Definitions
Node Curation
- mapped
- A completed PN-to-GO mapping exists for this source node.
- context_only
- A GO relationship is recorded for context, but is unsafe for gene-level propagation.
- no_mapping
- Reviewed and concluded that no GO mapping should be made.
- deferred
- Reviewed, but needs more evidence, a better GO term, or narrower child-level handling.
- pending_review
- Tracked for coverage, but not yet manually analyzed in depth.
- missing_from_yaml
- The workbook contains this node, but no YAML curation record exists. This should stay zero.
Mapping Scope
- exact
- The PN node is a direct semantic match to the GO target.
- ok_for_propagation_to_go
- The mapping is not exact, but can generate candidate gene-GO annotations for review.
- too_broad_to_propagate
- Useful context, but unsafe to project as candidate gene annotations.
Projection Status
- already_in_goa_exact
- The exact GO target is already present in local GOA for the gene.
- entailed_by_goa_closure
- Local GOA has a more specific descendant, so the projection adds no new term.
- more_specific_than_existing_goa
- The projection is more specific than an existing broader GOA term.
- supported_by_goa_regulation
- GOA has a regulation term related to the projected process.
- new_to_goa
- No exact, closure, or regulation support was found in local GOA.
- no_local_goa
- No GOA record was available from the configured source, currently
~/repos/go-db/db/goa_human.ddb; this is a data-availability state, not biological evidence.