action	gene	taxon	propagated_term_id	propagated_term_label	graft_node	panther_family	panther_family_name	panther_subfamily	panther_subfamily_name
MARK_AS_OVER_ANNOTATED	A0A2K5UJ34	Macaca fascicularis	GO:0032474	otolith morphogenesis	PTN001275231	PTHR31859	TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER	PTHR31859:SF1	TETRATRICOPEPTIDE REPEAT PROTEIN 39C
MARK_AS_OVER_ANNOTATED	A0A8B6GS20	Mytilus galloprovincialis	GO:0010507	negative regulation of autophagy	PTN000086907	PTHR10807	MYOTUBULARIN-RELATED	PTHR10807:SF73	LD06050P
MARK_AS_OVER_ANNOTATED	DDO	Octopus vulgaris	GO:0005737	cytoplasm	PTN000898250	PTHR11530	D-AMINO ACID OXIDASE	PTHR11530:SF17	RE49860P
MARK_AS_OVER_ANNOTATED	IRE1	Hypocrea jecorina (strain QM6a)	GO:0051082	unfolded protein binding	PTN001017826	PTHR13954	IRE1-RELATED	PTHR13954:SF6	NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE
MARK_AS_OVER_ANNOTATED	IRE1	Hypocrea jecorina (strain QM6a)	GO:0070059	intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress	PTN001017826	PTHR13954	IRE1-RELATED	PTHR13954:SF6	NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE
MARK_AS_OVER_ANNOTATED	K9IMD0	Desmodus rotundus	GO:0019731	antibacterial humoral response	PTN000159979	PTHR11485	TRANSFERRIN	PTHR11485:SF55	LACTOTRANSFERRIN
MARK_AS_OVER_ANNOTATED	K9IWR0	Desmodus rotundus	GO:0043123	positive regulation of canonical NF-kappaB signal transduction	PTN000158030	PTHR11471	TUMOR NECROSIS FACTOR FAMILY MEMBER	PTHR11471:SF31	LYMPHOTOXIN-ALPHA
MARK_AS_OVER_ANNOTATED	K9IWR0	Desmodus rotundus	GO:2001238	positive regulation of extrinsic apoptotic signaling pathway	PTN000158030	PTHR11471	TUMOR NECROSIS FACTOR FAMILY MEMBER	PTHR11471:SF31	LYMPHOTOXIN-ALPHA
MARK_AS_OVER_ANNOTATED	K9J287	Desmodus rotundus	GO:0003677	DNA binding	PTN001684743	PTHR11371	DEOXYRIBONUCLEASE	PTHR11371:SF28	DEOXYRIBONUCLEASE-1-LIKE 1
MARK_AS_OVER_ANNOTATED	NCGR_LOCUS10166	Miscanthus lutarioriparius	GO:0005737	cytoplasm		PTHR21256	HISTIDINOL DEHYDROGENASE HDH	PTHR21256:SF2	HISTIDINE BIOSYNTHESIS TRIFUNCTIONAL PROTEIN
MARK_AS_OVER_ANNOTATED	NCGR_LOCUS10166	Miscanthus lutarioriparius	GO:0005829	cytosol		PTHR21256	HISTIDINOL DEHYDROGENASE HDH	PTHR21256:SF2	HISTIDINE BIOSYNTHESIS TRIFUNCTIONAL PROTEIN
MARK_AS_OVER_ANNOTATED	NCGR_LOCUS10166	Miscanthus lutarioriparius	GO:0009570	chloroplast stroma		PTHR21256	HISTIDINOL DEHYDROGENASE HDH	PTHR21256:SF2	HISTIDINE BIOSYNTHESIS TRIFUNCTIONAL PROTEIN
MARK_AS_OVER_ANNOTATED	NCGR_LOCUS1270	Miscanthus lutarioriparius	GO:0006000	fructose metabolic process	PTN004269459	PTHR11556	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	PTHR11556:SF1	FRUCTOSE-BISPHOSPHATASE
MARK_AS_OVER_ANNOTATED	NCGR_LOCUS1270	Miscanthus lutarioriparius	GO:0006002	fructose 6-phosphate metabolic process	PTN004269459	PTHR11556	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	PTHR11556:SF1	FRUCTOSE-BISPHOSPHATASE
MARK_AS_OVER_ANNOTATED	OCTS1	Octopus vulgaris	GO:0004364	glutathione transferase activity	PTN007515140	PTHR11571	GLUTATHIONE S-TRANSFERASE	PTHR11571:SF150	GLUTATHIONE S-TRANSFERASE
MARK_AS_OVER_ANNOTATED	OCTS1	Octopus vulgaris	GO:0006749	glutathione metabolic process	PTN007515140	PTHR11571	GLUTATHIONE S-TRANSFERASE	PTHR11571:SF150	GLUTATHIONE S-TRANSFERASE
MARK_AS_OVER_ANNOTATED	OLFML2A	Piliocolobus tephrosceles	GO:0007165	signal transduction	PTN000573914	PTHR23192	OLFACTOMEDIN-RELATED	PTHR23192:SF29	OLFACTOMEDIN-LIKE PROTEIN 2A
MARK_AS_OVER_ANNOTATED	aprA	Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) Hildenborough	GO:0009055	electron transfer activity	PTN000908678	PTHR11632	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	PTHR11632:SF51	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
MARK_AS_OVER_ANNOTATED	aroQ	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0019631	quinate catabolic process	PTN000479790	PTHR21272	CATABOLIC 3-DEHYDROQUINASE	PTHR21272:SF3	CATABOLIC 3-DEHYDROQUINASE
MARK_AS_OVER_ANNOTATED	cpx	Doryteuthis pealeii	GO:0031201	SNARE complex	PTN002703616	PTHR16705	COMPLEXIN	PTHR16705:SF4	COMPLEXIN
MARK_AS_OVER_ANNOTATED	dinB	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0005829	cytosol	PTN002253950	PTHR11076	DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER	PTHR11076:SF33	DNA POLYMERASE KAPPA
MARK_AS_OVER_ANNOTATED	exbB	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0017038	protein import	PTN004746214	PTHR30625	PROTEIN TOLQ	PTHR30625:SF16	BIOPOLYMER TRANSPORT PROTEIN EXBB
MARK_AS_OVER_ANNOTATED	flgE	Pseudomonas putida KT2440	GO:0071978	bacterial-type flagellum-dependent swarming motility	PTN000764868	PTHR30435	FLAGELLAR PROTEIN	PTHR30435:SF1	FLAGELLAR HOOK PROTEIN FLGE
MARK_AS_OVER_ANNOTATED	ftsY	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0006605	protein targeting	PTN002455079	PTHR43134	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA	PTHR43134:SF1	SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA
MARK_AS_OVER_ANNOTATED	mcr-1	Escherichia coli	GO:0009244	lipopolysaccharide core region biosynthetic process	PTN002019544	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MARK_AS_OVER_ANNOTATED	mcr-3	Aeromonas media	GO:0009244	lipopolysaccharide core region biosynthetic process	PTN002019542	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MARK_AS_OVER_ANNOTATED	mcr-4	Salmonella sp	GO:0009244	lipopolysaccharide core region biosynthetic process	PTN002019543	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MARK_AS_OVER_ANNOTATED	mcr2	Escherichia coli	GO:0009244	lipopolysaccharide core region biosynthetic process	PTN002019544	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MARK_AS_OVER_ANNOTATED	mscL	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0006811	monoatomic ion transport	PTN002410587	PTHR30266	MECHANOSENSITIVE CHANNEL MSCL	PTHR30266:SF2	LARGE-CONDUCTANCE MECHANOSENSITIVE CHANNEL
MARK_AS_OVER_ANNOTATED	pyrG	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0019856	pyrimidine nucleobase biosynthetic process	PTN000167579	PTHR11550	CTP SYNTHASE	PTHR11550:SF0	CTP SYNTHASE-RELATED
MARK_AS_OVER_ANNOTATED	relA	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0005886	plasma membrane	PTN002327464	PTHR21262	GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE	PTHR21262:SF31	GTP PYROPHOSPHOKINASE
MARK_AS_OVER_ANNOTATED	relA	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0008893	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	PTN002327464	PTHR21262	GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE	PTHR21262:SF31	GTP PYROPHOSPHOKINASE
MARK_AS_OVER_ANNOTATED	rlmE	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0008173	RNA methyltransferase activity	PTN002249808	PTHR10920	RIBOSOMAL RNA METHYLTRANSFERASE	PTHR10920:SF18	RRNA METHYLTRANSFERASE 2, MITOCHONDRIAL
MARK_AS_OVER_ANNOTATED	sdhA	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0009061	anaerobic respiration	PTN002267550	PTHR11632	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	PTHR11632:SF51	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
MARK_AS_OVER_ANNOTATED	tolC	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0015288	porin activity	PTN002011548	PTHR30026	OUTER MEMBRANE PROTEIN TOLC	PTHR30026:SF22	OUTER MEMBRANE EFFLUX PROTEIN
MARK_AS_OVER_ANNOTATED	tsaA	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0033554	cellular response to stress	PTN002242136	PTHR10681	THIOREDOXIN PEROXIDASE	PTHR10681:SF128	THIOREDOXIN-DEPENDENT PEROXIDE REDUCTASE, MITOCHONDRIAL
MARK_AS_OVER_ANNOTATED	tyrB	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0042802	identical protein binding	PTN002275473	PTHR11879	ASPARTATE AMINOTRANSFERASE	PTHR11879:SF37	AROMATIC-AMINO-ACID AMINOTRANSFERASE
MARK_AS_OVER_ANNOTATED	zwf	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0009051	pentose-phosphate shunt, oxidative branch	PTN002765778	PTHR23429	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD	PTHR23429:SF0	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE
MODIFY	A0A8B6GS20	Mytilus galloprovincialis	GO:0046856	phosphatidylinositol dephosphorylation	PTN000086907	PTHR10807	MYOTUBULARIN-RELATED	PTHR10807:SF73	LD06050P
MODIFY	A4F7P6	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0008610	lipid biosynthetic process	PTN000160696	PTHR11487	THIOESTERASE	PTHR11487:SF0	S-ACYL FATTY ACID SYNTHASE THIOESTERASE, MEDIUM CHAIN
MODIFY	AP180	Doryteuthis pealeii	GO:0008021	synaptic vesicle	PTN000536703	PTHR22951	CLATHRIN ASSEMBLY PROTEIN	PTHR22951:SF5	PHOSPHATIDYLINOSITOL-BINDING CLATHRIN ASSEMBLY PROTEIN LAP
MODIFY	CTR1	Octopus vulgaris	GO:0042277	peptide binding	PTN001202415	PTHR24241	NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	PTHR24241:SF161	G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN
MODIFY	CTR2	Octopus vulgaris	GO:0042277	peptide binding	PTN001202415	PTHR24241	NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	PTHR24241:SF161	G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN
MODIFY	K9IFT7	Desmodus rotundus	GO:0002227	innate immune response in mucosa	PTN000483423	PTHR21388	BETA-DEFENSIN-RELATED	PTHR21388:SF9	BETA-DEFENSIN 1
MODIFY	K9IFT7	Desmodus rotundus	GO:0050829	defense response to Gram-negative bacterium	PTN000483423	PTHR21388	BETA-DEFENSIN-RELATED	PTHR21388:SF9	BETA-DEFENSIN 1
MODIFY	K9IFT7	Desmodus rotundus	GO:0050830	defense response to Gram-positive bacterium	PTN000483423	PTHR21388	BETA-DEFENSIN-RELATED	PTHR21388:SF9	BETA-DEFENSIN 1
MODIFY	K9IWH5	Desmodus rotundus	GO:0050829	defense response to Gram-negative bacterium	PTN000150737	PTHR11407	LYSOZYME C	PTHR11407:SF28	LYSOZYME C
MODIFY	K9IWH5	Desmodus rotundus	GO:0050830	defense response to Gram-positive bacterium	PTN000150737	PTHR11407	LYSOZYME C	PTHR11407:SF28	LYSOZYME C
MODIFY	OPR	Octopus vulgaris	GO:0032870	cellular response to hormone stimulus	PTN001202415	PTHR24241	NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	PTHR24241:SF161	G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN
MODIFY	OPR	Octopus vulgaris	GO:0042277	peptide binding	PTN001202415	PTHR24241	NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR	PTHR24241:SF161	G-PROTEIN COUPLED RECEPTORS FAMILY 1 PROFILE DOMAIN-CONTAINING PROTEIN
MODIFY	TFP	Thlaspi arvense	GO:0030234	enzyme regulator activity	PTN008234626	PTHR47435	KELCH REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_5G12780)	PTHR47435:SF7	EPITHIOSPECIFIER PROTEIN
MODIFY	aceK	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0004721	phosphoprotein phosphatase activity	PTN002446796	PTHR39559	-	PTHR39559:SF1	ISOCITRATE DEHYDROGENASE KINASE_PHOSPHATASE
MODIFY	ahpC	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0005829	cytosol	PTN000074135	PTHR10681	THIOREDOXIN PEROXIDASE	PTHR10681:SF121	ALKYL HYDROPEROXIDE REDUCTASE C
MODIFY	ahpC	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0008379	thioredoxin peroxidase activity	PTN000074135	PTHR10681	THIOREDOXIN PEROXIDASE	PTHR10681:SF121	ALKYL HYDROPEROXIDE REDUCTASE C
MODIFY	ahpC	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0042744	hydrogen peroxide catabolic process	PTN000074135	PTHR10681	THIOREDOXIN PEROXIDASE	PTHR10681:SF121	ALKYL HYDROPEROXIDE REDUCTASE C
MODIFY	aprA	Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) Hildenborough	GO:0005886	plasma membrane	PTN000908678	PTHR11632	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	PTHR11632:SF51	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
MODIFY	aprA	Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) Hildenborough	GO:0009061	anaerobic respiration	PTN000908678	PTHR11632	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	PTHR11632:SF51	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
MODIFY	benD	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	PTN002460465	PTHR42760	SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER	PTHR42760:SF123	OXIDOREDUCTASE
MODIFY	celX	Acetivibrio thermocellus	GO:0004622	phosphatidylcholine lysophospholipase A1 activity	PTN002411393	PTHR30383	THIOESTERASE 1/PROTEASE 1/LYSOPHOSPHOLIPASE L1	PTHR30383:SF5	SGNH HYDROLASE-TYPE ESTERASE DOMAIN-CONTAINING PROTEIN
MODIFY	clpX	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0009376	HslUV protease complex	PTN002258935	PTHR48102	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	PTHR48102:SF7	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL
MODIFY	cpx	Doryteuthis pealeii	GO:0016079	synaptic vesicle exocytosis	PTN002703616	PTHR16705	COMPLEXIN	PTHR16705:SF4	COMPLEXIN
MODIFY	eryAI	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0004312	fatty acid synthase activity	PTN000918870	PTHR43775	FATTY ACID SYNTHASE	PTHR43775:SF51	INACTIVE PHENOLPHTHIOCEROL SYNTHESIS POLYKETIDE SYNTHASE TYPE I PKS1-RELATED
MODIFY	eryAII	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0004312	fatty acid synthase activity	PTN000918870	PTHR43775	FATTY ACID SYNTHASE	PTHR43775:SF51	INACTIVE PHENOLPHTHIOCEROL SYNTHESIS POLYKETIDE SYNTHASE TYPE I PKS1-RELATED
MODIFY	eryAIII	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0004312	fatty acid synthase activity	PTN000918870	PTHR43775	FATTY ACID SYNTHASE	PTHR43775:SF51	INACTIVE PHENOLPHTHIOCEROL SYNTHESIS POLYKETIDE SYNTHASE TYPE I PKS1-RELATED
MODIFY	eryBVII	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0000271	polysaccharide biosynthetic process	PTN002325964	PTHR21047	DTDP-6-DEOXY-D-GLUCOSE-3,5 EPIMERASE	PTHR21047:SF2	THYMIDINE DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE
MODIFY	eryBVII	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0019305	dTDP-rhamnose biosynthetic process	PTN002325964	PTHR21047	DTDP-6-DEOXY-D-GLUCOSE-3,5 EPIMERASE	PTHR21047:SF2	THYMIDINE DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE
MODIFY	eryCI	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0000271	polysaccharide biosynthetic process	PTN002015832	PTHR30244	TRANSAMINASE	PTHR30244:SF36	3-OXO-GLUCOSE-6-PHOSPHATE:GLUTAMATE AMINOTRANSFERASE
MODIFY	eryCIV	Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338)	GO:0000271	polysaccharide biosynthetic process	PTN000767067	PTHR30244	TRANSAMINASE	PTHR30244:SF9	PROTEIN RV3402C
MODIFY	fcs	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0006631	fatty acid metabolic process	PTN008449823	PTHR43201	ACYL-COA SYNTHETASE	PTHR43201:SF32	2-SUCCINYLBENZOATE--COA LIGASE, CHLOROPLASTIC_PEROXISOMAL
MODIFY	fcs	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0031956	medium-chain fatty acid-CoA ligase activity	PTN008449823	PTHR43201	ACYL-COA SYNTHETASE	PTHR43201:SF32	2-SUCCINYLBENZOATE--COA LIGASE, CHLOROPLASTIC_PEROXISOMAL
MODIFY	fur	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0008270	zinc ion binding	PTN002431809	PTHR33202	ZINC UPTAKE REGULATION PROTEIN	PTHR33202:SF2	FERRIC UPTAKE REGULATION PROTEIN
MODIFY	mcr-1	Escherichia coli	GO:0016776	phosphotransferase activity, phosphate group as acceptor	PTN002019544	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MODIFY	mcr-3	Aeromonas media	GO:0016776	phosphotransferase activity, phosphate group as acceptor	PTN002019542	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MODIFY	mcr-4	Salmonella sp	GO:0016776	phosphotransferase activity, phosphate group as acceptor	PTN002019543	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MODIFY	mcr2	Escherichia coli	GO:0016776	phosphotransferase activity, phosphate group as acceptor	PTN002019544	PTHR30443	INNER MEMBRANE PROTEIN	PTHR30443:SF0	PHOSPHOETHANOLAMINE TRANSFERASE EPTA
MODIFY	mdr	Starmerella bombicola	GO:0015421	ABC-type oligopeptide transporter activity	PTN008681462	PTHR43394	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	PTHR43394:SF11	ATP-BINDING CASSETTE TRANSPORTER
MODIFY	mluA	Methylorubrum extorquens AM1	GO:0015344	siderophore uptake transmembrane transporter activity	PTN004950207	PTHR32552	FERRICHROME IRON RECEPTOR-RELATED	PTHR32552:SF82	FCUA PROTEIN
MODIFY	pcaK	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0046942	carboxylic acid transport	PTN002781836	PTHR23508	CARBOXYLIC ACID TRANSPORTER PROTEIN HOMOLOG	PTHR23508:SF10	CARBOXYLIC ACID TRANSPORTER PROTEIN HOMOLOG
MODIFY	pcaK	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0046943	carboxylic acid transmembrane transporter activity	PTN002781836	PTHR23508	CARBOXYLIC ACID TRANSPORTER PROTEIN HOMOLOG	PTHR23508:SF10	CARBOXYLIC ACID TRANSPORTER PROTEIN HOMOLOG
MODIFY	phaZ	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0004806	triacylglycerol lipase activity	PTN002251178	PTHR43433	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	PTHR43433:SF5	AB HYDROLASE-1 DOMAIN-CONTAINING PROTEIN
MODIFY	phaZ	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0046503	glycerolipid catabolic process	PTN002251178	PTHR43433	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	PTHR43433:SF5	AB HYDROLASE-1 DOMAIN-CONTAINING PROTEIN
MODIFY	ptxS	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0003700	DNA-binding transcription factor activity	PTN002409864	PTHR30146	LACI-RELATED TRANSCRIPTIONAL REPRESSOR	PTHR30146:SF145	RIBOSE OPERON REPRESSOR
MODIFY	pvdA	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0006879	intracellular iron ion homeostasis	PTN002346172	PTHR42802	MONOOXYGENASE	PTHR42802:SF1	L-ORNITHINE N(5)-MONOOXYGENASE
MODIFY	pvdD	Pseudomonas putida KT2440	GO:0005737	cytoplasm	PTN005148629	PTHR45527	NONRIBOSOMAL PEPTIDE SYNTHETASE	PTHR45527:SF1	FATTY ACID SYNTHASE
MODIFY	pvdD	Pseudomonas putida KT2440	GO:0009239	enterobactin biosynthetic process	PTN005148629	PTHR45527	NONRIBOSOMAL PEPTIDE SYNTHETASE	PTHR45527:SF1	FATTY ACID SYNTHASE
MODIFY	pvdD	Pseudomonas putida KT2440	GO:0047527	2,3-dihydroxybenzoate-serine ligase activity	PTN005148629	PTHR45527	NONRIBOSOMAL PEPTIDE SYNTHETASE	PTHR45527:SF1	FATTY ACID SYNTHASE
MODIFY	tolC	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:1990281	efflux pump complex	PTN002011548	PTHR30026	OUTER MEMBRANE PROTEIN TOLC	PTHR30026:SF22	OUTER MEMBRANE EFFLUX PROTEIN
MODIFY	ydiJ	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0004458	D-lactate dehydrogenase (cytochrome) activity	PTN001714929	PTHR11748	D-LACTATE DEHYDROGENASE	PTHR11748:SF119	D-2-HYDROXYGLUTARATE DEHYDROGENASE
MODIFY	ydiJ	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0008720	D-lactate dehydrogenase (NAD+) activity	PTN001714929	PTHR11748	D-LACTATE DEHYDROGENASE	PTHR11748:SF119	D-2-HYDROXYGLUTARATE DEHYDROGENASE
MODIFY	ydiJ	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:1903457	lactate catabolic process	PTN001714929	PTHR11748	D-LACTATE DEHYDROGENASE	PTHR11748:SF119	D-2-HYDROXYGLUTARATE DEHYDROGENASE
REMOVE	ADAR2	Doryteuthis opalescens	GO:0008251	tRNA-specific adenosine deaminase activity	PTN000098697	PTHR10910	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	PTHR10910:SF62	AT07585P-RELATED
REMOVE	I7J3R9	Tequatrovirus	GO:0006302	double-strand break repair	PTN000015309	PTHR10133	DNA POLYMERASE I	PTHR10133:SF27	DNA POLYMERASE NU
REMOVE	IRE1	Hypocrea jecorina (strain QM6a)	GO:1990604	IRE1-TRAF2-ASK1 complex	PTN001017826	PTHR13954	IRE1-RELATED	PTHR13954:SF6	NON-SPECIFIC SERINE_THREONINE PROTEIN KINASE
REMOVE	K9IIP0	Desmodus rotundus	GO:0050728	negative regulation of inflammatory response	PTN002930566	PTHR46908	CUBILIN-LIKE PROTEIN	PTHR46908:SF4	TUMOR NECROSIS FACTOR-INDUCIBLE GENE 6 PROTEIN
REMOVE	K9IJK6	Desmodus rotundus	GO:0014909	smooth muscle cell migration	PTN000667065	PTHR24264	TRYPSIN-RELATED	PTHR24264:SF42	TISSUE-TYPE PLASMINOGEN ACTIVATOR
REMOVE	K9IJK6	Desmodus rotundus	GO:0048008	platelet-derived growth factor receptor signaling pathway	PTN000667065	PTHR24264	TRYPSIN-RELATED	PTHR24264:SF42	TISSUE-TYPE PLASMINOGEN ACTIVATOR
REMOVE	K9IMD0	Desmodus rotundus	GO:0005769	early endosome	PTN000159979	PTHR11485	TRANSFERRIN	PTHR11485:SF55	LACTOTRANSFERRIN
REMOVE	K9IMD0	Desmodus rotundus	GO:0005886	plasma membrane	PTN000159979	PTHR11485	TRANSFERRIN	PTHR11485:SF55	LACTOTRANSFERRIN
REMOVE	K9IMD0	Desmodus rotundus	GO:0055037	recycling endosome	PTN000159979	PTHR11485	TRANSFERRIN	PTHR11485:SF55	LACTOTRANSFERRIN
REMOVE	K9J287	Desmodus rotundus	GO:0005634	nucleus	PTN001684743	PTHR11371	DEOXYRIBONUCLEASE	PTHR11371:SF28	DEOXYRIBONUCLEASE-1-LIKE 1
REMOVE	NCGR_LOCUS1270	Miscanthus lutarioriparius	GO:0005737	cytoplasm	PTN004269459	PTHR11556	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	PTHR11556:SF1	FRUCTOSE-BISPHOSPHATASE
REMOVE	NCGR_LOCUS1270	Miscanthus lutarioriparius	GO:0005829	cytosol	PTN004269459	PTHR11556	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	PTHR11556:SF1	FRUCTOSE-BISPHOSPHATASE
REMOVE	NCGR_LOCUS1270	Miscanthus lutarioriparius	GO:0005986	sucrose biosynthetic process	PTN004269459	PTHR11556	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	PTHR11556:SF1	FRUCTOSE-BISPHOSPHATASE
REMOVE	NCGR_LOCUS1270	Miscanthus lutarioriparius	GO:0006094	gluconeogenesis	PTN004269459	PTHR11556	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	PTHR11556:SF1	FRUCTOSE-BISPHOSPHATASE
REMOVE	NCGR_LOCUS27674	Miscanthus lutarioriparius	GO:0005504	fatty acid binding	PTN009208978	PTHR47284	FATTY-ACID-BINDING PROTEIN 2	PTHR47284:SF3	FATTY-ACID-BINDING PROTEIN 2
REMOVE	NaODC_candidate_DCOR	Nicotiana attenuata	GO:0005737	cytoplasm	PTN004264316	PTHR11482	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	PTHR11482:SF6	ORNITHINE DECARBOXYLASE 1-RELATED
REMOVE	NaODC_candidate_ODC	Nicotiana attenuata	GO:0005737	cytoplasm	PTN004264314	PTHR11482	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	PTHR11482:SF63	ORNITHINE DECARBOXYLASE
REMOVE	NaPMT3	Nicotiana attenuata	GO:0004766	spermidine synthase activity	PTN004269893	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	PTHR11558:SF53	PUTRESCINE N-METHYLTRANSFERASE 1
REMOVE	NaPMT3	Nicotiana attenuata	GO:0008295	spermidine biosynthetic process	PTN004269893	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	PTHR11558:SF53	PUTRESCINE N-METHYLTRANSFERASE 1
REMOVE	NaUGT1_candidate_UGT85A2_0	Nicotiana attenuata	GO:0080043	quercetin 3-O-glucosyltransferase activity	PTN007550104	PTHR11926	GLUCOSYL/GLUCURONOSYL TRANSFERASES	PTHR11926:SF1392	GLYCOSYLTRANSFERASE
REMOVE	NaUGT1_candidate_UGT85A2_0	Nicotiana attenuata	GO:0080044	quercetin 7-O-glucosyltransferase activity	PTN007550104	PTHR11926	GLUCOSYL/GLUCURONOSYL TRANSFERASES	PTHR11926:SF1392	GLYCOSYLTRANSFERASE
REMOVE	PMT1	Nicotiana attenuata	GO:0004766	spermidine synthase activity	PTN004269893	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	PTHR11558:SF53	PUTRESCINE N-METHYLTRANSFERASE 1
REMOVE	PMT1	Nicotiana attenuata	GO:0008295	spermidine biosynthetic process	PTN004269893	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	PTHR11558:SF53	PUTRESCINE N-METHYLTRANSFERASE 1
REMOVE	PMT2	Nicotiana attenuata	GO:0004766	spermidine synthase activity	PTN004269898	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	PTHR11558:SF53	PUTRESCINE N-METHYLTRANSFERASE 1
REMOVE	PMT2	Nicotiana attenuata	GO:0008295	spermidine biosynthetic process	PTN004269898	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	PTHR11558:SF53	PUTRESCINE N-METHYLTRANSFERASE 1
REMOVE	Pks1	Metarhizium brunneum ARSEF 3297	GO:0004312	fatty acid synthase activity	PTN008685048	PTHR43775	FATTY ACID SYNTHASE	PTHR43775:SF45	CONIDIAL PIGMENT POLYKETIDE SYNTHASE ALB1
REMOVE	TFP	Thlaspi arvense	GO:0005634	nucleus	PTN008234626	PTHR47435	KELCH REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_5G12780)	PTHR47435:SF7	EPITHIOSPECIFIER PROTEIN
REMOVE	alr	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0005829	cytosol	PTN002021362	PTHR30511	ALANINE RACEMASE	PTHR30511:SF0	ALANINE RACEMASE, CATABOLIC-RELATED
REMOVE	alr	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0030632	D-alanine biosynthetic process	PTN002021362	PTHR30511	ALANINE RACEMASE	PTHR30511:SF0	ALANINE RACEMASE, CATABOLIC-RELATED
REMOVE	aprA	Nitratidesulfovibrio vulgaris (Desulfovibrio vulgaris) Hildenborough	GO:0000104	succinate dehydrogenase activity	PTN000908678	PTHR11632	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	PTHR11632:SF51	SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
REMOVE	benB	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0019380	3-phenylpropionate catabolic process	PTN002447682	PTHR41534	BLR3401 PROTEIN	PTHR41534:SF1	BLR3401 PROTEIN
REMOVE	benD	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0030497	fatty acid elongation	PTN002460465	PTHR42760	SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER	PTHR42760:SF123	OXIDOREDUCTASE
REMOVE	celC	Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)	GO:0008422	beta-glucosidase activity	PTN001262731	PTHR31297	GLUCAN ENDO-1,6-BETA-GLUCOSIDASE B	PTHR31297:SF41	ENDOGLUCANASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_5G01830)-RELATED
REMOVE	celC	Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372)	GO:0009986	cell surface	PTN001262731	PTHR31297	GLUCAN ENDO-1,6-BETA-GLUCOSIDASE B	PTHR31297:SF41	ENDOGLUCANASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_5G01830)-RELATED
REMOVE	cfr	Staphylococcus warneri	GO:0030488	tRNA methylation	PTN002022544	PTHR30544	23S RRNA METHYLTRANSFERASE	PTHR30544:SF5	RADICAL SAM CORE DOMAIN-CONTAINING PROTEIN
REMOVE	fbp	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0005986	sucrose biosynthetic process	PTN002265199	PTHR11556	FRUCTOSE-1,6-BISPHOSPHATASE-RELATED	PTHR11556:SF35	SEDOHEPTULOSE-1,7-BISPHOSPHATASE, CHLOROPLASTIC
REMOVE	fibrolase	Agkistrodon contortrix contortrix	GO:0005886	plasma membrane	PTN002628616	PTHR11905	ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN	PTHR11905:SF32	DISINTEGRIN AND METALLOPROTEINASE DOMAIN-CONTAINING PROTEIN 28
REMOVE	flgE	Pseudomonas putida KT2440	GO:0005829	cytosol	PTN000764868	PTHR30435	FLAGELLAR PROTEIN	PTHR30435:SF1	FLAGELLAR HOOK PROTEIN FLGE
REMOVE	fogD	Aspergillus ruber (strain CBS 135680)	GO:0000140	acylglycerone-phosphate reductase (NADP+) activity	PTN001211783	PTHR44169	NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE	PTHR44169:SF3	SHORT-CHAIN DEHYDROGENASE SRDE
REMOVE	fogD	Aspergillus ruber (strain CBS 135680)	GO:0004806	triacylglycerol lipase activity	PTN001211783	PTHR44169	NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE	PTHR44169:SF3	SHORT-CHAIN DEHYDROGENASE SRDE
REMOVE	fogD	Aspergillus ruber (strain CBS 135680)	GO:0005783	endoplasmic reticulum	PTN001211783	PTHR44169	NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE	PTHR44169:SF3	SHORT-CHAIN DEHYDROGENASE SRDE
REMOVE	fogD	Aspergillus ruber (strain CBS 135680)	GO:0005811	lipid droplet	PTN001211783	PTHR44169	NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE	PTHR44169:SF3	SHORT-CHAIN DEHYDROGENASE SRDE
REMOVE	fogD	Aspergillus ruber (strain CBS 135680)	GO:0006654	phosphatidic acid biosynthetic process	PTN001211783	PTHR44169	NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE	PTHR44169:SF3	SHORT-CHAIN DEHYDROGENASE SRDE
REMOVE	fogD	Aspergillus ruber (strain CBS 135680)	GO:0019433	triglyceride catabolic process	PTN001211783	PTHR44169	NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE	PTHR44169:SF3	SHORT-CHAIN DEHYDROGENASE SRDE
REMOVE	galB	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	PTN001770600	PTHR12993	N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED	PTHR12993:SF29	BLR3841 PROTEIN
REMOVE	glnA	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0016020	membrane	PTN002459220	PTHR43407	GLUTAMINE SYNTHETASE	PTHR43407:SF2	GLUTAMINE SYNTHETASE
REMOVE	groES	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0046872	metal ion binding	PTN002243569	PTHR10772	10 KDA HEAT SHOCK PROTEIN	PTHR10772:SF58	CO-CHAPERONIN GROES
REMOVE	lytN	Staphylococcus aureus	GO:0008932	lytic endotransglycosylase activity	PTN001856296	PTHR33734	LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2	PTHR33734:SF22	MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE D
REMOVE	mdcD	Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)	GO:0003989	acetyl-CoA carboxylase activity	PTN002873918	PTHR42995	ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA, CHLOROPLASTIC	PTHR42995:SF1	MALONATE DECARBOXYLASE BETA SUBUNIT
REMOVE	mdcD	Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)	GO:0006633	fatty acid biosynthetic process	PTN002873918	PTHR42995	ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA, CHLOROPLASTIC	PTHR42995:SF1	MALONATE DECARBOXYLASE BETA SUBUNIT
REMOVE	mdcD	Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)	GO:2001295	malonyl-CoA biosynthetic process	PTN002873918	PTHR42995	ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE SUBUNIT BETA, CHLOROPLASTIC	PTHR42995:SF1	MALONATE DECARBOXYLASE BETA SUBUNIT
REMOVE	mdh	Methylorubrum extorquens AM1	GO:0004459	L-lactate dehydrogenase (NAD+) activity	PTN002875914	PTHR43128	L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))	PTHR43128:SF16	L-LACTATE DEHYDROGENASE
REMOVE	mdh	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0004459	L-lactate dehydrogenase (NAD+) activity	PTN002454946	PTHR43128	L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))	PTHR43128:SF16	L-LACTATE DEHYDROGENASE
REMOVE	mdh	Methylorubrum extorquens AM1	GO:0006089	lactate metabolic process	PTN002875914	PTHR43128	L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))	PTHR43128:SF16	L-LACTATE DEHYDROGENASE
REMOVE	mdh	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0006089	lactate metabolic process	PTN002454946	PTHR43128	L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+))	PTHR43128:SF16	L-LACTATE DEHYDROGENASE
REMOVE	mdr	Starmerella bombicola	GO:0005743	mitochondrial inner membrane	PTN008681462	PTHR43394	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	PTHR43394:SF11	ATP-BINDING CASSETTE TRANSPORTER
REMOVE	mdr	Starmerella bombicola	GO:0090374	oligopeptide export from mitochondrion	PTN008681462	PTHR43394	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	PTHR43394:SF11	ATP-BINDING CASSETTE TRANSPORTER
REMOVE	merA	Pseudomonas aeruginosa	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	PTN005140324	PTHR43014	MERCURIC REDUCTASE	PTHR43014:SF2	MERCURIC REDUCTASE
REMOVE	mupP	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0006281	DNA repair	PTN002459629	PTHR43434	PHOSPHOGLYCOLATE PHOSPHATASE	PTHR43434:SF23	PHOSPHOGLYCOLATE PHOSPHATASE
REMOVE	mupP	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0008967	phosphoglycolate phosphatase activity	PTN002459629	PTHR43434	PHOSPHOGLYCOLATE PHOSPHATASE	PTHR43434:SF23	PHOSPHOGLYCOLATE PHOSPHATASE
REMOVE	nicD	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0016020	membrane	PTN001661081	PTHR43798	MONOACYLGLYCEROL LIPASE	PTHR43798:SF33	HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G14860)-RELATED
REMOVE	nicR	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0006950	response to stress	PTN008652328	PTHR33164	TRANSCRIPTIONAL REGULATOR, MARR FAMILY	PTHR33164:SF95	TRANSCRIPTIONAL REGULATOR
REMOVE	pepV	Fusobacterium nucleatum	GO:0006526	L-arginine biosynthetic process	PTN000865753	PTHR43808	ACETYLORNITHINE DEACETYLASE	PTHR43808:SF31	N-ACETYL-L-CITRULLINE DEACETYLASE
REMOVE	pepV	Fusobacterium nucleatum	GO:0008777	acetylornithine deacetylase activity	PTN000865753	PTHR43808	ACETYLORNITHINE DEACETYLASE	PTHR43808:SF31	N-ACETYL-L-CITRULLINE DEACETYLASE
REMOVE	pvdD	Pseudomonas putida KT2440	GO:0009366	enterobactin synthetase complex	PTN005148629	PTHR45527	NONRIBOSOMAL PEPTIDE SYNTHETASE	PTHR45527:SF1	FATTY ACID SYNTHASE
REMOVE	pvdE	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0034040	ATPase-coupled lipid transmembrane transporter activity	PTN000657720	PTHR24221	ATP-BINDING CASSETTE SUB-FAMILY B	PTHR24221:SF654	ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 6
REMOVE	retS	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0071474	cellular hyperosmotic response	PTN009177399	PTHR45339	HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J	PTHR45339:SF1	HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J
REMOVE	tig	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0043335	protein unfolding	PTN002412671	PTHR30560	TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE	PTHR30560:SF3	TRIGGER FACTOR-LIKE PROTEIN TIG, CHLOROPLASTIC
REMOVE	trpC	Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)	GO:0004640	phosphoribosylanthranilate isomerase activity	PTN002338157	PTHR22854	TRYPTOPHAN BIOSYNTHESIS PROTEIN	PTHR22854:SF2	INDOLE-3-GLYCEROL-PHOSPHATE SYNTHASE