miRNA_Family	Mature_miRNA_5to3	THLAR_Locus	Tarvense_Gene_ID	NCBI_Protein_ID	UniProt_Accession	UniProt_Protein_Name	ATH_Ortholog_Module	CDS_Start	CDS_End	Allen_Score	Total_Mispair	Seed_Mispair	Pred_Cleav	Max_TPM_9Tissues	Mean_TPM_9Tissues	Peak_Tissue	Target_Site_5to3	Alignment
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS12133	Tarvense_25974	CAH2057297.1	A0AAU9S849	Uncharacterized protein	Predicted pennycress CDS target	353	372	1.0	1	0	Yes	0.0	0.0	cauline_leaf	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS13245	Tarvense_20544	CAH2058407.1	A0AAU9S4J6	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	755	774	1.0	1	0	Yes	36.2	15.0	open_flowers	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS16487	Tarvense_04100	CAH2066308.1	A0AAU9SHU7	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	959	978	1.0	1	0	Yes	11.13	8.14	cauline_leaf	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS17655	Tarvense_02614	CAH2063751.1	A0AAU9SHM7	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	677	696	1.0	1	0	Yes	2.53	1.44	open_flowers	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS22078	Tarvense_25397	CAH2070435.1	A0AAU9SUB7	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	902	921	1.0	1	0	Yes	8.56	3.03	inflorescence	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS686	Tarvense_10790	CAH2034056.1	A0AAU9R598	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	1052	1071	1.0	1	0	Yes	39.08	18.49	green_young_silique	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS687	Tarvense_10791	CAH2034057.1	A0AAU9R5F0	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	1079	1098	1.0	1	0	Yes	28.1	8.67	open_flowers	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR156	TGACAGAAGAGAGTGAGCAC	TAV2_LOCUS8053	Tarvense_12675	CAH2046979.1	A0AAU9RQH6	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	1007	1026	1.0	1	0	Yes	39.05	13.85	green_young_silique	GTGCTCTCTCTCTTCTGTCA	||||||x|||||||||||||
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS13245	Tarvense_20544	CAH2058407.1	A0AAU9S4J6	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	755	775	2.0	1	1	Yes	36.2	15.0	open_flowers	GTGCTCTCTCTCTTCTGTCAA	|||||||||x|||||||||||
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS17655	Tarvense_02614	CAH2063751.1	A0AAU9SHM7	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	677	697	2.0	1	1	Yes	2.53	1.44	open_flowers	GTGCTCTCTCTCTTCTGTCAA	|||||||||x|||||||||||
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS686	Tarvense_10790	CAH2034056.1	A0AAU9R598	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	1052	1072	2.0	1	1	Yes	39.08	18.49	green_young_silique	GTGCTCTCTCTCTTCTGTCAA	|||||||||x|||||||||||
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS687	Tarvense_10791	CAH2034057.1	A0AAU9R5F0	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	1079	1099	2.0	1	1	Yes	28.1	8.67	open_flowers	GTGCTCTCTCTCTTCTGTCAA	|||||||||x|||||||||||
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS8053	Tarvense_12675	CAH2046979.1	A0AAU9RQH6	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	1007	1027	2.0	1	1	Yes	39.05	13.85	green_young_silique	GTGCTCTCTCTCTTCTGTCAA	|||||||||x|||||||||||
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS12133	Tarvense_25974	CAH2057297.1	A0AAU9S849	Uncharacterized protein	Predicted pennycress CDS target	353	373	3.0	2	1	Yes	0.0	0.0	cauline_leaf	GTGCTCTCTCTCTTCTGTCAT	|||||||||x||||||||||x
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS16487	Tarvense_04100	CAH2066308.1	A0AAU9SHU7	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	959	979	3.0	2	1	Yes	11.13	8.14	cauline_leaf	GTGCTCTCTCTCTTCTGTCAT	|||||||||x||||||||||x
miR157	TTGACAGAAGATAGAGAGCAC	TAV2_LOCUS22078	Tarvense_25397	CAH2070435.1	A0AAU9SUB7	SBP-type domain-containing protein	SPL2/3/4/5/6/9/10/11/13/15 (Squamosa promoter-binding-like; vegetative-to-reproductive phase transition & seed oil/mucilage regulation)	902	922	3.0	2	1	Yes	8.56	3.03	inflorescence	GTGCTCTCTCTCTTCTGTCAT	|||||||||x||||||||||x
miR159	TTTGGATTGAAGGGAGCTCTA	TAV2_LOCUS19513	Tarvense_00784	CAH2069914.1	A0AAU9SN65	Uncharacterized protein	MYB33/MYB65/SPEAR2 (GAMYB-like transcription factor; anther/pollen & seed development)	1313	1333	3.0	2	1	Yes	0.17	0.03	inflorescence	AAGAGCTCCCTTCAAACCAAA	x||||||||||||||x|||||
miR160	TGCCTGGCTCCCTGTATGCCA	TAV2_LOCUS15436	Tarvense_03322	CAH2067766.1	A0AAU9SP38	Auxin response factor	ARF10/ARF16/ARF17 (Auxin response factor; root cap, seed germination & silique development)	1428	1448	0.5	1	0	Yes	19.62	12.49	green_young_silique	TGGCATGCAGGGAGCCAGGCA	||||||o||||||||||||||
miR160	TGCCTGGCTCCCTGTATGCCA	TAV2_LOCUS19535	Tarvense_07121	CAH2074361.1	A0AAU9T051	Auxin response factor	ARF10/ARF16/ARF17 (Auxin response factor; root cap, seed germination & silique development)	1260	1280	0.5	1	0	Yes	4.02	2.44	shoot_1w_old	TGGCATGCAGGGAGCCAGGCA	||||||o||||||||||||||
miR160	TGCCTGGCTCCCTGTATGCCA	TAV2_LOCUS4572	Tarvense_27046	CAH2041871.1	A0AAU9RG42	Auxin response factor	ARF10/ARF16/ARF17 (Auxin response factor; root cap, seed germination & silique development)	1361	1381	1.5	2	0	Yes	0.0	0.0	cauline_leaf	CGGCATGCAGGGAGCCAGGCA	x|||||o||||||||||||||
miR160	TGCCTGGCTCCCTGTATGCCA	TAV2_LOCUS13658	Tarvense_19133	CAH2060293.1	A0AAU9S5Q0	Auxin response factor	ARF10/ARF16/ARF17 (Auxin response factor; root cap, seed germination & silique development)	1356	1376	2.0	2	0	Yes	58.03	33.51	cauline_leaf	AGGGATACAGGGAGCCAGGCA	x||x|||||||||||||||||
miR160	TGCCTGGCTCCCTGTATGCCA	TAV2_LOCUS23883	Tarvense_16253	CAH2077514.1	A0AAU9T4H6	Auxin response factor	ARF10/ARF16/ARF17 (Auxin response factor; root cap, seed germination & silique development)	1332	1352	2.5	3	0	Yes	64.37	30.45	cauline_leaf	GGGTTTACAGGGAGCCAGGCA	x||ox||||||||||||||||
miR161	TCAATGCATTGAAAGTGACTA	TAV2_LOCUS5095	Tarvense_11818	CAH2048133.1	A0AAU9RSK5	Uncharacterized protein	PPR-P clade (AT1G06580/AT1G62590/AT1G62910/AT1G63150; secondary phasiRNA trigger)	962	982	1.0	1	0	Yes	7.69	5.89	open_flowers	TAGTCACGTTCAATGCATTGA	|||||||x|||||||||||||
miR161	TCAATGCATTGAAAGTGACTA	TAV2_LOCUS6988	Tarvense_11880	CAH2048072.1	A0AAU9RU77	Pentatricopeptide repeat-containing protein	PPR-P clade (AT1G06580/AT1G62590/AT1G62910/AT1G63150; secondary phasiRNA trigger)	1610	1630	1.5	2	0	Yes	5.97	4.74	cauline_leaf	TAGTTACGTTCAATGCATTGA	||||o||x|||||||||||||
miR161	TCAATGCATTGAAAGTGACTA	TAV2_LOCUS2549	Tarvense_22242	CAH2038066.1	A0AAU9RFF7	Protein kinase domain-containing protein	Predicted pennycress CDS target	1343	1363	2.0	2	1	Yes	73.28	49.0	rosette_leaf	TCGTCACTTTCAATGTATTGA	|x|||||||||||||o|||||
miR161	TCAATGCATTGAAAGTGACTA	TAV2_LOCUS4999	Tarvense_11893	CAH2048060.1	A0AAU9RW32	Uncharacterized protein	PPR-P clade (AT1G06580/AT1G62590/AT1G62910/AT1G63150; secondary phasiRNA trigger)	986	1006	2.5	3	2	Yes	3.83	2.69	green_seed	TGGTCACTTTTAGTGCATTGA	|o||||||||o|o||||||||
miR161	TCAATGCATTGAAAGTGACTA	TAV2_LOCUS5004	Tarvense_11895	CAH2048058.1	A0AAU9RSC9	Pentatricopeptide repeat-containing protein	PPR-P clade (AT1G06580/AT1G62590/AT1G62910/AT1G63150; secondary phasiRNA trigger)	731	751	2.5	3	2	Yes	7.36	6.18	green_seed	TGGTCACTTTTAGTGCATTGA	|o||||||||o|o||||||||
miR161	TCAATGCATTGAAAGTGACTA	TAV2_LOCUS5538	Tarvense_11776	CAH2048202.1	A0AAU9RR44	Pentatricopeptide repeat-containing protein	PPR-P clade (AT1G06580/AT1G62590/AT1G62910/AT1G63150; secondary phasiRNA trigger)	332	352	2.5	3	1	Yes	4.21	2.53	inflorescence	TAGTTACGTTCAGTGCATTGA	||||o||x||||o||||||||
miR161	TCAATGCATTGAAAGTGACTA	TAV2_LOCUS6323	Tarvense_11798	CAH2048161.1	A0AAU9RV34	Pentatricopeptide repeat-containing protein, mitochondrial	PPR-P clade (AT1G06580/AT1G62590/AT1G62910/AT1G63150; secondary phasiRNA trigger)	1205	1225	3.0	2	1	Yes	4.62	3.68	green_seed	TAGTCACGTTCAATGCATTAA	|||||||x|||||||||||x|
miR162	TCGATAAACCTCTGCATCCAG	TAV2_LOCUS3068	Tarvense_21196	CAH2039182.1	A0AAU9RFA2	Uncharacterized protein	DCL1 (AT1G01040; Endoribonuclease Dicer-like 1; miRNA biogenesis homeostatic feedback)	3073	3094	2.0	1	0	Yes	91.37	44.87	inflorescence	CTGGATGCAGAGGTATTATCGA	||||||||||||||-|||||||
miR164	TGGAGAAGCAGGGCACGTGCA	TAV2_LOCUS20428	Tarvense_06736	CAH2073627.1	A0AAU9SW16	NAC domain-containing protein	CUC1/CUC2/NAC1/ORE1 (NAC021/NAC054/NAC079/NAC092/NAC098/NAC100; meristem boundary, carpel/ovule & leaf senescence)	572	592	1.5	2	0	Yes	48.52	9.34	green_seed	TTTACGTGCCCTGCTTCTCCA	|xo||||||||||||||||||
miR164	TGGAGAAGCAGGGCACGTGCA	TAV2_LOCUS5185	Tarvense_14569	CAH2044025.1	A0AAU9RIK5	NAC domain-containing protein	CUC1/CUC2/NAC1/ORE1 (NAC021/NAC054/NAC079/NAC092/NAC098/NAC100; meristem boundary, carpel/ovule & leaf senescence)	632	652	1.5	2	0	Yes	118.54	23.4	green_seed	TCTACGTGCCCTGCTTCTCCA	|xo||||||||||||||||||
miR164	TGGAGAAGCAGGGCACGTGCA	TAV2_LOCUS11328	Tarvense_09105	CAH2053862.1	A0AAU9S0T0	NAC domain-containing protein	CUC1/CUC2/NAC1/ORE1 (NAC021/NAC054/NAC079/NAC092/NAC098/NAC100; meristem boundary, carpel/ovule & leaf senescence)	617	637	2.0	2	0	Yes	44.04	5.86	root_1w_old	AGCAAGTGCCCTGCTTCTCCA	x|||x||||||||||||||||
miR164	TGGAGAAGCAGGGCACGTGCA	TAV2_LOCUS2785	Tarvense_10164	CAH2033411.1	A0AAU9R697	NAC domain-containing protein	CUC1/CUC2/NAC1/ORE1 (NAC021/NAC054/NAC079/NAC092/NAC098/NAC100; meristem boundary, carpel/ovule & leaf senescence)	662	682	2.0	2	0	Yes	0.01	0.0	cauline_leaf	AGCAGGTGCCCTGCTTCTCCA	x|||x||||||||||||||||
miR164	TGGAGAAGCAGGGCACGTGCA	TAV2_LOCUS11048	Tarvense_08892	CAH2053655.1	A0AAU9S4F5	NAC domain-containing protein	CUC1/CUC2/NAC1/ORE1 (NAC021/NAC054/NAC079/NAC092/NAC098/NAC100; meristem boundary, carpel/ovule & leaf senescence)	692	712	3.0	3	2	Yes	519.89	246.85	shoot_1w_old	AGCACGTGTCCTGTTTCTCCA	x|||||||o||||o|||||||
miR164	TGGAGAAGCAGGGCACGTGCA	TAV2_LOCUS21106	Tarvense_00915	CAH2070034.1	A0AAU9SNH5	NAC domain-containing protein	CUC1/CUC2/NAC1/ORE1 (NAC021/NAC054/NAC079/NAC092/NAC098/NAC100; meristem boundary, carpel/ovule & leaf senescence)	764	784	3.0	3	2	Yes	3.74	0.71	inflorescence	AGCACGTGTCCTGTTTCTCCA	x|||||||o||||o|||||||
miR165	TCGGACCAGGCTTCATCCCCC	TAV2_LOCUS13913	Tarvense_19840	CAH2059376.1	A0AAU9SBY4	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	572	592	2.5	3	0	Yes	50.48	37.07	inflorescence	TTGGGATGAAGCCTGGTCCGG	xx||||||||||||||||||o
miR165	TCGGACCAGGCTTCATCCCCC	TAV2_LOCUS15361	Tarvense_01448	CAH2065370.1	A0AAU9SL01	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	548	568	2.5	3	0	Yes	26.63	13.64	green_seed	CTGGGATGAAGCCTGGTCCGG	xx||||||||||||||||||o
miR165	TCGGACCAGGCTTCATCCCCC	TAV2_LOCUS21990	Tarvense_00158	CAH2069310.1	A0AAU9SL93	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	551	571	2.5	3	0	Yes	72.33	39.19	root_1w_old	CTGGGATGAAGCCTGGTCCGG	xx||||||||||||||||||o
miR165	TCGGACCAGGCTTCATCCCCC	TAV2_LOCUS23090	Tarvense_15958	CAH2077127.1	A0AAU9SZ23	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	545	565	2.5	3	0	Yes	25.49	12.17	green_young_silique	CTGGGATGAAGCCTGGTCCGG	xx||||||||||||||||||o
miR165	TCGGACCAGGCTTCATCCCCC	TAV2_LOCUS3035	Tarvense_11094	CAH2034521.1	A0AAU9RAT6	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	575	595	2.5	3	0	Yes	94.53	30.78	seed_pod	TTGGGATGAAGCCTGGTCCGG	xx||||||||||||||||||o
miR166	TCGGACCAGGCTTCATTCCCC	TAV2_LOCUS3522	Tarvense_23254	CAH2036462.1	A0AAU9RAK0	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	551	571	2.5	3	0	Yes	46.56	29.65	inflorescence	CTGGAATGAAGCCTGGTCCGG	xx||||||||||||||||||o
miR166	TCGGACCAGGCTTCATTCCCC	TAV2_LOCUS13913	Tarvense_19840	CAH2059376.1	A0AAU9SBY4	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	572	592	3.0	4	0	Yes	50.48	37.07	inflorescence	TTGGGATGAAGCCTGGTCCGG	xx||o|||||||||||||||o
miR166	TCGGACCAGGCTTCATTCCCC	TAV2_LOCUS15361	Tarvense_01448	CAH2065370.1	A0AAU9SL01	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	548	568	3.0	4	0	Yes	26.63	13.64	green_seed	CTGGGATGAAGCCTGGTCCGG	xx||o|||||||||||||||o
miR166	TCGGACCAGGCTTCATTCCCC	TAV2_LOCUS21990	Tarvense_00158	CAH2069310.1	A0AAU9SL93	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	551	571	3.0	4	0	Yes	72.33	39.19	root_1w_old	CTGGGATGAAGCCTGGTCCGG	xx||o|||||||||||||||o
miR166	TCGGACCAGGCTTCATTCCCC	TAV2_LOCUS23090	Tarvense_15958	CAH2077127.1	A0AAU9SZ23	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	545	565	3.0	4	0	Yes	25.49	12.17	green_young_silique	CTGGGATGAAGCCTGGTCCGG	xx||o|||||||||||||||o
miR166	TCGGACCAGGCTTCATTCCCC	TAV2_LOCUS3035	Tarvense_11094	CAH2034521.1	A0AAU9RAT6	Uncharacterized protein	PHB/PHV/REV/ATHB-8/ATHB-15 (HD-ZIP III transcription factors; adaxial-abaxial leaf polarity, vascular & ovule integument patterning)	575	595	3.0	4	0	Yes	94.53	30.78	seed_pod	TTGGGATGAAGCCTGGTCCGG	xx||o|||||||||||||||o
miR167	TGAAGCTGCCAGCATGATCTA	TAV2_LOCUS16836	Tarvense_04539	CAH2065606.1	A0AAU9SGH2	PB1 domain-containing protein	ARF6/ARF8 (AT1G30330/AT5G37020; Auxin response factor; anther dehiscence, ovule development & jasmonate/auxin crosstalk)	2181	2201	3.5	3	1	Yes	102.75	48.74	open_flowers	TAGATCAGGCTGGCAGCTTGT	|||||||x|||||||||||xx
miR167	TGAAGCTGCCAGCATGATCTA	TAV2_LOCUS23322	Tarvense_18807	CAH2079590.1	A0AAU9T5K7	PB1 domain-containing protein	ARF6/ARF8 (AT1G30330/AT5G37020; Auxin response factor; anther dehiscence, ovule development & jasmonate/auxin crosstalk)	2175	2195	3.5	3	1	Yes	86.31	37.28	open_flowers	TAGATCAGGCTGGCAGCTTGT	|||||||x|||||||||||xx
miR171	TTGAGCCGTGCCAATATCACG	TAV2_LOCUS20261	Tarvense_00019	CAH2069084.1	A0AAU9SKW7	Scarecrow-like protein 6	SCL6/SCL15/SCL22/SCL27 (HAM1-3 GRAS family transcription factors; shoot meristem maintenance & chlorophyll biosynthesis)	666	686	3.0	3	1	Yes	63.09	23.97	rosette_leaf	GGGGATATTGGCGCGGCTCAA	x|x|||||||||o||||||||
miR171	TTGAGCCGTGCCAATATCACG	TAV2_LOCUS24000	Tarvense_15585	CAH2076383.1	A0AAU9SZM5	Scarecrow-like protein 15	SCL6/SCL15/SCL22/SCL27 (HAM1-3 GRAS family transcription factors; shoot meristem maintenance & chlorophyll biosynthesis)	411	431	3.0	2	1	No	16.88	7.74	seed_pod	CGTGATTTTGTCACGGCTCAA	||||||x|||x||||||||||
miR171	TTGAGCCGTGCCAATATCACG	TAV2_LOCUS4517	Tarvense_26991	CAH2041753.1	A0AAU9RLB9	Scarecrow-like protein 6	SCL6/SCL15/SCL22/SCL27 (HAM1-3 GRAS family transcription factors; shoot meristem maintenance & chlorophyll biosynthesis)	660	680	3.0	3	1	Yes	0.0	0.0	cauline_leaf	AGGGATATTGGCGCGGCTCAA	x|x|||||||||o||||||||
miR172	AGAATCTTGATGATGCTGCAT	TAV2_LOCUS18783	Tarvense_00216	CAH2069364.1	A0AAU9SIR0	AP2/ERF domain-containing protein	AP2/TOE1/TOE2/TOE3/SMZ/SNZ (AP2-like floral repressors; flowering time, floral organ identity & seed size/oil accumulation)	1292	1312	1.0	1	1	Yes	49.45	14.62	root_1w_old	ATGCAGCATCATCAGGATTCT	||||||||||||||o||||||
miR172	AGAATCTTGATGATGCTGCAT	TAV2_LOCUS23360	Tarvense_15532	CAH2076280.1	A0AAU9T1Q2	AP2/ERF domain-containing protein	AP2/TOE1/TOE2/TOE3/SMZ/SNZ (AP2-like floral repressors; flowering time, floral organ identity & seed size/oil accumulation)	1181	1201	2.0	2	1	Yes	65.67	33.86	root_1w_old	CTGCAGCATCATCAGGATTCT	x|||||||||||||o||||||
miR172	AGAATCTTGATGATGCTGCAT	TAV2_LOCUS12280	Tarvense_19173	CAH2060257.1	A0AAU9S8K1	Uncharacterized protein	TOE1/RAP2-7 homolog (AP2/ERF floral repressor)	104	124	3.0	3	1	Yes	20.25	7.39	shoot_1w_old	CAGCAGCATCATCAGGATTCT	xx||||||||||||o||||||
miR172	AGAATCTTGATGATGCTGCAT	TAV2_LOCUS13511	Tarvense_20263	CAH2058747.1	A0AAU9S9H0	AP2/ERF domain-containing protein	AP2/TOE1/TOE2/TOE3/SMZ/SNZ (AP2-like floral repressors; flowering time, floral organ identity & seed size/oil accumulation)	950	970	3.0	3	1	Yes	25.43	5.68	rosette_leaf	TTGCAGCATCATCAGGATTCC	x|||||||||||||o|||||x
miR172	AGAATCTTGATGATGCTGCAT	TAV2_LOCUS15398	Tarvense_02369	CAH2064089.1	A0AAU9SFF7	AP2/ERF domain-containing protein	AP2/TOE1/TOE2/TOE3/SMZ/SNZ (AP2-like floral repressors; flowering time, floral organ identity & seed size/oil accumulation)	962	982	3.0	3	1	Yes	15.54	3.78	green_seed	TTGCAGCATCATCAGGATTCC	x|||||||||||||o|||||x
miR172	AGAATCTTGATGATGCTGCAT	TAV2_LOCUS5241	Tarvense_15005	CAH2043195.1	A0AAU9RHM9	AP2/ERF domain-containing protein	AP2/TOE1/TOE2/TOE3/SMZ/SNZ (AP2-like floral repressors; flowering time, floral organ identity & seed size/oil accumulation)	1004	1024	3.0	3	1	Yes	7.32	3.26	rosette_leaf	CGGCAGCATCATCAGGATTCT	xx||||||||||||o||||||
miR172	AGAATCTTGATGATGCTGCAT	TAV2_LOCUS9688	Tarvense_09998	CAH2055278.1	A0AAU9S1X3	Tyrosine--tRNA ligase (EC 6.1.1.1) (Tyrosyl-tRNA synthetase)	Predicted pennycress CDS target	507	527	3.0	3	0	Yes	36.39	19.43	shoot_1w_old	AAACATCATCATCAAGATTCT	|xx||x|||||||||||||||
miR319	TTGGACTGAAGGGAGCTCCCT	TAV2_LOCUS20251	Tarvense_04644	CAH2070633.1	A0AAU9SS29	Uncharacterized protein	TCP2/TCP3/TCP4/TCP10/TCP24 (JAW-TCP transcription factors; leaf morphogenesis & LOX2/jasmonic acid biosynthesis)	1281	1301	3.0	3	0	Yes	2.29	1.54	shoot_1w_old	AGAGAGCACCCTTCAGTCCAT	||x||||x||||||||||||x
miR390	AAGCTCAGGAGGGATAGCGCC	TAV2_LOCUS8390	Tarvense_27551	CAH2049740.1	A0AAU9RS65	Leucine-rich repeat-containing N-terminal plant-type domain-containing protein	TAS3 / LRR receptor-like kinase (tasiRNA-ARF3/ARF4 biogenesis pathway)	352	372	3.0	3	0	Yes	0.0	0.0	cauline_leaf	GGCCCGATCCCTCCTGAGCTC	|||x|x||||||||||||||x
miR390	AAGCTCAGGAGGGATAGCGCC	TAV2_LOCUS8392	Tarvense_27548	CAH2049737.1	A0AAU9RS59	Leucine-rich repeat-containing N-terminal plant-type domain-containing protein	TAS3 / LRR receptor-like kinase (tasiRNA-ARF3/ARF4 biogenesis pathway)	349	369	3.0	3	0	Yes	0.0	0.0	cauline_leaf	GGCCCAATCCCTCCTGAGCTC	|||x|x||||||||||||||x
miR393	TCCAAAGGGATCGCATTGATCC	TAV2_LOCUS4099	Tarvense_22252	CAH2038046.1	A0AAU9RGU5	F-box domain-containing protein	TIR1/AFB1/AFB2/AFB3 (AT3G62980/AT4G03190/AT3G26810/AT1G12820; Auxin receptor F-box proteins)	1678	1699	2.0	2	0	Yes	110.84	54.56	rosette_leaf	GAAACAATGCGATCCCTTTGGA	|x|x||||||||||||||||||
miR393	TCCAAAGGGATCGCATTGATCC	TAV2_LOCUS16707	Tarvense_03002	CAH2063015.1	A0AAU9SBX4	F-box domain-containing protein	TIR1/AFB1/AFB2/AFB3 (AT3G62980/AT4G03190/AT3G26810/AT1G12820; Auxin receptor F-box proteins)	1516	1537	2.5	3	0	Yes	108.81	81.62	shoot_1w_old	GAGACAATGCGATCCCTTTGGA	|xox||||||||||||||||||
miR393	TCCAAAGGGATCGCATTGATCC	TAV2_LOCUS7969	Tarvense_13781	CAH2045318.1	A0AAU9RKX6	F-box domain-containing protein	TIR1/AFB1/AFB2/AFB3 (AT3G62980/AT4G03190/AT3G26810/AT1G12820; Auxin receptor F-box proteins)	1543	1564	2.5	3	0	Yes	87.05	53.18	shoot_1w_old	GAGACAATGCGATCCCTTTGGA	|xox||||||||||||||||||
miR393	TCCAAAGGGATCGCATTGATCC	TAV2_LOCUS11771	Tarvense_07925	CAH2052902.1	A0AAU9RV31	BHLH domain-containing protein	bHLH77 (AT3G23690; basic helix-loop-helix transcription factor)	48	69	3.0	4	0	Yes	36.38	26.92	green_young_silique	GGGTCAGAGCGATCCCTTTGGC	||o|||ox|||||||||||||x
miR393	TCCAAAGGGATCGCATTGATCC	TAV2_LOCUS18979	Tarvense_05364	CAH2071821.1	A0AAU9SS77	F-box domain-containing protein	TIR1/AFB1/AFB2/AFB3 (AT3G62980/AT4G03190/AT3G26810/AT1G12820; Auxin receptor F-box proteins)	1672	1693	3.0	3	0	Yes	84.57	38.41	green_young_silique	GAAACCATGCGATCCCTTTGGA	|x|x|x||||||||||||||||
miR395	CTGAAGTGTTTGGGGGAACTC	TAV2_LOCUS14532	Tarvense_19205	CAH2060228.1	A0AAU9S8I4	Integral membrane bound transporter domain-containing protein	SULTR2;1 (AT5G10180; Low-affinity sulfate transporter; root-to-shoot/seed sulfate translocation for sinigrin/glucosinolates)	979	999	1.5	2	0	Yes	93.4	10.92	root_1w_old	GAGTGCCTCCAAACACTTCAG	||||x||o|||||||||||||
miR395	CTGAAGTGTTTGGGGGAACTC	TAV2_LOCUS7508	Tarvense_12925	CAH2046571.1	A0AAU9RRK7	sulfate adenylyltransferase (EC 2.7.7.4)	APS1/APS3/APS4 (AT3G22890/AT4G14680/AT5G43780; ATP sulfurylase; sulfate assimilation for glucosinolate biosynthesis)	973	993	1.5	2	0	Yes	1655.64	313.84	seed_pod	GAGTTCCTCCAAACACTTCAT	|||||||o||||||||||||x
miR395	CTGAAGTGTTTGGGGGAACTC	TAV2_LOCUS21835	Tarvense_06561	CAH2073292.1	A0AAU9SVI0	STAS domain-containing protein	SULTR2;1 (AT5G10180; Low-affinity sulfate transporter; root-to-shoot/seed sulfate translocation for sinigrin/glucosinolates)	41	61	2.5	3	0	Yes	185.08	53.36	rosette_leaf	AAGTTCTCCCAAACACTTCAA	x|||||o|||||||||||||x
miR396	TTCCACAGCTTTCTTGAACTT	TAV2_LOCUS11916	Tarvense_27907	CAH2056701.1	A0AAU9S2D3	Growth-regulating factor	GRF1/2/3/4/7/8/9 (Growth-Regulating Factors; leaf/seed size, cell proliferation & seed oil content)	819	840	2.5	2	0	Yes	0.0	0.0	cauline_leaf	CCGTTCAAGAAAGCCTGTGGAA	xx||||||||||||-|||||||
miR396	TTCCACAGCTTTCTTGAACTT	TAV2_LOCUS13594	Tarvense_19998	CAH2059080.1	A0AAU9S7K7	Growth-regulating factor	GRF1/2/3/4/7/8/9 (Growth-Regulating Factors; leaf/seed size, cell proliferation & seed oil content)	696	717	2.5	2	0	Yes	27.36	11.85	green_seed	CCGTTCAAGAAAGCCTGTGGAA	xx||||||||||||-|||||||
miR396	TTCCACAGCTTTCTTGAACTT	TAV2_LOCUS13892	Tarvense_20831	CAH2057865.1	A0AAU9S9E5	Growth-regulating factor	GRF1/2/3/4/7/8/9 (Growth-Regulating Factors; leaf/seed size, cell proliferation & seed oil content)	300	321	2.5	2	0	Yes	12.93	2.81	green_seed	ACGTTCAAGAAAGCTTGTGGAA	xx||||||||||||-|||||||
miR396	TTCCACAGCTTTCTTGAACTT	TAV2_LOCUS16031	Tarvense_02175	CAH2064275.1	A0AAU9SIN8	Growth-regulating factor	GRF1/2/3/4/7/8/9 (Growth-Regulating Factors; leaf/seed size, cell proliferation & seed oil content)	546	567	2.5	2	0	Yes	93.5	14.33	green_seed	CCGTTCAAGAAAGCCTGTGGAA	xx||||||||||||-|||||||
miR396	TTCCACAGCTTTCTTGAACTT	TAV2_LOCUS19183	Tarvense_00947	CAH2070065.1	A0AAU9SNP5	Growth-regulating factor	GRF1/2/3/4/7/8/9 (Growth-Regulating Factors; leaf/seed size, cell proliferation & seed oil content)	450	471	2.5	2	0	Yes	5.47	1.31	inflorescence	TCGTTCAAGAAAGCATGTGGAA	xx||||||||||||-|||||||
miR396	TTCCACAGCTTTCTTGAACTT	TAV2_LOCUS23382	Tarvense_16868	CAH2078102.1	A0AAU9T6Q2	Growth-regulating factor	GRF1/2/3/4/7/8/9 (Growth-Regulating Factors; leaf/seed size, cell proliferation & seed oil content)	753	774	2.5	2	0	Yes	15.94	6.58	inflorescence	TCGTTCAAGAAAGCATGTGGAA	xx||||||||||||-|||||||
miR396	TTCCACAGCTTTCTTGAACTT	TAV2_LOCUS24911	Tarvense_15478	CAH2076175.1	A0AAU9T2T6	Growth-regulating factor	GRF1/2/3/4/7/8/9 (Growth-Regulating Factors; leaf/seed size, cell proliferation & seed oil content)	780	801	2.5	2	0	Yes	42.22	9.98	green_seed	CCGTTCAAGAAAGCCTGTGGAA	xx||||||||||||-|||||||
miR397	TCATTGAGTGCATCGTTGATG	TAV2_LOCUS14099	Tarvense_20158	CAH2058852.1	A0AAU9S9S2	Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase) (Diphenol oxidase) (Urishiol oxidase)	LAC2/LAC4/LAC17 (AT2G29130/AT2G38080/AT5G60020; Laccases; seed coat/stem lignin biosynthesis & copper homeostasis)	669	689	2.5	3	1	Yes	202.75	38.72	seed_pod	AGTCAATGCTGCACTTAATGA	xo|||||||||||||o|||||
miR397	TCATTGAGTGCATCGTTGATG	TAV2_LOCUS22308	Tarvense_00225	CAH2069373.1	A0AAU9SLN0	laccase (EC 1.10.3.2)	LAC2/LAC4/LAC17 (AT2G29130/AT2G38080/AT5G60020; Laccases; seed coat/stem lignin biosynthesis & copper homeostasis)	723	743	2.5	3	1	Yes	26.62	14.2	shoot_1w_old	AATCAACGCTGCACTTAATGA	xo|||||||||||||o|||||
miR399	TGCCAAAGGAGAGTTGCCCTG	TAV2_LOCUS15095	Tarvense_26030	CAH2062629.1	A0AAU9SCN0	NAC domain-containing protein	PHO2/UBC24 (AT2G33770; Ubiquitin-conjugating E2 enzyme; phosphate starvation signaling)	929	949	3.0	3	1	Yes	0.0	0.0	cauline_leaf	CGGGGCAAATCTTCTTTGGCA	|o||||||x|||o||||||||
miR408	ATGCACTGCCTCTTCCCTGGC	TAV2_LOCUS7377	Tarvense_13579	CAH2045700.1	A0AAU9RL07	Basic blue protein (Plantacyanin)	ARPN/Plantacyanin & Cupredoxins (AT2G02850; copper-binding proteins in pollen tube guidance & electron transport)	5	25	3.0	3	1	Yes	42.61	9.27	green_young_silique	CCAAGGGAAGAGGTAGTGCAT	x|x||||||||||o|||||||
miR817	TCTTGACCTTGTAAGACCCA	TAV2_LOCUS12795	Tarvense_19766	CAH2059507.1	A0AAU9S8G2	Auxin response factor	ARF / Auxin-signaling & Cullin components (Pennycress/Brassicaceae target candidates)	1321	1340	2.0	2	1	Yes	92.61	57.97	shoot_1w_old	AGGGTCTTGCAAGGTCAAGA	x|||||||o|||||||||||
miR817	TCTTGACCTTGTAAGACCCA	TAV2_LOCUS21882	Tarvense_00188	CAH2069337.1	A0AAU9SQV1	Auxin response factor	ARF / Auxin-signaling & Cullin components (Pennycress/Brassicaceae target candidates)	1471	1490	2.0	2	1	Yes	86.41	35.24	seed_pod	AGGGTCTTGCAAGGTCAAGA	x|||||||o|||||||||||
miR817	TCTTGACCTTGTAAGACCCA	TAV2_LOCUS7857	Tarvense_14623	CAH2043921.1	A0AAU9RKD0	Auxin-responsive protein	ARF / Auxin-signaling & Cullin components (Pennycress/Brassicaceae target candidates)	1096	1115	2.0	2	1	Yes	423.88	213.12	rosette_leaf	AGGGTCTTGCAAGGTCAAGA	x|||||||o|||||||||||
miR817	TCTTGACCTTGTAAGACCCA	TAV2_LOCUS15906	Tarvense_04044	CAH2066414.1	A0AAU9SLW1	Cullin family profile domain-containing protein	ARF / Auxin-signaling & Cullin components (Pennycress/Brassicaceae target candidates)	282	301	2.5	3	0	Yes	31.45	21.49	cauline_leaf	TGAGTTTTACAAGGTCAAGT	||x||o|||||||||||||x
miR817	TCTTGACCTTGTAAGACCCA	TAV2_LOCUS12795	Tarvense_19766	CAH2059507.1	A0AAU9S8G2	Auxin response factor	ARF / Auxin-signaling & Cullin components (Pennycress/Brassicaceae target candidates)	1450	1469	3.0	3	1	Yes	92.61	57.97	shoot_1w_old	AAGGTCTTGCAAGGTCAAGA	xx||||||o|||||||||||
miR817	TCTTGACCTTGTAAGACCCA	TAV2_LOCUS16423	Tarvense_02592	CAH2063794.1	A0AAU9SCY3	Protein kinase domain-containing protein	ARF / Auxin-signaling & Cullin components (Pennycress/Brassicaceae target candidates)	252	271	3.0	2	1	Yes	3.88	1.74	inflorescence	TAGGTCTTACATGGTCAAGA	|x|||||||||x||||||||
miR817	TCTTGACCTTGTAAGACCCA	TAV2_LOCUS21882	Tarvense_00188	CAH2069337.1	A0AAU9SQV1	Auxin response factor	ARF / Auxin-signaling & Cullin components (Pennycress/Brassicaceae target candidates)	1273	1292	3.0	3	1	Yes	86.41	35.24	seed_pod	AAGGTCTTGCAAGGTCAAGA	xx||||||o|||||||||||