module: dmel_toll_signaling
title: Toll signaling pathway in Drosophila melanogaster
label: Toll signaling pathway
module_type: SIGNALING_PATHWAY
description: >-
  The Toll pathway is activated when an extracellular serine protease cascade
  cleaves the pro-domain of the cytokine-like ligand Spaetzle, allowing it to
  bind the Toll receptor. In the early embryo, a maternally supplied cascade
  (Gastrulation defective, Snake and Easter), spatially restricted by the
  Pipe sulfotransferase in the ventral follicle cells, generates ventral
  Spaetzle and establishes the dorsal-ventral axis. In the immune response,
  pattern-recognition proteins (PGRP-SA, GNBP1, GNBP3) and the virulence
  sensor Persephone activate ModSP, Grass and Hayan, converging on the
  Spaetzle-processing enzyme. Activated Toll recruits the adaptors MyD88 and
  Tube and the kinase Pelle, which lead to degradation of the IkB protein
  Cactus and nuclear entry of the NF-kappaB factors Dorsal and Dif. Related
  Toll receptors such as Toll-7, bound by neurotrophin-like Spaetzle family
  ligands, act in the nervous system.
summary: >-
  Protease cascades that activate Spaetzle, the Toll receptor, the
  MyD88-Tube-Pelle adaptor complex and NF-kappaB factors Dorsal and Dif, used
  for dorsal-ventral patterning and antimicrobial defense.
concepts:
  - {id: GO:0008063, label: Toll signaling pathway}
parts:
  - id: spaetzle_activation_cascades
    label: Spaetzle-activating protease cascades
    role: extracellular ligand activation
    variant_sets:
      - id: spaetzle_cascade_variants
        label: Embryonic or immune Spaetzle-activating cascade
        selection: ONE_OR_MORE
        variants:
          - id: embryonic_dv_cascade
            label: Embryonic dorsal-ventral protease cascade
            description: >-
              Windbeutel is required in the follicle-cell ER for Pipe, which
              sulfates eggshell components ventrally; Nudel, Gastrulation
              defective, Snake and Easter form the protease cascade whose
              product, Easter, cleaves Spaetzle.
            genes: [wbl, pip, ndl, gd, snk, ea]
            unit_functions:
              gd: {id: GO:0004252, label: serine-type endopeptidase activity}
              snk: {id: GO:0004252, label: serine-type endopeptidase activity}
              ea: {id: GO:0004252, label: serine-type endopeptidase activity}
            processes:
              - {id: GO:0009950, label: dorsal/ventral axis specification}
          - id: immune_cascade
            label: Immune Spaetzle-activating cascade
            parts:
              - id: immune_recognition
                label: Pattern-recognition proteins
                role: microbial pattern recognition
                description: >-
                  PGRP-SA and GNBP1 sense Lys-type peptidoglycan and GNBP3 senses
                  fungal beta-glucan; the amidases PGRP-SC1a, SC1b and SC2, and
                  GNBP-like3, are further FlyBase core members.
                genes: [PGRP-SA, GNBP1, GNBP3, GNBP-like3, PGRP-SC1a, PGRP-SC1b, PGRP-SC2]
              - id: immune_proteases
                label: Immune serine protease cascade
                role: protease cascade converging on SPE
                description: >-
                  ModSP and Grass relay recognition signals, Persephone senses
                  microbial proteases, and Hayan and SPE lead to Spaetzle cleavage.
                  Other FlyBase core members (Spirit, Sphinx1, Sphinx2, Sphe, MP1,
                  CtsK1) contribute to Spaetzle activation in specific contexts.
                genes: [modSP, grass, psh, Hayan, SPE, spirit, sphinx1, sphinx2, sphe, MP1, CtsK1]
                unit_functions:
                  modSP: {id: GO:0004252, label: serine-type endopeptidase activity}
                  grass: {id: GO:0004252, label: serine-type endopeptidase activity}
                  psh: {id: GO:0004252, label: serine-type endopeptidase activity}
                  Hayan: {id: GO:0004252, label: serine-type endopeptidase activity}
                  SPE: {id: GO:0004252, label: serine-type endopeptidase activity}
                processes:
                  - {id: GO:0160032, label: Toll receptor ligand protein activation cascade}
            connections:
              - {source: immune_recognition, target: immune_proteases, connection_type: POSITIVELY_REGULATES, description: "Recognition complexes activate ModSP and the downstream protease cascade."}
  - id: spaetzle_family_ligands
    label: Spaetzle-family ligands
    role: ligands
    genes: [spz, spz5, NT1]
    unit_functions:
      spz: {id: GO:0005121, label: Toll binding}
  - id: toll_receptors
    label: Toll receptors and associated membrane protein
    role: receptors
    description: >-
      Toll is the receptor for processed Spaetzle; Toll-7 is a neuronal Toll
      receptor bound by NT1. Tehao is a membrane protein that FlyBase places among
      the core components; its mechanism is not well defined.
    genes: [Tl, Toll-7, Tehao]
    unit_functions:
      Tl: {id: GO:0004888, label: transmembrane signaling receptor activity}
  - id: toll_adaptor_complex
    label: MyD88-Tube-Pelle adaptor complex
    role: intracellular signal transduction
    description: >-
      MyD88 binds the Toll TIR domain and assembles a death-domain complex with
      Tube and the kinase Pelle; Weckle helps recruit MyD88 to Toll.
    complex: true
    genes: [Myd88, tub, pll, wek]
    unit_functions:
      pll: {id: GO:0004674, label: protein serine/threonine kinase activity}
  - id: nfkb_factors
    label: NF-kappaB factors Dorsal and Dif
    role: transcriptional output
    genes: [dl, Dif]
    function: {id: GO:0000981, label: "DNA-binding transcription factor activity, RNA polymerase II-specific"}
connections:
  - {source: spaetzle_activation_cascades, target: spaetzle_family_ligands, connection_type: POSITIVELY_REGULATES, description: "The terminal protease (Easter or SPE) cleaves pro-Spaetzle into its active form."}
  - {source: spaetzle_family_ligands, target: toll_receptors, connection_type: POSITIVELY_REGULATES, description: "Processed Spaetzle binds and activates Toll."}
  - {source: toll_receptors, target: toll_adaptor_complex, connection_type: POSITIVELY_REGULATES, description: "Activated Toll recruits MyD88, Tube and Pelle."}
  - {source: toll_adaptor_complex, target: nfkb_factors, connection_type: POSITIVELY_REGULATES, description: "Pelle signaling leads to Cactus degradation and nuclear entry of Dorsal and Dif."}
notes: >-
  Boundary. The module combines the FlyBase dorsal group and the Toll pathway
  core subgroups. Windbeutel (wbl) is a dorsal-group member that acts as an ER
  chaperone for Pipe. The IkB protein Cactus is in the FlyBase negative
  regulator set and is therefore not modelled as a part, although it is the
  direct target of the pathway; serpins (Spn27A, Necrotic, Spn88Ea) are
  likewise regulators. PGRP-SC amidases scavenge peptidoglycan and may dampen
  rather than drive signaling.
