    review_modified_pct: 8.4
    review_over_annotated_other_pct: 5.2
    review_too_general_pct: 12.9
    review_unassessed_pct: 1.9
    review_wrong_pct: 5.1
    core_mf_covered_pct: 63.9
    core_bp_covered_pct: 51.0
    experimental_supported_pct: 51.1
    experimental_recall_pct: 19.7
  GOA electronic without ARBA:
    genes_with_go: 3836
    reviewed_terms: 4710
    review_correct_pct: 69.0
    review_modified_pct: 7.7
    review_over_annotated_other_pct: 5.0
    review_too_general_pct: 11.3
    review_unassessed_pct: 2.2
    review_wrong_pct: 4.8
    core_mf_covered_pct: 80.3
    core_bp_covered_pct: 66.2
    experimental_supported_pct: 53.4
    experimental_recall_pct: 38.1
  GOA electronic:
    genes_with_go: 3868
    reviewed_terms: 4926
    review_correct_pct: 68.4
    review_modified_pct: 7.9
    review_over_annotated_other_pct: 5.0
    review_too_general_pct: 11.6
    review_unassessed_pct: 2.3
    review_wrong_pct: 4.8
    core_mf_covered_pct: 81.0
    core_bp_covered_pct: 67.2
    experimental_supported_pct: 57.7
    experimental_recall_pct: 45.6
  "NCBI \u222A GOA InterPro2GO + TreeGrafter + IBA":
    genes_with_go: 4087
    reviewed_terms: 4149
    review_correct_pct: 64.7
    review_modified_pct: 7.7
    review_over_annotated_other_pct: 4.6
    review_too_general_pct: 11.4
    review_unassessed_pct: 7.1
    review_wrong_pct: 4.5
    core_mf_covered_pct: 68.5
    core_bp_covered_pct: 56.9
    experimental_supported_pct: 52.3
    experimental_recall_pct: 21.1
level3_experimental:
  loci_with_experimental_go: 57
  terms_vs_experimental_pct:
    GOA electronic:
      terms: 208
      not_supported: 40.4
      exact: 30.8
      general_of_experimental: 26.9
      specific_of_experimental: 1.9
    GOA electronic [F]:
      terms: 141
      general_of_experimental: 33.3
      not_supported: 32.6
      exact: 31.2
      specific_of_experimental: 2.8
    NCBI:
      terms: 57
      not_supported: 43.9
      exact: 28.1
      general_of_experimental: 26.3
      specific_of_experimental: 1.8
    NCBI [F]:
      terms: 41
      not_supported: 36.6
      general_of_experimental: 31.7
      exact: 29.3
      specific_of_experimental: 2.4
    GOA electronic [P]:
      terms: 41
      not_supported: 58.5
      exact: 22.0
      general_of_experimental: 19.5
    GOA electronic [C]:
      terms: 26
      not_supported: 53.8
      exact: 42.3
      general_of_experimental: 3.8
    NCBI [P]:
      terms: 13
      not_supported: 61.5
      exact: 30.8
      general_of_experimental: 7.7
    NCBI [C]:
      terms: 3
      not_supported: 66.7
      general_of_experimental: 33.3
  experimental_terms_recalled:
    GOA electronic:
      covered: 67
      missed: 51
      general_only: 29
      covered_pct: 45.6
    GOA electronic [C]:
      missed: 10
      covered: 11
      covered_pct: 52.4
    GOA electronic [F]:
      covered: 47
      missed: 25
      general_only: 23
      covered_pct: 49.5
    GOA electronic [P]:
      missed: 16
      general_only: 6
      covered: 9
      covered_pct: 29.0
    NCBI:
      general_only: 17
      missed: 112
      covered: 18
      covered_pct: 12.2
    NCBI [C]:
      missed: 20
      general_only: 1
      covered_pct: 0.0
    NCBI [F]:
      general_only: 15
      missed: 66
      covered: 14
      covered_pct: 14.7
    NCBI [P]:
      missed: 26
      covered: 4
      general_only: 1
      covered_pct: 12.9
