CD2AP encodes CD2-associated protein, a multi-SH3-domain adaptor/scaffolding protein that connects membrane, endosomal, and junctional protein complexes to the actin cytoskeleton. It localizes to cytoplasm, actin-rich ruffles and leading edges, vesicle/endosomal compartments, epithelial junctions, and the podocyte slit diaphragm. CD2AP organizes multimeric partner complexes through SH3/proline-rich and coiled-coil interactions, supports actin filament organization and cell extension, contributes to epithelial junction formation by helping position a SH3BP1/JACOP/CapZ module that confines Cdc42 signaling, and participates in endocytic/receptor-trafficking contexts relevant to neuronal and Alzheimer disease models.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0016477 cell migration | IBA GO_REF:0000033 | ACCEPT | Summary: CD2AP promotes actin-linked cell extension and migration as part of its cortical adaptor/scaffold function. Reason: CD2AP/CMS is characterized as an SH3-domain scaffolding adaptor that colocalizes with F-actin at ruffles and leading edges, alters actin organization, forms multimeric partner complexes, and links membrane or junctional proteins to the actin cytoskeleton. |
| GO:0030674 protein-macromolecule adaptor activity | IBA GO_REF:0000033 | ACCEPT | Summary: CD2AP is a membrane- and junction-associated adaptor/scaffold that links partner proteins to actin-rich cortical and endosomal compartments. Reason: CD2AP/CMS is characterized as an SH3-domain scaffolding adaptor that colocalizes with F-actin at ruffles and leading edges, alters actin organization, forms multimeric partner complexes, and links membrane or junctional proteins to the actin cytoskeleton. |
| GO:0005737 cytoplasm | IBA GO_REF:0000033 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0007015 actin filament organization | IBA GO_REF:0000033 | ACCEPT | Summary: CD2AP directly supports actin cytoskeleton organization and acts in actin-rich ruffles, cell extensions, and epithelial junction remodeling. Reason: Retain as core because the original CMS/CD2AP study and later junction work support CD2AP as an actin-associated scaffold that regulates actin arrangement, cell extensions, and junctional actin remodeling. |
| GO:0031982 vesicle | IBA GO_REF:0000033 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005886 plasma membrane | IBA GO_REF:0000033 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0031252 cell leading edge | IBA GO_REF:0000033 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0001726 ruffle | IEA GO_REF:0000044 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005856 cytoskeleton | IEA GO_REF:0000044 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0032991 protein-containing complex | IEA GO_REF:0000117 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0070161 anchoring junction | IEA GO_REF:0000044 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005515 protein binding | IPI PMID:17020880 Atypical polyproline recognition by the CMS N-terminal Src h... | MODIFY | Summary: The cited interaction is compatible with CD2AP scaffold biology, but generic protein binding is too broad for the actual molecular role. Reason: Generic protein binding does not capture CD2AP function; the informative biology is SH3/proline-rich partner recognition, adaptor/scaffold activity, actin association, or specific junction/endosomal complex participation. Proposed replacements: protein-macromolecule adaptor activity |
| GO:0005515 protein binding | IPI PMID:17474147 Systematic identification of SH3 domain-mediated human prote... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:17853893 Human ESCRT and ALIX proteins interact with proteins of the ... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:19380743 Charting the molecular network of the drug target Bcr-Abl. | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:21706016 Selected reaction monitoring mass spectrometry reveals the d... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:21822214 The B-cell antigen receptor signals through a preformed tran... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:21988832 Toward an understanding of the protein interaction network o... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:22662192 IQGAP1 interacts with components of the slit diaphragm compl... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:23663663 Multimeric and differential binding of CIN85/CD2AP with two ... | MODIFY | Summary: The cited interaction is compatible with CD2AP scaffold biology, but generic protein binding is too broad for the actual molecular role. Reason: Generic protein binding does not capture CD2AP function; the informative biology is SH3/proline-rich partner recognition, adaptor/scaffold activity, actin association, or specific junction/endosomal complex participation. Proposed replacements: protein-macromolecule adaptor activity |
| GO:0005515 protein binding | IPI PMID:25036637 A quantitative chaperone interaction network reveals the arc... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:28514442 Architecture of the human interactome defines protein commun... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:31413325 HENA, heterogeneous network-based data set for Alzheimer's d... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:31980649 Extensive rewiring of the EGFR network in colorectal cancer ... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:32552912 Upregulation of RIN3 induces endosomal dysfunction in Alzhei... | MODIFY | Summary: The cited interaction is compatible with CD2AP scaffold biology, but generic protein binding is too broad for the actual molecular role. Reason: Generic protein binding does not capture CD2AP function; the informative biology is SH3/proline-rich partner recognition, adaptor/scaffold activity, actin association, or specific junction/endosomal complex participation. Proposed replacements: protein-macromolecule adaptor activity |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:40205054 Multimodal cell maps as a foundation for structural and func... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0042802 identical protein binding | IPI PMID:17020880 Atypical polyproline recognition by the CMS N-terminal Src h... | ACCEPT | Summary: Structural and biochemical evidence supports multimerization of CD2AP/CMS SH3-domain complexes, consistent with homotypic/multimeric scaffold assembly. Reason: CD2AP/CMS is characterized as an SH3-domain scaffolding adaptor that colocalizes with F-actin at ruffles and leading edges, alters actin organization, forms multimeric partner complexes, and links membrane or junctional proteins to the actin cytoskeleton. |
| GO:0042802 identical protein binding | IPI PMID:31413325 HENA, heterogeneous network-based data set for Alzheimer's d... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0002102 podosome | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Podosome localization is plausible for an actin-rich adhesion scaffold but is not the central CD2AP function established by the strongest evidence. Reason: Keep as non-core because podosomes are an actin-rich adhesion context related to CD2AP cytoskeletal biology but are less central than ruffles, junctions, slit diaphragm, and endosomal adaptor functions. |
| GO:0003779 actin binding | IEA GO_REF:0000107 | ACCEPT | Summary: CD2AP is an actin-associated scaffold, and actin/actin-filament binding is consistent with the original CMS/CD2AP functional evidence and later CapZ-linked junction work. Reason: Retain as core because the original CMS/CD2AP study and later junction work support CD2AP as an actin-associated scaffold that regulates actin arrangement, cell extensions, and junctional actin remodeling. |
| GO:0005641 nuclear envelope lumen | IEA GO_REF:0000107 | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005737 cytoplasm | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005770 late endosome | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005884 actin filament | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005886 plasma membrane | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005911 cell-cell junction | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0030276 clathrin binding | IEA GO_REF:0000107 | ACCEPT | Summary: CD2AP/CIN85-family adaptor biology supports vesicle, late-endosome, TGN, and clathrin-linked trafficking annotations, with Alzheimer-context evidence for RIN3/BIN1/CD2AP early-endosome recruitment. Reason: Retain as core or near-core because CD2AP is an endocytic adaptor family member that couples cargo trafficking to the cytoskeleton and participates in early-endosomal/receptor-trafficking contexts. |
| GO:0030424 axon | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0030425 dendrite | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0030426 growth cone | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0031594 neuromuscular junction | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0031982 vesicle | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0032588 trans-Golgi network membrane | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0036057 slit diaphragm | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0036312 phosphatidylinositol 3-kinase regulatory subunit binding | IEA GO_REF:0000107 | ACCEPT | Summary: CD2AP proline-rich sequences bind signaling SH3-domain partners including the p85 regulatory subunit of phosphatidylinositol 3-kinase, fitting its adaptor role. Reason: CD2AP/CMS is characterized as an SH3-domain scaffolding adaptor that colocalizes with F-actin at ruffles and leading edges, alters actin organization, forms multimeric partner complexes, and links membrane or junctional proteins to the actin cytoskeleton. |
| GO:0043005 neuron projection | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0050808 synapse organization | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0051015 actin filament binding | IEA GO_REF:0000107 | ACCEPT | Summary: CD2AP is an actin-associated scaffold, and actin/actin-filament binding is consistent with the original CMS/CD2AP functional evidence and later CapZ-linked junction work. Reason: Retain as core because the original CMS/CD2AP study and later junction work support CD2AP as an actin-associated scaffold that regulates actin arrangement, cell extensions, and junctional actin remodeling. |
| GO:0071944 cell periphery | IEA GO_REF:0000107 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0005886 plasma membrane | IDA GO_REF:0000052 | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0070161 anchoring junction | EXP PMID:22891260 Epithelial junction formation requires confinement of Cdc42 ... | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0030424 axon | ISS PMID:32552912 Upregulation of RIN3 induces endosomal dysfunction in Alzhei... | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0030425 dendrite | ISS PMID:32552912 Upregulation of RIN3 induces endosomal dysfunction in Alzhei... | KEEP AS NON CORE | Summary: Neuronal projection or synapse context is plausible in Alzheimer/endosomal models but is not the primary defining activity of CD2AP. Reason: Keep as non-core because CD2AP has neuronal/endosomal disease-model evidence, but the strongest conserved function remains SH3-mediated adaptor/scaffold activity at actin-rich membrane, junction, and endosomal structures. |
| GO:0050714 positive regulation of protein secretion | IMP PMID:27044754 FRMD4A-cytohesin signaling modulates the cellular release of... | UNDECIDED | Summary: The tau-secretion paper is abstract-only in the cache and the abstract foregrounds FRMD4A rather than CD2AP, so the CD2AP-specific experimental basis cannot be verified here. Reason: Use UNDECIDED rather than REMOVE because this is an experimental annotation and the cached abstract does not expose the CD2AP-specific evidence that curators may have used from the full text. |
| GO:0045296 cadherin binding | HDA PMID:25468996 E-cadherin interactome complexity and robustness resolved by... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:22891260 Epithelial junction formation requires confinement of Cdc42 ... | MODIFY | Summary: The cited interaction is compatible with CD2AP scaffold biology, but generic protein binding is too broad for the actual molecular role. Reason: Generic protein binding does not capture CD2AP function; the informative biology is SH3/proline-rich partner recognition, adaptor/scaffold activity, actin association, or specific junction/endosomal complex participation. Proposed replacements: protein-macromolecule adaptor activity |
| GO:0007015 actin filament organization | IMP PMID:22891260 Epithelial junction formation requires confinement of Cdc42 ... | ACCEPT | Summary: CD2AP directly supports actin cytoskeleton organization and acts in actin-rich ruffles, cell extensions, and epithelial junction remodeling. Reason: Retain as core because the original CMS/CD2AP study and later junction work support CD2AP as an actin-associated scaffold that regulates actin arrangement, cell extensions, and junctional actin remodeling. |
| GO:0051058 negative regulation of small GTPase mediated signal transduction | IMP PMID:22891260 Epithelial junction formation requires confinement of Cdc42 ... | ACCEPT | Summary: CD2AP is part of a SH3BP1/JACOP/CapZ junctional scaffold required for normal Cdc42 signaling, actin remodeling, and epithelial junction formation. Reason: Retain as core because full-text evidence shows CD2AP in a junctional scaffold with SH3BP1/JACOP and CapZ; CD2AP depletion impaired junctional SH3BP1 targeting, Cdc42 control, and junction formation. |
| GO:0005515 protein binding | IPI PMID:18641129 Differential requirements for Alix and ESCRT-III in cytokine... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0070062 extracellular exosome | HDA PMID:23533145 In-depth proteomic analyses of exosomes isolated from expres... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0070062 extracellular exosome | HDA PMID:19056867 Large-scale proteomics and phosphoproteomics of urinary exos... | MARK AS OVER ANNOTATED | Summary: This annotation comes from generic interaction, high-throughput, dataset, or low-specificity localization evidence and does not define CD2AP core molecular function. Reason: Mark as over-annotated because this high-throughput or generic interaction/localization evidence is less informative than CD2AP adaptor, actin-cytoskeleton, endosomal, and junctional terms. |
| GO:0005515 protein binding | IPI PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | MODIFY | Summary: The cited interaction is compatible with CD2AP scaffold biology, but generic protein binding is too broad for the actual molecular role. Reason: Generic protein binding does not capture CD2AP function; the informative biology is SH3/proline-rich partner recognition, adaptor/scaffold activity, actin association, or specific junction/endosomal complex participation. Proposed replacements: protein-macromolecule adaptor activity actin filament binding |
| GO:0017124 SH3 domain binding | IPI PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | ACCEPT | Summary: CD2AP has proline-rich regions that bind SH3-domain-containing partners, supporting its scaffold/adaptor function. Reason: CD2AP/CMS is characterized as an SH3-domain scaffolding adaptor that colocalizes with F-actin at ruffles and leading edges, alters actin organization, forms multimeric partner complexes, and links membrane or junctional proteins to the actin cytoskeleton. |
| GO:0001726 ruffle | IDA PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0031941 filamentous actin | IDA PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0007165 signal transduction | NAS PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | MODIFY | Summary: The 1999 paper supports CD2AP as a scaffold/adaptor involved in cytoskeletal rearrangement, but broad signal transduction is not specific enough. Reason: Replace broad signal transduction with the more specific adaptor and actin-organization functions supported by the same study. Proposed replacements: protein-macromolecule adaptor activity actin filament organization |
| GO:0005200 structural constituent of cytoskeleton | TAS PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | MODIFY | Summary: CD2AP is an actin-associated scaffold, but structural constituent of cytoskeleton overstates the evidence compared with adaptor/actin-binding function. Reason: Replace structural constituent of cytoskeleton with CD2AP adaptor activity and actin filament binding, which better describe the evidence. Proposed replacements: protein-macromolecule adaptor activity actin filament binding |
| GO:0005737 cytoplasm | TAS PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0006930 substrate-dependent cell migration, cell extension | TAS PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | ACCEPT | Summary: CD2AP directly supports actin cytoskeleton organization and acts in actin-rich ruffles, cell extensions, and epithelial junction remodeling. Reason: Retain as core because the original CMS/CD2AP study and later junction work support CD2AP as an actin-associated scaffold that regulates actin arrangement, cell extensions, and junctional actin remodeling. |
| GO:0015629 actin cytoskeleton | TAS PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | ACCEPT | Summary: This location matches CD2AP localization to cytoplasm, cortical actin structures, ruffles/leading edges, vesicles/endosomal compartments, plasma membrane, and junctional/slit-diaphragm sites. Reason: Retain as core because CD2AP acts at actin-rich membrane and junction compartments, including ruffles, leading edges, cell-cell/anchoring junctions, podocyte slit diaphragm context, and vesicle/endosomal sites. |
| GO:0065003 protein-containing complex assembly | TAS PMID:10339567 CMS: an adapter molecule involved in cytoskeletal rearrangem... | ACCEPT | Summary: CD2AP directly supports actin cytoskeleton organization and acts in actin-rich ruffles, cell extensions, and epithelial junction remodeling. Reason: Retain as core because the original CMS/CD2AP study and later junction work support CD2AP as an actin-associated scaffold that regulates actin arrangement, cell extensions, and junctional actin remodeling. |
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Download this section (compressed HTML)Q: Should CD2AP endocytic adaptor biology be curated with a specific clathrin/endocytosis adaptor term rather than repeated generic protein binding annotations?
Suggested experts: GO molecular-function curators, Endocytosis and adaptor-protein experts
Q: Which neuronal axon, dendrite, and synapse annotations are directly supported for CD2AP itself versus inherited from Alzheimer/RIN3 endosomal disease-model context?
Suggested experts: Neuronal endosomal trafficking experts, Alzheimer disease genetics curators
Q: Should podocyte slit-diaphragm CD2AP biology include a more specific process annotation for slit diaphragm organization or maintenance?
Suggested experts: Podocyte biology experts, GO cellular-component/process curators
Experiment: Edit or rescue CD2AP SH3 domains, proline-rich region, coiled-coil region, and actin-associated C-terminal region in epithelial cells and podocyte models, then measure partner recruitment, junction assembly, slit-diaphragm marker organization, Cdc42 spatial activity, and actin dynamics.
Hypothesis: CD2AP scaffold domains separably control partner multimerization, actin association, and junction/slit-diaphragm organization.
Type: domain-resolved junction and actin scaffold rescue assay
Experiment: Perturb CD2AP, RIN3, and BIN1 singly and in combination in primary neurons or induced neuronal cultures, then quantify APP/BACE1 trafficking, early-endosome recruitment, axonal transport, APP C-terminal fragments, and tau secretion.
Hypothesis: The Alzheimer-associated RIN3-BIN1-CD2AP module affects APP and tau-related phenotypes through endosomal trafficking rather than through a generic protein-binding function.
Type: neuronal endosomal trafficking and APP-processing assay
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