assembly: GCF_000007565.2_ASM756v2
ncbi_source: ftp
annotation_release: GCF_000007565.2-RS_2025_02_17
annotation_release_date: '2025-02-17'
annotation_pipeline: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) 6.9
ncbi_gaf_date_generated: '2025-06-12'
ncbi_gaf_go_version: '2025-03-16'
inputs_fetched_utc:
  ncbi.gaf.gz: '2026-10-18T23:21:16+00:00'
  feature_table.txt.gz: '2026-10-18T23:21:16+00:00'
  goa.tsv: '2026-10-18T23:20:49+00:00'
  uniprot_seq.tsv: '2026-10-20T23:34:39+00:00'
taxon: 160488
proteome: UP000000556
gene_models:
  feature_counts:
    CDS:with_protein: 5487
    CDS:without_protein: 132
    gene:RNase_P_RNA: 1
    gene:SRP_RNA: 1
    gene:ncRNA: 1
    gene:protein_coding: 5487
    gene:pseudogene: 132
    gene:rRNA: 22
    gene:tRNA: 74
    gene:tmRNA: 1
    ncRNA:RNase_P_RNA: 1
    ncRNA:SRP_RNA: 1
    ncRNA:other: 1
    'rRNA:': 22
    'tRNA:': 74
    'tmRNA:': 1
  loci_total: 5660
  loci_with_refseq_protein: 5487
  loci_with_uniprot_entry: 5563
  loci_in_both: 5390
  loci_refseq_only: 97
  loci_uniprot_only: 173
  uniprot_entries_joined_by_sequence: 0
  uniprot_entries_without_locus_tag: 0
  wp_shared_by_multiple_loci: 20
  uniprot_entries_lacking_refseq_xref: 1007
coverage:
  loci_compared: 5390
  with_ncbi_go: 3413
  with_goa_go: 3871
  with_goa_iea_go: 3868
  with_both: 3091
  ncbi_annotations: 8264
  goa_annotations: 17246
union_models:
  mode: none
ncbi_terms_by_source_vs_goa:
  ArchId (CDD/SPARCLE):
    exact: 2117
    other_side_no_aspect: 723
    only: 557
    other_more_specific: 157
    other_more_general: 251
  BlastRule:
    exact: 46
    other_side_no_aspect: 16
  HMM:NF:
    exact: 1627
    only: 120
    other_side_no_aspect: 127
    other_more_specific: 39
    other_more_general: 22
  HMM:TIGR:
    other_more_specific: 100
    only: 248
    exact: 1771
    other_more_general: 136
    other_side_no_aspect: 183
  cluster:
    exact: 7
    other_side_no_aspect: 2
    only: 2
    other_more_general: 1
  none:
    exact: 3
    other_side_no_aspect: 8
    other_more_general: 1
goa_terms_by_source_vs_ncbi:
  ARBA:
    exact: 465
    other_side_no_aspect: 457
    only: 207
    other_more_specific: 282
    other_more_general: 183
  EC2GO:
    exact: 626
    other_more_specific: 52
    other_more_general: 206
    other_side_no_aspect: 227
    only: 123
  EXP:
    other_more_general: 4
    other_side_no_aspect: 15
    exact: 5
    only: 4
    other_more_specific: 1
  GO inter-ontology links:
    other_more_general: 107
    only: 152
    other_side_no_aspect: 153
    exact: 15
    other_more_specific: 5
  IDA:
    only: 18
    other_more_general: 8
    other_side_no_aspect: 20
    exact: 10
    other_more_specific: 1
  IEP:
    other_side_no_aspect: 1
  IMP:
    only: 10
    other_more_general: 3
    other_side_no_aspect: 12
  IPI:
    only: 11
    other_more_general: 5
    other_side_no_aspect: 34
    exact: 1
  ISS:
    only: 6
    other_side_no_aspect: 7
    exact: 4
  InterPro2GO:
    exact: 4850
    other_more_general: 287
    other_more_specific: 1170
    other_side_no_aspect: 1776
    only: 922
  NAS:
    other_side_no_aspect: 1
  Rhea2GO:
    other_more_general: 127
    exact: 480
    other_more_specific: 14
    other_side_no_aspect: 90
    only: 101
  TreeGrafter:
    other_side_no_aspect: 2000
    other_more_general: 780
    exact: 1377
    only: 773
    other_more_specific: 196
  UniPathway2GO:
    other_more_general: 45
    only: 70
    exact: 179
    other_side_no_aspect: 76
    other_more_specific: 8
  UniProtKB-SubCell2GO:
    other_side_no_aspect: 854
    other_more_general: 237
    only: 61
    exact: 273
    other_more_specific: 102
  UniRule:
    other_more_general: 281
    other_more_specific: 531
    other_side_no_aspect: 1148
    exact: 1910
    only: 939