{
  "method": "Biopython 1.85 global BLOSUM62, gap open -10, extension -0.5",
  "inputs": [
    {
      "path": "genes/human/TRAF2/TRAF2-uniprot.txt",
      "accession": "Q12933",
      "length": 501,
      "sequence_sha256": "c7292916fa6aa68b7dd5e3d6182e1acd4d2586c7b8bfa1107d882b3ed3f2d54d"
    },
    {
      "path": "genes/HORSE/TRAF2/TRAF2-uniprot.txt",
      "accession": "F7BIV4",
      "length": 516,
      "sequence_sha256": "2c64f9b8d4e6a6d364de3cda7e16aec36ca788f5a96cddff545b9bf9dd51a054"
    }
  ],
  "score": 2473.5,
  "paired_residues": 501,
  "identical_residues": 461,
  "identity_among_paired": 0.9201596806387226,
  "coverage_left": 1.0,
  "coverage_right": 0.9709302325581395,
  "alignment": "target            0 MAAASVTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLAS\n                  0 ||||||||||||.||||||||||||||||.|||||||.|||||||||||||||||.||.|\nquery             0 MAAASVTPPGSLDLLQPGFSKTLLGTKLEDKYLCSACKNVLRRPFQAQCGHRYCSYCLTS\n\ntarget           60 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE\n                 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\nquery            60 ILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPAVCPSDGCTWKGTLKE\n\ntarget          120 YESCHEGRCPLMLTECPACKGLVRLGEKERHLEHECPERSLSCRHCRAPCCGADVKAHHE\n                120 |||||||.||.||||||||||||||||||.|||||||||||||||||||||.||.||||.\nquery           120 YESCHEGHCPFMLTECPACKGLVRLGEKEHHLEHECPERSLSCRHCRAPCCWADMKAHHD\n\ntarget          180 VCPKFPLTCDGCGKKKIPREKFQDHVKTCGKCRVPCRFHAIGCLETVEGEKQQEHEVQWL\n                180 |||||||||||||||||.||||||||.|||||||||||||.||.|.||.|||||||..||\nquery           180 VCPKFPLTCDGCGKKKISREKFQDHVRTCGKCRVPCRFHAVGCPEMVESEKQQEHEAKWL\n\ntarget          240 REHLAMLLSSVLEAKPLLGD------QSHAG---------SELLQRCESLEKKTATFENI\n                240 .|||||||...|..|.||||------||..|---------.|||||||.||.||||||||\nquery           240 QEHLAMLLGVLLDTKHLLGDSSSFLGQSQVGNPGAEVSKAAELLQRCEALERKTATFENI\n\ntarget          285 VCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEM\n                300 ||||||||||||||||||.||||||||.|||||.|||||||||||||||||||||||.||\nquery           300 VCVLNREVERVAMTAEACGRQHRLDQDRIEALSNKVQQLERSIGLKDLAMADLEQKVHEM\n\ntarget          345 EASTYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT\n                360 ||||.|||||||||||.||||||||||.||||||||||||||||||||||||||||||||\nquery           360 EASTFDGVFIWKISDFTRKRQEAVAGRTPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGT\n\ntarget          405 HLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNI\n                420 |.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||\nquery           420 HVSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVSDMNI\n\ntarget          465 ASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 501\n                480 |||||||||||||||||||||||||||||||||||| 516\nquery           480 ASGCPLFCPVSKMEAKNSYVRDDAIFIKAIVDLTGL 516\n",
  "limitations": "Pairwise similarity does not establish reciprocal orthology, full-length gene-model correctness or functional conservation."
}