MAN1B1 (ER alpha-1,2-mannosidase I, ERManI, ERMan1) is a calcium-dependent, type II single-pass endoplasmic reticulum membrane glycosidase of glycoside hydrolase family 47 (GH47, EC 3.2.1.113) that trims terminal alpha-1,2-linked mannose residues from N-linked oligosaccharides. At low enzyme concentration it removes a single mannose from Man9GlcNAc2 to generate Man8GlcNAc2 isomer B, the first committed mannose-trimming step of N-glycan maturation; at the high local concentrations found in the ER-derived quality control compartment (ERQC) it excises additional alpha-1,2-mannoses to yield Man5-6GlcNAc2. This trimming removes misfolded glycoproteins from the calnexin/reglucosylation folding cycle and generates the demannosylated signal that commits them to ER-associated degradation (ERAD), where the trimmed glycan is recognized by downstream lectins (e.g. OS-9/XTP3-B) and delivered to the HRD1 ubiquitin-ligase machinery. ERManI thus functions as a key "mannose timer" in glycoprotein quality control. It is widely expressed, resides in the ER membrane and concentrates in mobile ER-like quality control vesicles that converge on the pericentriolar ERQC. Biallelic loss-of-function variants cause an autosomal-recessive congenital disorder of glycosylation with intellectual disability (Rafiq syndrome / MAN1B1-CDG).
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0016020
membrane
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: Generic membrane localization inferred phylogenetically. MAN1B1 is a single-pass type II ER membrane protein, but the more specific endoplasmic reticulum membrane term captures the location informatively.
Reason: Bare "membrane" is uninformative relative to the specific ER membrane annotation; MAN1B1 is anchored in the ER membrane, not membranes generally.
Proposed replacements:
endoplasmic reticulum membrane
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
|
GO:0005783
endoplasmic reticulum
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: MAN1B1 is an ER-resident enzyme; phylogenetic assignment of ER localization is consistent with experimental evidence.
Reason: Correct site of action; MAN1B1 acts in the endoplasmic reticulum on nascent and misfolded glycoproteins.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: The defining molecular function of MAN1B1; phylogenetic assignment of GH47 alpha-1,2-mannosidase activity is well supported.
Reason: Core molecular function; corroborated by direct enzymatic assays, crystal structures, EC 3.2.1.113, and CAZy GH47 membership.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
|
|
GO:0036503
ERAD pathway
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: MAN1B1 generates the trimmed-mannose ERAD signal that commits misfolded glycoproteins to degradation; phylogenetic assignment is well supported.
Reason: Core biological process; mannose trimming by ERManI is required for ERAD of misfolded glycoproteins.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Involved in glycoprotein quality control targeting of misfolded glycoproteins for degradation
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Electronic assignment of the core GH47 alpha-1,2-mannosidase activity, consistent with experimental evidence.
Reason: Correct core molecular function; redundant with IDA/EXP evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0005509
calcium ion binding
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: GH47 mannosidases require a Ca2+ ion in the active site for catalysis; MAN1B1 binds calcium as a structural/catalytic cofactor. This is a real attribute but subsidiary to the mannosidase activity, not an independent calcium-signaling function.
Reason: Accurate structural cofactor requirement of the GH47 fold but not a standalone core function; the catalytic mannosidase activity is the informative function.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Name=Ca(2+)
PMID:10409699
The mannose cleavage reaction required divalent cations as indicated by inhibition with EDTA or EGTA and reversal of the inhibition by the addition of Ca(2+)
|
|
GO:0005789
endoplasmic reticulum membrane
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic transfer of ER membrane localization from the UniProt subcellular location; MAN1B1 is a single-pass type II ER membrane protein.
Reason: Correct compartment; redundant with experimental IDA/EXP ER membrane annotations.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Single-pass type II membrane protein
|
|
GO:0005975
carbohydrate metabolic process
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Generic carbohydrate metabolic process from InterPro; far less informative than the specific N-glycan/mannose trimming and ERAD processes MAN1B1 participates in.
Reason: Over-general; the specific ER mannose trimming (GO:1904380) and ER N-glycan trimming (GO:0140277) terms better capture the biology.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
|
|
GO:0009100
glycoprotein metabolic process
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: Generic glycoprotein metabolic process from ARBA; correct in essence but far less informative than the specific N-glycan trimming and ERAD annotations.
Reason: Over-general parent process; the specific glycan-trimming/ERAD terms are preferred.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Involved in glycoprotein quality control targeting of misfolded glycoproteins for degradation
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Generic membrane localization from InterPro, superseded by the specific ER membrane annotation.
Reason: Uninformative parent; MAN1B1 is specifically an ER membrane protein.
Proposed replacements:
endoplasmic reticulum membrane
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
|
GO:0036503
ERAD pathway
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Electronic (ARBA) assignment of the ERAD pathway, consistent with experimental evidence that ERManI mannose trimming is required for ERAD.
Reason: Correct core biological process; redundant with IMP/IDA evidence.
Supporting Evidence:
PMID:18003979
required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-4793949 |
ACCEPT |
Summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-901024 |
ACCEPT |
Summary: Reactome curation of MAN1B1 hydrolysis of a 1,2-linked mannose (a branch).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-901036 |
ACCEPT |
Summary: Reactome curation of MAN1B1 hydrolysis of a second 1,2-linked mannose (a branch).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-901039 |
ACCEPT |
Summary: Reactome curation of MAN1B1 hydrolysis of a 1,2-linked mannose (c branch).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-901074 |
ACCEPT |
Summary: Reactome curation of MAN1B1/EDEM2 hydrolysis of a 1,2-linked mannose (b branch).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-9036008 |
ACCEPT |
Summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-9036011 |
ACCEPT |
Summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-9036012 |
ACCEPT |
Summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
Reason: Correct core molecular function; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
Reactome:R-HSA-9696807 |
ACCEPT |
Summary: Reactome curation of MAN1B1 mannosidase activity in the context of N-glycan mannose trimming of viral (SARS-CoV-2) spike.
Reason: Correct core molecular function acting on a viral glycoprotein substrate; redundant with experimental evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0140277
endoplasmic reticulum N-glycan trimming
|
IMP
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
ACCEPT |
Summary: Knockdown/inhibition of ERManI blocks N-glycan trimming in the ER, directly demonstrating its role in ER N-glycan trimming.
Reason: Core biological process with direct experimental (IMP) support.
Supporting Evidence:
PMID:18003979
required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
|
|
GO:0036503
ERAD pathway
|
IDA
PMID:10521544 Cloning and expression of a specific human alpha 1,2-mannosi... |
ACCEPT |
Summary: MAN1B1 generates the trimmed Man8B glycan that initiates the ERAD-targeting signal during N-glycan maturation.
Reason: Core biological process; ERManI mannose trimming commits misfolded glycoproteins to ERAD.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Involved in glycoprotein quality control targeting of misfolded glycoproteins for degradation
|
|
GO:1904380
endoplasmic reticulum mannose trimming
|
IDA
PMID:10521544 Cloning and expression of a specific human alpha 1,2-mannosi... |
ACCEPT |
Summary: The recombinant enzyme directly removes a single alpha-1,2-mannose from Man9GlcNAc to produce Man8GlcNAc isomer B, the first ER mannose-trimming step.
Reason: Core biological process with direct enzymatic (IDA) demonstration of ER mannose trimming.
Supporting Evidence:
PMID:10409699
the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis
|
|
GO:1904380
endoplasmic reticulum mannose trimming
|
IMP
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
ACCEPT |
Summary: ERManI knockdown impairs ER mannose trimming to Man5-6GlcNAc2 in cells, confirming its role in ER mannose trimming.
Reason: Core biological process with direct experimental (IMP) support.
Supporting Evidence:
PMID:18003979
required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
|
|
GO:0005789
endoplasmic reticulum membrane
|
IDA
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
ACCEPT |
Summary: ERManI is localized to the ER membrane and concentrates in the ER-derived quality control compartment.
Reason: Correct compartment with direct experimental support.
Supporting Evidence:
PMID:18003979
ERManI is strikingly concentrated together with the ERAD substrate in the pericentriolar ER-derived quality control compartment
|
|
GO:1904380
endoplasmic reticulum mannose trimming
|
TAS
Reactome:R-HSA-901032 |
ACCEPT |
Summary: Reactome curation of ER mannose trimming in the ER Quality Control Compartment pathway.
Reason: Correct core biological process; redundant with experimental evidence.
Supporting Evidence:
PMID:18003979
required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
EXP
PMID:15713668 Mechanism of class 1 (glycosylhydrolase family 47) alpha-man... |
ACCEPT |
Summary: Structural and kinetic study of the GH47 catalytic mechanism with active-site mutagenesis directly demonstrating the alpha-1,2-mannosidase activity.
Reason: Core molecular function with direct experimental (EXP) and structural support.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0005789
endoplasmic reticulum membrane
|
EXP
PMID:10409699 Identification, expression, and characterization of a cDNA e... |
ACCEPT |
Summary: Epitope-tagged ERManI displays an ER pattern of localization in cells, supporting ER membrane localization.
Reason: Correct compartment with experimental support.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
IMP
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
ACCEPT |
Summary: Functional knockdown/inhibition experiments tie loss of mannosidase activity to impaired N-glycan trimming, supporting the enables annotation.
Reason: Core molecular function consistent with direct enzymatic assays.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0036503
ERAD pathway
|
IMP
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
ACCEPT |
Summary: ERManI is required for ERAD of a model misfolded glycoprotein in cells; loss leads to accumulation of untrimmed glycans.
Reason: Core biological process with direct experimental (IMP) support.
Supporting Evidence:
PMID:18003979
required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
|
|
GO:0036503
ERAD pathway
|
IMP
PMID:21062743 Mannose trimming is required for delivery of a glycoprotein ... |
ACCEPT |
Summary: Mannose trimming by ERManI is required for handoff of a substrate glycoprotein from EDEM1 to the late ERAD lectin XTP3-B and the downstream HRD1/SCF(Fbs2) ligases.
Reason: Core biological process; experimentally links ERManI trimming to downstream ERAD steps.
Supporting Evidence:
PMID:21062743
Mannose trimming is required for delivery of a glycoprotein from EDEM1 to XTP3-B
|
|
GO:0019082
viral protein processing
|
TAS
Reactome:R-HSA-9694548 |
KEEP AS NON CORE |
Summary: Reactome annotation of MAN1B1 in N-glycan mannose trimming of the SARS-CoV-2 spike glycoprotein. This is the generic mannosidase activity acting on a viral glycoprotein substrate, not a distinct viral function.
Reason: Real but peripheral; reflects the core mannosidase activity applied to a viral substrate rather than a dedicated viral-processing role.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
EC=3.2.1.113
|
|
GO:0036510
trimming of terminal mannose on C branch
|
TAS
Reactome:R-HSA-901039 |
ACCEPT |
Summary: Reactome curation of the specific sub-step in which ERManI trims the terminal C-branch mannose; an accurate refinement of its trimming activity.
Reason: Correct specific sub-process of N-glycan mannose trimming.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
|
|
GO:0031410
cytoplasmic vesicle
|
IDA
PMID:25411339 Mammalian ER mannosidase I resides in quality control vesicl... |
ACCEPT |
Summary: At steady state ERManI resides in mobile ER-like quality control vesicles (QCVs) to which ERAD substrates are delivered, supporting a cytoplasmic vesicle localization.
Reason: Genuine localization with direct experimental support (QCVs).
Supporting Evidence:
PMID:25411339
quality control vesicles (QCVs) with ER-like density, to which ERAD substrates are delivered
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
IDA
PMID:10521544 Cloning and expression of a specific human alpha 1,2-mannosi... |
ACCEPT |
Summary: The recombinant human enzyme directly removes a single alpha-1,2-mannose from Man9GlcNAc to give Man8GlcNAc isomer B, directly demonstrating its mannosidase activity.
Reason: Core molecular function with direct enzymatic (IDA) support.
Supporting Evidence:
PMID:10409699
the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
IDA
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
ACCEPT |
Summary: ERManI is strikingly concentrated with ERAD substrate in the pericentriolar ER-derived quality control compartment (ERQC), where its high local concentration enables extensive trimming.
Reason: Genuine, functionally important localization with direct experimental support.
Supporting Evidence:
PMID:18003979
ERManI is strikingly concentrated together with the ERAD substrate in the pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
PMID:21062743 Mannose trimming is required for delivery of a glycoprotein ... |
ACCEPT |
Summary: ERQC localization asserted in the context of ERManI-dependent ERAD substrate delivery.
Reason: Consistent with direct IDA evidence for ERQC localization.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
IDA
PMID:22160784 In vitro mannose trimming property of human ER alpha-1,2 man... |
ACCEPT |
Summary: In vitro assays show recombinant hERManI generates Man6GlcNAc2 and Man5GlcNAc2 and preferentially trims misfolded glycoproteins, directly demonstrating its mannosidase activity and conformational selectivity.
Reason: Core molecular function with direct in vitro enzymatic (IDA) support.
Supporting Evidence:
PMID:22160784
generated Man(6)GlcNAc(2)-PA and Man(5)GlcNAc(2)-PA from 100 ΞΌM
|
|
GO:0005783
endoplasmic reticulum
|
TAS
PMID:22160784 In vitro mannose trimming property of human ER alpha-1,2 man... |
ACCEPT |
Summary: ER localization asserted in an in vitro mannose-trimming study; consistent with the established ER residence of ERManI.
Reason: Correct compartment; redundant with experimental ER membrane annotations.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
|
GO:0005794
Golgi apparatus
|
TAS
PMID:22160784 In vitro mannose trimming property of human ER alpha-1,2 man... |
KEEP AS NON CORE |
Summary: A Golgi localization has been reported for ERManI, but later work attributes the apparent Golgi pattern to membrane disturbance during immunofluorescence; ERManI functions in the ER/ERQC, not the Golgi.
Reason: Disputed/likely fixation artifact; not a genuine site of action. Retained as non-core rather than removed because a TAS source asserts it.
Supporting Evidence:
PMID:25411339
Golgi pattern
|
|
GO:1903561
extracellular vesicle
|
HDA
PMID:24769233 Proteomic analysis of cerebrospinal fluid extracellular vesi... |
KEEP AS NON CORE |
Summary: High-throughput proteomic detection of MAN1B1 in cerebrospinal fluid extracellular vesicles; a real but peripheral detection unrelated to its ER catalytic function.
Reason: Large-scale proteomics detection; not a functional site of action.
Supporting Evidence:
PMID:24769233
cerebrospinal fluid
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-4793949 |
ACCEPT |
Summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-9036008 |
ACCEPT |
Summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-9036011 |
ACCEPT |
Summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-9036012 |
ACCEPT |
Summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0016020
membrane
|
HDA
PMID:19946888 Defining the membrane proteome of NK cells. |
MARK AS OVER ANNOTATED |
Summary: High-throughput membrane proteome detection of MAN1B1; consistent with its membrane anchoring but uninformative relative to the specific ER membrane term.
Reason: Generic membrane term from proteomics; MAN1B1 is specifically an ER membrane protein.
Proposed replacements:
endoplasmic reticulum membrane
Supporting Evidence:
PMID:19946888
membrane proteome
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-901024 |
ACCEPT |
Summary: Reactome curation of ERQC localization.
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-901036 |
ACCEPT |
Summary: Reactome curation of ERQC localization.
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-901039 |
ACCEPT |
Summary: Reactome curation of ERQC localization.
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-901074 |
ACCEPT |
Summary: Reactome curation of ERQC localization.
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0044322
endoplasmic reticulum quality control compartment
|
TAS
Reactome:R-HSA-9696807 |
ACCEPT |
Summary: Reactome curation of ERQC localization in the spike N-glycan trimming pathway.
Reason: Correct compartment; redundant with IDA ERQC evidence.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
IDA
PMID:12090241 The specificity of the yeast and human class I ER alpha 1,2-... |
ACCEPT |
Summary: Demonstrates that the human class I ER alpha-1,2-mannosidase can trim beyond a single mannose, refining the specificity of the mannosidase activity.
Reason: Core molecular function with direct experimental support; informs the broader-than-single-residue specificity underlying the mannose timer.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
at high enzyme concentrations, as found in the ER
|
|
GO:0005783
endoplasmic reticulum
|
IDA
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
ACCEPT |
Summary: Direct evidence for ER localization of ERManI.
Reason: Correct site of action with direct experimental support.
Supporting Evidence:
PMID:18003979
pericentriolar ER-derived quality control compartment
|
|
GO:0016020
membrane
|
IDA
PMID:18003979 Endoplasmic reticulum (ER) mannosidase I is compartmentalize... |
MARK AS OVER ANNOTATED |
Summary: Generic membrane localization; superseded by the specific ER membrane annotation from the same evidence.
Reason: Uninformative parent of the specific ER membrane localization.
Proposed replacements:
endoplasmic reticulum membrane
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
PMID:10409699 Identification, expression, and characterization of a cDNA e... |
ACCEPT |
Summary: Identification and characterization of human ER mannosidase I as the enzyme catalyzing the first mannose-trimming step.
Reason: Core molecular function with strong experimental basis.
Supporting Evidence:
PMID:10409699
the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis
|
|
GO:0005783
endoplasmic reticulum
|
TAS
PMID:10409699 Identification, expression, and characterization of a cDNA e... |
ACCEPT |
Summary: ER localization asserted from the original characterization of ER mannosidase I.
Reason: Correct site of action; consistent with experimental ER membrane evidence.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
|
GO:0009311
oligosaccharide metabolic process
|
TAS
PMID:10409699 Identification, expression, and characterization of a cDNA e... |
MARK AS OVER ANNOTATED |
Summary: Generic oligosaccharide metabolic process; correct but far less informative than the specific N-glycan/mannose trimming terms.
Reason: Over-general parent process; the specific ER mannose trimming term is preferred.
Supporting Evidence:
PMID:10409699
Asn-linked oligosaccharide biosynthesis
|
|
GO:0004571
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
|
TAS
PMID:10521544 Cloning and expression of a specific human alpha 1,2-mannosi... |
ACCEPT |
Summary: Original cloning/characterization establishing the specific human alpha-1,2-mannosidase activity producing Man8GlcNAc2 isomer B.
Reason: Core molecular function with strong experimental basis.
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
|
|
GO:0005509
calcium ion binding
|
TAS
PMID:10521544 Cloning and expression of a specific human alpha 1,2-mannosi... |
KEEP AS NON CORE |
Summary: Calcium is required for ERManI activity; this is a structural/catalytic cofactor requirement of the GH47 fold rather than an independent calcium-signaling function.
Reason: Real cofactor requirement but subsidiary to the catalytic mannosidase activity.
Supporting Evidence:
PMID:10521544
Calcium is required for enzyme activity
|
|
GO:0016020
membrane
|
TAS
PMID:10521544 Cloning and expression of a specific human alpha 1,2-mannosi... |
MARK AS OVER ANNOTATED |
Summary: Generic membrane localization; superseded by the specific ER membrane annotation.
Reason: Uninformative parent; MAN1B1 is specifically an ER membrane protein.
Proposed replacements:
endoplasmic reticulum membrane
Supporting Evidence:
file:human/MAN1B1/MAN1B1-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
|
Q: What determines the conformational selectivity by which ERManI preferentially trims mannoses from misfolded versus correctly folded glycoproteins, and is this intrinsic to the enzyme or dependent on ERQC cofactors?
Q: How is the high local concentration of ERManI in quality control vesicles/ERQC regulated to tune the kinetics of the mannose timer?
Experiment: Reconstitute ERManI trimming on defined folded versus misfolded glycoprotein substrates at controlled enzyme concentrations to quantify how local concentration and substrate conformation set the rate of progression from Man9 to Man5-6.
Experiment: Live-cell imaging of QCV/ERQC dynamics in cells expressing wild-type versus Rafiq-syndrome (R334C, E397K) MAN1B1 variants to test how disease mutations affect localization, vesicle trafficking, and ERAD substrate clearance.
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
The target gene/protein in this report is human MAN1B1, encoding endoplasmic reticulum Ξ±-1,2-mannosidase I (ERManI), a type II membrane class I Ξ±1,2-mannosidase of the glycosyl hydrolase 47 (GH47) family. This identity (MAN1B1 β ERManI) and architecture (N-terminal cytosolic tail, TM helix, luminal catalytic domain) are explicitly described in mechanistic studies on human Man1b1/ERManI. (pan2011golgilocalizationof pages 1-2, sun2020thecytoplasmictail pages 1-3)
Key canonical references used for gene/protein verification and function:
- Pan et al., Molecular Biology of the Cell (2011-08). https://doi.org/10.1091/mbc.e11-02-0118 (pan2011golgilocalizationof pages 1-2)
- Benyair et al., Molecular Biology of the Cell (2015-01). https://doi.org/10.1091/mbc.e14-06-1152 (benyair2015mammalianermannosidase pages 1-2)
- Sun et al., PNAS (2020-09). https://doi.org/10.1073/pnas.1919013117 (sun2020thecytoplasmictail pages 1-1)
- Rymen et al., PLoS Genetics (2013-12). https://doi.org/10.1371/journal.pgen.1003989 (rymen2013man1b1deficiencyan pages 1-2)
MAN1B1/ERManI is a class I Ξ±1,2-mannosidase that cleaves Ξ±1,2-linked mannose residues from high-mannose N-glycans. In the context of N-glycan processing and quality control, it is widely implicated in generating demannosylated glycan structures that can serve as sorting signals for misfolded glycoprotein disposal. (pan2011golgilocalizationof pages 2-3, benyair2015mammalianermannosidase pages 1-2)
A central and clinically relevant activity attributed to MAN1B1 is trimming Man9GlcNAc2 β Man8GlcNAc2 isomer B by removing the terminal mannose on the middle (B) branch, which has been described as a recognized degradation-related signal. (rymen2013man1b1deficiencyan pages 1-2, benyair2015mammalianermannosidase pages 1-2)
Benyair et al. further report that ERManI trims Ξ±1,2-linked mannose residues with preference for the B-branch terminal mannose, supporting a branch preference relevant to ER quality control timing. (benyair2015mammalianermannosidase pages 1-2, benyair2015mammalianermannosidase pages 2-4)
MAN1B1 is mechanistically linked to N-glycan-dependent ER quality control (ERQC) and ERAD. In this model, progressive demannosylation helps drive misfolded glycoproteins away from productive folding cycles and toward degradative pathways. Pan et al. describe ERManI as being capable of cleaving Ξ±1,2-mannose residues from Man9GlcNAc2 and show that wild-type ERManI can accelerate degradation of a model misfolded substrate (NHK), supporting its ERAD role. (pan2011golgilocalizationof pages 2-3, pan2011golgilocalizationof pages 9-10)
A key area of expert discussion is where MAN1B1 resides at steady state and where it encounters substrates.
Golgi/cis-Golgi model: Pan et al. report endogenous ERManI as predominantly Golgi-localized, proposing spatial separation between folding/retention steps and later quality control tagging steps. In this view, Golgi localization is apparently important for its functional impact on ERAD, and forced redistribution can change trimming without necessarily increasing degradation. (pan2011golgilocalizationof pages 1-2, pan2011golgilocalizationof pages 9-10)
ER-derived QCV/ERQC model: Benyair et al. provide evidence that ERManI resides in quality control vesicles (QCVs) with ER-like density, separated from Golgi fractions, and localizes to a perinuclear ERQC region under stress. They note that fixation/immunofluorescence artifacts can make ERManI appear Golgi-localized, arguing that QCV/ERQC localization better explains substrate encounter. (benyair2015mammalianermannosidase pages 1-2, benyair2015mammalianermannosidase pages 2-4)
Taken together, these studies support a trafficking- and stress-sensitive compartmentalization model: MAN1B1 likely operates at the interface of ER and early secretory compartments, with localization influenced by cycling/vesicular organization, and its functional coupling to ERAD can depend on that compartmentalization. (pan2011golgilocalizationof pages 9-10, benyair2015mammalianermannosidase pages 2-4)
The classical role is that the luminal catalytic domain trims mannose residues on N-glycans to create or promote degradative glycan signatures. Pan et al. show that ERManI expression can accelerate NHK degradation, consistent with a catalytic contribution to ERAD. (pan2011golgilocalizationof pages 2-3, pan2011golgilocalizationof pages 9-10)
Sun et al. (PNAS, 2020-09-29) provide strong evidence that MAN1B1 has a second separable role: an unconventional, catalysis-independent pathway controlled by the evolutionarily extended N-terminal cytoplasmic tail.
Key experimental findings include:
- Tail involvement: deletion of residues 1β54 impairs Man1b1βs ability to accelerate degradation of misfolded AAT variants. (sun2020thecytoplasmictail pages 1-3, sun2020thecytoplasmictail pages 5-7)
- Independence from catalytic activity: the catalytic-dead mutant D463N still supports aspects of the unconventional clearance pathway, and combined tail deletion + catalytic inactivation strongly reduces clearance, consistent with two partially independent contributions. (sun2020thecytoplasmictail pages 3-4)
- Independence from substrate N-glycans: tail-mediated elimination of misfolded AAT was reported to be independent of the clientβs glycosylation status, indicating this pathway does not require glycan trimming on the substrate. (sun2020thecytoplasmictail pages 1-1, sun2020thecytoplasmictail pages 5-7)
- Endpoint: proteasomal degradation is a key endpoint for Man1b1-promoted NHK degradation, supported by proteasome inhibitor effects. (sun2020thecytoplasmictail pages 5-7)
This tail-mediated function is an important modern refinement of MAN1B1 functional annotation because it implies MAN1B1 can contribute to proteostasis beyond direct substrate demannosylation. (sun2020thecytoplasmictail pages 9-11, sun2020thecytoplasmictail pages 1-1)
Rymen et al. (PLoS Genetics, 2013-12-05) identified biallelic MAN1B1 mutations causing a CDG-II phenotype (often referred to as MAN1B1-CDG and clinically associated with Rafiq syndrome). The phenotype described includes developmental delay/psychomotor retardation, facial dysmorphism, and truncal obesity, and patient fibroblasts showed markedly dilated and fragmented Golgi morphology, supporting secretory-pathway involvement. (rymen2013man1b1deficiencyan pages 1-2, rymen2013man1b1deficiencyan pages 2-3)
Rymen et al. provide quantitative and structural biomarker evidence:
- Transferrin pattern: serum transferrin isoelectrofocusing showed a type 2 pattern with markedly increased trisialotransferrin (31β41%) versus normal (1β8%). (rymen2013man1b1deficiencyan pages 3-4)
- Hybrid N-glycans: N-glycan mass spectrometry revealed accumulation of hybrid-type glycans, including NeuAc1Hex6HexNAc3 (m/z 2390) and NeuAc1Hex5HexNAc3 (m/z 2186), often with fucosylated counterparts; these species were reported absent in controls. (rymen2013man1b1deficiencyan pages 3-4)
- Processing delay: metabolic labeling/pulse-chase in patient fibroblasts showed delayed trimming of Man9GlcNAc2 to Man8GlcNAc2 with accumulation of Man9GlcNAc2 and Glc1Man9GlcNAc2 species. (rymen2013man1b1deficiencyan pages 4-7)
Visual evidence supporting these diagnostic findings (transferrin profiles and MALDI-TOF N-glycan profiles) was retrieved from the paperβs figures. (rymen2013man1b1deficiencyan media f357a49a, rymen2013man1b1deficiencyan media 50a6e23d, rymen2013man1b1deficiencyan media 194a2f89)
A later diagnostic review emphasizes that the presence of hybrid glycans on transferrin may be indicative of MAN1B1-CDG, underscoring that this remains a clinically actionable glycan signature. (Wada, 2025-02-14; https://doi.org/10.5702/massspectrometry.a0169) (wada2025massspectrometryas pages 5-6)
A 2023 study developed a targeted glyco/deglycoproteomics workflow using kifunensine (a class I mannosidase inhibitor) to delineate oligomannosidic glycoproteins and glycosites in the early secretory pathway. Although not MAN1B1-specific, this work operationalizes how MAN1B1-class trimming is perturbed and quantified at scale (lectin enrichment + Endo H digestion + high-resolution MS), enabling identification of class I mannosidase-dependent substrate candidates relevant to ERQC/ERAD biology. (Munteanu et al., 2023-01-10; https://doi.org/10.3389/fmolb.2022.1064868) (munteanu2023definingthealtered pages 1-2, munteanu2023definingthealtered pages 2-3)
This paper also explicitly states that class I mannosidases cleave only Ξ±1,2-linked mannose residues and that kifunensine leads to accumulation of unprocessed oligomannose (e.g., Man9) glycoformsβimportant experimental context for functional studies of MAN1B1. (munteanu2023definingthealtered pages 7-8)
Baz et al. (Frontiers in Pediatrics, 2024-04-25) provide real-world evidence that clinical exome sequencing ordered by general pediatricians can identify MAN1B1-related disease. They report a patient homozygous for MAN1B1 NM_016219.5:c.2072A>G p.(His691Arg) diagnosed with Rafiq syndrome (OMIM #614202) (in a dual molecular diagnosis). (https://doi.org/10.3389/fped.2024.1392444) (baz2024clinicalexomesequencing pages 5-6, baz2024clinicalexomesequencing pages 4-5)
Quantitatively, their cohort (n=30) had:
- Diagnostic yield: 11/30 (36.7%) positive; 3/30 (10%) VUS; 16/30 (53%) negative. (baz2024clinicalexomesequencing pages 1-2, baz2024clinicalexomesequencing pages 2-3)
- Reported clinical utility in all 11/11 positive cases (100%), with several downstream impacts (e.g., subsequent testing, targeted therapy). (baz2024clinicalexomesequencing pages 1-2, baz2024clinicalexomesequencing pages 2-3)
These 2024 data primarily advance MAN1B1βs clinical implementation context (diagnostic workflows and utility), rather than revising its enzymology.
Current diagnostic practice supported by the cited literature combines:
1) Genetic diagnosis (exome sequencing) for suspected syndromic neurodevelopmental phenotypes (e.g., Rafiq syndrome diagnosis via homozygous MAN1B1 variant). (baz2024clinicalexomesequencing pages 5-6, yalcintepe2023clinicalexomesequencing pages 5-8)
2) Biochemical confirmation / pathway localization using:
- Transferrin isoelectrofocusing/capillary zone electrophoresis to detect CDG-II patterns and quantify abnormal trisialotransferrin. (rymen2013man1b1deficiencyan pages 3-4)
- Serum N-glycan MS (e.g., MALDI-TOF of permethylated N-glycans) identifying hybrid glycan accumulation, including specific m/z species. (rymen2013man1b1deficiencyan pages 3-4)
Primary papers provide conflicting steady-state localizations (Golgi vs ER-derived QCV/ERQC). Pan et al. propose a Golgi-localized ERManI model linked to ERAD regulation, whereas Benyair et al. argue Golgi appearance can be artifactual and support QCV localization using fractionation and optimized imaging. (pan2011golgilocalizationof pages 1-2, benyair2015mammalianermannosidase pages 1-2)
A reasonable synthesis of these authoritative sources is that MAN1B1 is part of a distributed quality-control network whose functional output depends on dynamic trafficking and compartment convergence under stress, rather than being restricted to a single static organelle address. (pan2011golgilocalizationof pages 9-10, benyair2015mammalianermannosidase pages 2-4)
Sun et al. add a conceptually important refinement: MAN1B1 is not solely a glycan-trimming timer but can also participate in catalysis-independent, glycan-independent degradation promotion via its cytosolic tail. This creates a framework where pathogenic MAN1B1 variants could impair one or both functional axes (enzymatic trimming and/or trafficking/recruitment functions), potentially contributing to variable phenotypes. (sun2020thecytoplasmictail pages 1-1, sun2020thecytoplasmictail pages 3-4)
The following table consolidates the major functional and clinical claims with supporting evidence.
| Topic | Key points | Representative evidence/source | Citation IDs |
|---|---|---|---|
| Identity/domains | β’ Human MAN1B1 encodes ERManI/ER Ξ±1,2-mannosidase I linked to UniProt Q9UKM7. β’ It is a type II membrane glycosidase in the GH47/class I Ξ±1,2-mannosidase family. β’ Protein architecture includes an N-terminal cytosolic tail, TM segment, and luminal catalytic domain. |
Pan 2011; Sun 2020 | (pan2011golgilocalizationof pages 1-2, sun2020thecytoplasmictail pages 1-3) |
| Catalytic reaction | β’ Catalyzes removal of Ξ±1,2-linked mannose residues from high-mannose N-glycans. β’ Canonical reaction highlighted for MAN1B1 is Man9GlcNAc2 β Man8GlcNAc2 isomer B. β’ Overexpression studies also support further trimming toward Man5-7GlcNAc2 in cells. |
Rymen 2013; Pan 2011; Zhang 2021 review | (rymen2013man1b1deficiencyan pages 1-2, pan2011golgilocalizationof pages 2-3, zhang2021thecrucialrole pages 14-15) |
| Substrate specificity | β’ Shows preference for the B-branch terminal mannose of Man9GlcNAc2. β’ Substrates are mainly N-glycosylated secretory pathway glycoproteins, especially misfolded ERAD clients. β’ Class I mannosidases cleave only Ξ±1,2-linked mannose residues; kifunensine blocks this processing and causes Man9 accumulation. |
Benyair 2015; Munteanu 2023 | (benyair2015mammalianermannosidase pages 1-2, benyair2015mammalianermannosidase pages 2-4, munteanu2023definingthealtered pages 7-8) |
| Localization | β’ Localization is debated/dynamic: endogenous MAN1B1 was reported in the Golgi/cis-Golgi by some studies. β’ Other work places it in ER-derived quality control vesicles (QCVs) and the ER quality control compartment (ERQC), distinct from Golgi under optimized imaging/fractionation. β’ Trafficking/localization may be stress-sensitive and influenced by COPI/COPII-related cycling. |
Pan 2011; Rymen 2013; Benyair 2015 | (pan2011golgilocalizationof pages 1-2, rymen2013man1b1deficiencyan pages 2-3, benyair2015mammalianermannosidase pages 1-2, benyair2015mammalianermannosidase pages 2-4) |
| ERAD roles | β’ Mannose trimming by MAN1B1 helps generate the glycan timer/sorting signal that routes terminally misfolded glycoproteins from folding cycles to ER-associated degradation (ERAD). β’ WT MAN1B1 accelerates degradation of model ERAD substrates such as NHK and influences degradation of ATZ/PIZ-related clients. β’ Inhibition or knockdown of class I mannosidase activity impairs ERAD, supporting a causal role. |
Pan 2011; Zhang 2021 review; Munteanu 2023 | (pan2011golgilocalizationof pages 9-10, pan2011golgilocalizationof pages 2-3, zhang2021thecrucialrole pages 14-15, munteanu2023definingthealtered pages 1-2) |
| Catalysis-independent role | β’ MAN1B1 has a second, catalysis-independent quality-control activity mediated by the N-terminal cytoplasmic tail (aa 1-54). β’ This pathway can promote proteasomal degradation of misfolded AAT variants even when MAN1B1 catalytic activity is disabled. β’ Tail-dependent activity is independent of N-glycans on the client substrate, implying a noncanonical recruitment/sorting role. |
Sun 2020 | (sun2020thecytoplasmictail pages 9-11, sun2020thecytoplasmictail pages 1-1, sun2020thecytoplasmictail pages 5-7, sun2020thecytoplasmictail pages 3-4) |
| Disease association | β’ Biallelic MAN1B1 variants cause MAN1B1-CDG / Rafiq syndrome, a CDG-II processing defect. β’ Core phenotype includes developmental delay/intellectual disability, facial dysmorphism, and often truncal obesity. β’ Patient cells also show Golgi fragmentation/dilatation, linking enzyme deficiency to secretory-pathway dysfunction. |
Rymen 2013; Baz 2024; Yalcintepe 2023 | (rymen2013man1b1deficiencyan pages 1-2, rymen2013man1b1deficiencyan pages 2-3, baz2024clinicalexomesequencing pages 5-6, yalcintepe2023clinicalexomesequencing pages 5-8) |
| Diagnostic biomarkers | β’ Serum transferrin testing shows a type II pattern with markedly increased trisialotransferrin. β’ Serum N-glycan MS reveals distinctive hybrid glycans, including NeuAc1Hex6HexNAc3 and NeuAc1Hex5HexNAc3, often with fucosylated counterparts. β’ A 2025 diagnostic review highlights hybrid glycans on transferrin as a characteristic clue for MAN1B1-CDG. |
Rymen 2013; Wada 2025 | (rymen2013man1b1deficiencyan pages 3-4, rymen2013man1b1deficiencyan pages 4-7, wada2025massspectrometryas pages 5-6) |
| Experimental tools/applications | β’ Kifunensine is a widely used class I mannosidase inhibitor to probe MAN1B1-class trimming and ERQC/ERAD function. β’ Modern workflows combine lectin enrichment, Endo H digestion, and LC-MS/MS glycoproteomics to identify class I mannosidase-dependent substrates. β’ Clinical implementation includes exome sequencing plus transferrin glycoform/MS glycan profiling for diagnosis. |
Munteanu 2023; Wada 2025; Baz 2024 | (munteanu2023definingthealtered pages 2-3, munteanu2023definingthealtered pages 1-2, munteanu2023definingthealtered pages 7-8, wada2025massspectrometryas pages 5-6, baz2024clinicalexomesequencing pages 1-2) |
| Recent (2023-2024) developments | β’ 2023 glycoproteomics work expanded practical mapping of class I mannosidase-sensitive glycoproteins and early secretory pathway cargo under kifunensine perturbation. β’ 2024 clinical exome data show real-world diagnostic utility, including a patient diagnosed with Rafiq syndrome due to homozygous MAN1B1 p.His691Arg. β’ Recent disease-focused literature emphasizes improved molecular diagnostics and phenotypic recognition of glycosylation disorders, including MAN1B1-CDG. |
Munteanu 2023; Baz 2024 | (munteanu2023definingthealtered pages 2-3, munteanu2023definingthealtered pages 1-2, baz2024clinicalexomesequencing pages 5-6, baz2024clinicalexomesequencing pages 4-5) |
Table: This table summarizes the core functional annotation of human MAN1B1/ERManI, including catalytic activity, localization, ERAD roles, disease links, and recent diagnostic/experimental developments. It is useful as a compact evidence map for interpreting the geneβs molecular function and clinical relevance.
References
(pan2011golgilocalizationof pages 1-2): Shujuan Pan, Shufang Wang, Budi Utama, Lu Huang, Neil Blok, Mary K. Estes, Kelley W. Moremen, and Richard N. Sifers. Golgi localization of ermani defines spatial separation of the mammalian glycoprotein quality control system. Molecular Biology of the Cell, 22:2810-2822, Aug 2011. URL: https://doi.org/10.1091/mbc.e11-02-0118, doi:10.1091/mbc.e11-02-0118. This article has 95 citations and is from a domain leading peer-reviewed journal.
(sun2020thecytoplasmictail pages 1-3): Ashlee H. Sun, John R. Collette, and Richard N. Sifers. The cytoplasmic tail of human mannosidase man1b1 contributes to catalysis-independent quality control of misfolded alpha1-antitrypsin. Proceedings of the National Academy of Sciences, 117:24825-24836, Sep 2020. URL: https://doi.org/10.1073/pnas.1919013117, doi:10.1073/pnas.1919013117. This article has 23 citations and is from a highest quality peer-reviewed journal.
(benyair2015mammalianermannosidase pages 1-2): Ron Benyair, Navit Ogen-Shtern, Niv Mazkereth, Ben Shai, Marcelo Ehrlich, and Gerardo Z. Lederkremer. Mammalian er mannosidase i resides in quality control vesicles, where it encounters its glycoprotein substrates. Molecular Biology of the Cell, 26:172-184, Jan 2015. URL: https://doi.org/10.1091/mbc.e14-06-1152, doi:10.1091/mbc.e14-06-1152. This article has 74 citations and is from a domain leading peer-reviewed journal.
(sun2020thecytoplasmictail pages 1-1): Ashlee H. Sun, John R. Collette, and Richard N. Sifers. The cytoplasmic tail of human mannosidase man1b1 contributes to catalysis-independent quality control of misfolded alpha1-antitrypsin. Proceedings of the National Academy of Sciences, 117:24825-24836, Sep 2020. URL: https://doi.org/10.1073/pnas.1919013117, doi:10.1073/pnas.1919013117. This article has 23 citations and is from a highest quality peer-reviewed journal.
(rymen2013man1b1deficiencyan pages 1-2): Daisy Rymen, Romain Peanne, MarΓa B. MillΓ³n, ValΓ©rie Race, Luisa Sturiale, Domenico Garozzo, Philippa Mills, Peter Clayton, Carla G. Asteggiano, Dulce Quelhas, Ali Cansu, Esmeralda Martins, Marie-CΓ©cile Nassogne, Miguel GonΓ§alves-Rocha, Haluk Topaloglu, Jaak Jaeken, FranΓ§ois Foulquier, and Gert Matthijs. Man1b1 deficiency: an unexpected cdg-ii. PLoS Genetics, 9:e1003989, Dec 2013. URL: https://doi.org/10.1371/journal.pgen.1003989, doi:10.1371/journal.pgen.1003989. This article has 102 citations and is from a domain leading peer-reviewed journal.
(pan2011golgilocalizationof pages 2-3): Shujuan Pan, Shufang Wang, Budi Utama, Lu Huang, Neil Blok, Mary K. Estes, Kelley W. Moremen, and Richard N. Sifers. Golgi localization of ermani defines spatial separation of the mammalian glycoprotein quality control system. Molecular Biology of the Cell, 22:2810-2822, Aug 2011. URL: https://doi.org/10.1091/mbc.e11-02-0118, doi:10.1091/mbc.e11-02-0118. This article has 95 citations and is from a domain leading peer-reviewed journal.
(benyair2015mammalianermannosidase pages 2-4): Ron Benyair, Navit Ogen-Shtern, Niv Mazkereth, Ben Shai, Marcelo Ehrlich, and Gerardo Z. Lederkremer. Mammalian er mannosidase i resides in quality control vesicles, where it encounters its glycoprotein substrates. Molecular Biology of the Cell, 26:172-184, Jan 2015. URL: https://doi.org/10.1091/mbc.e14-06-1152, doi:10.1091/mbc.e14-06-1152. This article has 74 citations and is from a domain leading peer-reviewed journal.
(pan2011golgilocalizationof pages 9-10): Shujuan Pan, Shufang Wang, Budi Utama, Lu Huang, Neil Blok, Mary K. Estes, Kelley W. Moremen, and Richard N. Sifers. Golgi localization of ermani defines spatial separation of the mammalian glycoprotein quality control system. Molecular Biology of the Cell, 22:2810-2822, Aug 2011. URL: https://doi.org/10.1091/mbc.e11-02-0118, doi:10.1091/mbc.e11-02-0118. This article has 95 citations and is from a domain leading peer-reviewed journal.
(sun2020thecytoplasmictail pages 5-7): Ashlee H. Sun, John R. Collette, and Richard N. Sifers. The cytoplasmic tail of human mannosidase man1b1 contributes to catalysis-independent quality control of misfolded alpha1-antitrypsin. Proceedings of the National Academy of Sciences, 117:24825-24836, Sep 2020. URL: https://doi.org/10.1073/pnas.1919013117, doi:10.1073/pnas.1919013117. This article has 23 citations and is from a highest quality peer-reviewed journal.
(sun2020thecytoplasmictail pages 3-4): Ashlee H. Sun, John R. Collette, and Richard N. Sifers. The cytoplasmic tail of human mannosidase man1b1 contributes to catalysis-independent quality control of misfolded alpha1-antitrypsin. Proceedings of the National Academy of Sciences, 117:24825-24836, Sep 2020. URL: https://doi.org/10.1073/pnas.1919013117, doi:10.1073/pnas.1919013117. This article has 23 citations and is from a highest quality peer-reviewed journal.
(sun2020thecytoplasmictail pages 9-11): Ashlee H. Sun, John R. Collette, and Richard N. Sifers. The cytoplasmic tail of human mannosidase man1b1 contributes to catalysis-independent quality control of misfolded alpha1-antitrypsin. Proceedings of the National Academy of Sciences, 117:24825-24836, Sep 2020. URL: https://doi.org/10.1073/pnas.1919013117, doi:10.1073/pnas.1919013117. This article has 23 citations and is from a highest quality peer-reviewed journal.
(rymen2013man1b1deficiencyan pages 2-3): Daisy Rymen, Romain Peanne, MarΓa B. MillΓ³n, ValΓ©rie Race, Luisa Sturiale, Domenico Garozzo, Philippa Mills, Peter Clayton, Carla G. Asteggiano, Dulce Quelhas, Ali Cansu, Esmeralda Martins, Marie-CΓ©cile Nassogne, Miguel GonΓ§alves-Rocha, Haluk Topaloglu, Jaak Jaeken, FranΓ§ois Foulquier, and Gert Matthijs. Man1b1 deficiency: an unexpected cdg-ii. PLoS Genetics, 9:e1003989, Dec 2013. URL: https://doi.org/10.1371/journal.pgen.1003989, doi:10.1371/journal.pgen.1003989. This article has 102 citations and is from a domain leading peer-reviewed journal.
(rymen2013man1b1deficiencyan pages 3-4): Daisy Rymen, Romain Peanne, MarΓa B. MillΓ³n, ValΓ©rie Race, Luisa Sturiale, Domenico Garozzo, Philippa Mills, Peter Clayton, Carla G. Asteggiano, Dulce Quelhas, Ali Cansu, Esmeralda Martins, Marie-CΓ©cile Nassogne, Miguel GonΓ§alves-Rocha, Haluk Topaloglu, Jaak Jaeken, FranΓ§ois Foulquier, and Gert Matthijs. Man1b1 deficiency: an unexpected cdg-ii. PLoS Genetics, 9:e1003989, Dec 2013. URL: https://doi.org/10.1371/journal.pgen.1003989, doi:10.1371/journal.pgen.1003989. This article has 102 citations and is from a domain leading peer-reviewed journal.
(rymen2013man1b1deficiencyan pages 4-7): Daisy Rymen, Romain Peanne, MarΓa B. MillΓ³n, ValΓ©rie Race, Luisa Sturiale, Domenico Garozzo, Philippa Mills, Peter Clayton, Carla G. Asteggiano, Dulce Quelhas, Ali Cansu, Esmeralda Martins, Marie-CΓ©cile Nassogne, Miguel GonΓ§alves-Rocha, Haluk Topaloglu, Jaak Jaeken, FranΓ§ois Foulquier, and Gert Matthijs. Man1b1 deficiency: an unexpected cdg-ii. PLoS Genetics, 9:e1003989, Dec 2013. URL: https://doi.org/10.1371/journal.pgen.1003989, doi:10.1371/journal.pgen.1003989. This article has 102 citations and is from a domain leading peer-reviewed journal.
(rymen2013man1b1deficiencyan media f357a49a): Daisy Rymen, Romain Peanne, MarΓa B. MillΓ³n, ValΓ©rie Race, Luisa Sturiale, Domenico Garozzo, Philippa Mills, Peter Clayton, Carla G. Asteggiano, Dulce Quelhas, Ali Cansu, Esmeralda Martins, Marie-CΓ©cile Nassogne, Miguel GonΓ§alves-Rocha, Haluk Topaloglu, Jaak Jaeken, FranΓ§ois Foulquier, and Gert Matthijs. Man1b1 deficiency: an unexpected cdg-ii. PLoS Genetics, 9:e1003989, Dec 2013. URL: https://doi.org/10.1371/journal.pgen.1003989, doi:10.1371/journal.pgen.1003989. This article has 102 citations and is from a domain leading peer-reviewed journal.
(rymen2013man1b1deficiencyan media 50a6e23d): Daisy Rymen, Romain Peanne, MarΓa B. MillΓ³n, ValΓ©rie Race, Luisa Sturiale, Domenico Garozzo, Philippa Mills, Peter Clayton, Carla G. Asteggiano, Dulce Quelhas, Ali Cansu, Esmeralda Martins, Marie-CΓ©cile Nassogne, Miguel GonΓ§alves-Rocha, Haluk Topaloglu, Jaak Jaeken, FranΓ§ois Foulquier, and Gert Matthijs. Man1b1 deficiency: an unexpected cdg-ii. PLoS Genetics, 9:e1003989, Dec 2013. URL: https://doi.org/10.1371/journal.pgen.1003989, doi:10.1371/journal.pgen.1003989. This article has 102 citations and is from a domain leading peer-reviewed journal.
(rymen2013man1b1deficiencyan media 194a2f89): Daisy Rymen, Romain Peanne, MarΓa B. MillΓ³n, ValΓ©rie Race, Luisa Sturiale, Domenico Garozzo, Philippa Mills, Peter Clayton, Carla G. Asteggiano, Dulce Quelhas, Ali Cansu, Esmeralda Martins, Marie-CΓ©cile Nassogne, Miguel GonΓ§alves-Rocha, Haluk Topaloglu, Jaak Jaeken, FranΓ§ois Foulquier, and Gert Matthijs. Man1b1 deficiency: an unexpected cdg-ii. PLoS Genetics, 9:e1003989, Dec 2013. URL: https://doi.org/10.1371/journal.pgen.1003989, doi:10.1371/journal.pgen.1003989. This article has 102 citations and is from a domain leading peer-reviewed journal.
(wada2025massspectrometryas pages 5-6): Yoshinao Wada. Mass spectrometry as a first-line diagnostic aid for congenital disorders of glycosylation. Mass Spectrometry, 14:A0169-A0169, Feb 2025. URL: https://doi.org/10.5702/massspectrometry.a0169, doi:10.5702/massspectrometry.a0169. This article has 4 citations.
(munteanu2023definingthealtered pages 1-2): Cristian V. A. Munteanu, Gabriela N. ChiriΘoiu, Andrei-Jose Petrescu, and Θtefana M. Petrescu. Defining the altered glycoproteomic space of the early secretory pathway by class i mannosidase pharmacological inhibition. Frontiers in Molecular Biosciences, Jan 2023. URL: https://doi.org/10.3389/fmolb.2022.1064868, doi:10.3389/fmolb.2022.1064868. This article has 4 citations.
(munteanu2023definingthealtered pages 2-3): Cristian V. A. Munteanu, Gabriela N. ChiriΘoiu, Andrei-Jose Petrescu, and Θtefana M. Petrescu. Defining the altered glycoproteomic space of the early secretory pathway by class i mannosidase pharmacological inhibition. Frontiers in Molecular Biosciences, Jan 2023. URL: https://doi.org/10.3389/fmolb.2022.1064868, doi:10.3389/fmolb.2022.1064868. This article has 4 citations.
(munteanu2023definingthealtered pages 7-8): Cristian V. A. Munteanu, Gabriela N. ChiriΘoiu, Andrei-Jose Petrescu, and Θtefana M. Petrescu. Defining the altered glycoproteomic space of the early secretory pathway by class i mannosidase pharmacological inhibition. Frontiers in Molecular Biosciences, Jan 2023. URL: https://doi.org/10.3389/fmolb.2022.1064868, doi:10.3389/fmolb.2022.1064868. This article has 4 citations.
(baz2024clinicalexomesequencing pages 5-6): Danya Salah Baz, Dareen Baz, Fawzah Alrwuili, Abdullah Aldowaish, Hanan E. Shamseldin, Ayman Elhomoudi, and Fowzan S. Alkuraya. Clinical exome sequencing by general pediatricians: high clinical utility and no evidence of inappropriate testing. Frontiers in Pediatrics, Apr 2024. URL: https://doi.org/10.3389/fped.2024.1392444, doi:10.3389/fped.2024.1392444. This article has 3 citations.
(baz2024clinicalexomesequencing pages 4-5): Danya Salah Baz, Dareen Baz, Fawzah Alrwuili, Abdullah Aldowaish, Hanan E. Shamseldin, Ayman Elhomoudi, and Fowzan S. Alkuraya. Clinical exome sequencing by general pediatricians: high clinical utility and no evidence of inappropriate testing. Frontiers in Pediatrics, Apr 2024. URL: https://doi.org/10.3389/fped.2024.1392444, doi:10.3389/fped.2024.1392444. This article has 3 citations.
(baz2024clinicalexomesequencing pages 1-2): Danya Salah Baz, Dareen Baz, Fawzah Alrwuili, Abdullah Aldowaish, Hanan E. Shamseldin, Ayman Elhomoudi, and Fowzan S. Alkuraya. Clinical exome sequencing by general pediatricians: high clinical utility and no evidence of inappropriate testing. Frontiers in Pediatrics, Apr 2024. URL: https://doi.org/10.3389/fped.2024.1392444, doi:10.3389/fped.2024.1392444. This article has 3 citations.
(baz2024clinicalexomesequencing pages 2-3): Danya Salah Baz, Dareen Baz, Fawzah Alrwuili, Abdullah Aldowaish, Hanan E. Shamseldin, Ayman Elhomoudi, and Fowzan S. Alkuraya. Clinical exome sequencing by general pediatricians: high clinical utility and no evidence of inappropriate testing. Frontiers in Pediatrics, Apr 2024. URL: https://doi.org/10.3389/fped.2024.1392444, doi:10.3389/fped.2024.1392444. This article has 3 citations.
(yalcintepe2023clinicalexomesequencing pages 5-8): Sinem Yalcintepe, Isik Gorker, Leyla Bozatli, Hazal Sezginer Guler, Drenushe Zhuri, Selma Demir, Emine Ikbal Atli, Engin Atli, Damla Eker, and Hakan Gurkan. Clinical exome sequencing reveals an important role for clinical diagnosis of intellectual disability with definition of seven novel variants. Neurology Asia, 28:1041-1052, Dec 2023. URL: https://doi.org/10.54029/2023rfz, doi:10.54029/2023rfz. This article has 2 citations and is from a peer-reviewed journal.
(zhang2021thecrucialrole pages 14-15): Jianjun Zhang, Jiarui Wu, Linchuan Liu, and Jianming Li. The crucial role of demannosylating asparagine-linked glycans in eradicating misfolded glycoproteins in the endoplasmic reticulum. Frontiers in Plant Science, Jan 2021. URL: https://doi.org/10.3389/fpls.2020.625033, doi:10.3389/fpls.2020.625033. This article has 30 citations.
UniProt: Q9UKM7 (MA1B1_HUMAN). HGNC:6823. EC 3.2.1.113. Glycoside hydrolase family 47 (GH47).
699 aa, type II single-pass ER membrane protein (signal-anchor).
MAN1B1 encodes the human Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
(ER alpha-1,2-mannosidase I, ERManI, ERMan1, Man9-mannosidase). It is a true, active glycosidase.
The earlier view (strict single-mannose trimming) was revised:
- PMID:12090241 (title-only cached; UniProt cites it for FUNCTION, CATALYTIC ACTIVITY, SUBSTRATE SPECIFICITY).
- At high enzyme concentration ERManI excises additional residues: "at very high concentrations it can
excise up to four alpha1,2-linked mannose residues" and "ERManI is required for trimming to
Man(5-6)GlcNAc(2) and for ERAD in cells in vivo"
PMID:18003979
PMID:18003979.
- In vitro it can generate Man6/Man5 and trims misfolded glycoproteins more extensively:
PMID:22160784
PMID:22160784.
This explains the conformational/misfolding selectivity underlying the ERAD "mannose timer".
ER proteostasis|Glycoproteostasis|N-glycosylation system|N-glycan processing|Mannose trimming ; PN-node mapping: subtype mappedβGO:1904382 (mannose trimming in glycoprotein ERAD, ok_for_propagation, more_specific_than_existing_goa); group "N-glycosylation system" mappedβGO:0006487 (protein N-linked glycosylation, entailed_by_goa_closure); type/class/branch no_mapping.entailed_by_goa_closure flag is wrong; MAN1B1 processes/trims N-glycans, it does not install them.This file is generated from the current PROTEOSTASIS phase-1 dossier and local gene-review artifacts. Edit the source review, PN mapping, or dossier rather than this generated note when correcting the underlying curation.
id: Q9UKM7
gene_symbol: MAN1B1
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: MAN1B1 (ER alpha-1,2-mannosidase I, ERManI, ERMan1) is a calcium-dependent, type II single-pass endoplasmic reticulum membrane glycosidase of glycoside hydrolase family 47 (GH47, EC 3.2.1.113) that trims terminal alpha-1,2-linked mannose residues from N-linked oligosaccharides. At low enzyme concentration it removes a single mannose from Man9GlcNAc2 to generate Man8GlcNAc2 isomer B, the first committed mannose-trimming step of N-glycan maturation; at the high local concentrations found in the ER-derived quality control compartment (ERQC) it excises additional alpha-1,2-mannoses to yield Man5-6GlcNAc2. This trimming removes misfolded glycoproteins from the calnexin/reglucosylation folding cycle and generates the demannosylated signal that commits them to ER-associated degradation (ERAD), where the trimmed glycan is recognized by downstream lectins (e.g. OS-9/XTP3-B) and delivered to the HRD1 ubiquitin-ligase machinery. ERManI thus functions as a key "mannose timer" in glycoprotein quality control. It is widely expressed, resides in the ER membrane and concentrates in mobile ER-like quality control vesicles that converge on the pericentriolar ERQC. Biallelic loss-of-function variants cause an autosomal-recessive congenital disorder of glycosylation with intellectual disability (Rafiq syndrome / MAN1B1-CDG).
existing_annotations:
- term:
id: GO:0016020
label: membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: Generic membrane localization inferred phylogenetically. MAN1B1 is a single-pass type II ER membrane protein, but the more specific endoplasmic reticulum membrane term captures the location informatively.
action: MARK_AS_OVER_ANNOTATED
reason: Bare "membrane" is uninformative relative to the specific ER membrane annotation; MAN1B1 is anchored in the ER membrane, not membranes generally.
proposed_replacement_terms:
- id: GO:0005789
label: endoplasmic reticulum membrane
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
- term:
id: GO:0005783
label: endoplasmic reticulum
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: MAN1B1 is an ER-resident enzyme; phylogenetic assignment of ER localization is consistent with experimental evidence.
action: ACCEPT
reason: Correct site of action; MAN1B1 acts in the endoplasmic reticulum on nascent and misfolded glycoproteins.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: The defining molecular function of MAN1B1; phylogenetic assignment of GH47 alpha-1,2-mannosidase activity is well supported.
action: ACCEPT
reason: Core molecular function; corroborated by direct enzymatic assays, crystal structures, EC 3.2.1.113, and CAZy GH47 membership.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
- term:
id: GO:0036503
label: ERAD pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: MAN1B1 generates the trimmed-mannose ERAD signal that commits misfolded glycoproteins to degradation; phylogenetic assignment is well supported.
action: ACCEPT
reason: Core biological process; mannose trimming by ERManI is required for ERAD of misfolded glycoproteins.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Involved in glycoprotein quality control targeting of misfolded glycoproteins for degradation
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Electronic assignment of the core GH47 alpha-1,2-mannosidase activity, consistent with experimental evidence.
action: ACCEPT
reason: Correct core molecular function; redundant with IDA/EXP evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: GH47 mannosidases require a Ca2+ ion in the active site for catalysis; MAN1B1 binds calcium as a structural/catalytic cofactor. This is a real attribute but subsidiary to the mannosidase activity, not an independent calcium-signaling function.
action: KEEP_AS_NON_CORE
reason: Accurate structural cofactor requirement of the GH47 fold but not a standalone core function; the catalytic mannosidase activity is the informative function.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Name=Ca(2+)
- reference_id: PMID:10409699
supporting_text: The mannose cleavage reaction required divalent cations as indicated by inhibition with EDTA or EGTA and reversal of the inhibition by the addition of Ca(2+)
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Electronic transfer of ER membrane localization from the UniProt subcellular location; MAN1B1 is a single-pass type II ER membrane protein.
action: ACCEPT
reason: Correct compartment; redundant with experimental IDA/EXP ER membrane annotations.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Single-pass type II membrane protein
- term:
id: GO:0005975
label: carbohydrate metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: Generic carbohydrate metabolic process from InterPro; far less informative than the specific N-glycan/mannose trimming and ERAD processes MAN1B1 participates in.
action: MARK_AS_OVER_ANNOTATED
reason: Over-general; the specific ER mannose trimming (GO:1904380) and ER N-glycan trimming (GO:0140277) terms better capture the biology.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
- term:
id: GO:0009100
label: glycoprotein metabolic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: Generic glycoprotein metabolic process from ARBA; correct in essence but far less informative than the specific N-glycan trimming and ERAD annotations.
action: MARK_AS_OVER_ANNOTATED
reason: Over-general parent process; the specific glycan-trimming/ERAD terms are preferred.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Involved in glycoprotein quality control targeting of misfolded glycoproteins for degradation
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: located_in
review:
summary: Generic membrane localization from InterPro, superseded by the specific ER membrane annotation.
action: MARK_AS_OVER_ANNOTATED
reason: Uninformative parent; MAN1B1 is specifically an ER membrane protein.
proposed_replacement_terms:
- id: GO:0005789
label: endoplasmic reticulum membrane
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
- term:
id: GO:0036503
label: ERAD pathway
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: Electronic (ARBA) assignment of the ERAD pathway, consistent with experimental evidence that ERManI mannose trimming is required for ERAD.
action: ACCEPT
reason: Correct core biological process; redundant with IMP/IDA evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4793949
qualifier: enables
review:
summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901024
qualifier: enables
review:
summary: Reactome curation of MAN1B1 hydrolysis of a 1,2-linked mannose (a branch).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901036
qualifier: enables
review:
summary: Reactome curation of MAN1B1 hydrolysis of a second 1,2-linked mannose (a branch).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901039
qualifier: enables
review:
summary: Reactome curation of MAN1B1 hydrolysis of a 1,2-linked mannose (c branch).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901074
qualifier: enables
review:
summary: Reactome curation of MAN1B1/EDEM2 hydrolysis of a 1,2-linked mannose (b branch).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9036008
qualifier: enables
review:
summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9036011
qualifier: enables
review:
summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9036012
qualifier: enables
review:
summary: Reactome curation of MAN1B1 mannosidase activity (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct core molecular function; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9696807
qualifier: enables
review:
summary: Reactome curation of MAN1B1 mannosidase activity in the context of N-glycan mannose trimming of viral (SARS-CoV-2) spike.
action: ACCEPT
reason: Correct core molecular function acting on a viral glycoprotein substrate; redundant with experimental evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0140277
label: endoplasmic reticulum N-glycan trimming
evidence_type: IMP
original_reference_id: PMID:18003979
qualifier: involved_in
review:
summary: Knockdown/inhibition of ERManI blocks N-glycan trimming in the ER, directly demonstrating its role in ER N-glycan trimming.
action: ACCEPT
reason: Core biological process with direct experimental (IMP) support.
supported_by:
- reference_id: PMID:18003979
supporting_text: required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
- term:
id: GO:0036503
label: ERAD pathway
evidence_type: IDA
original_reference_id: PMID:10521544
qualifier: involved_in
review:
summary: MAN1B1 generates the trimmed Man8B glycan that initiates the ERAD-targeting signal during N-glycan maturation.
action: ACCEPT
reason: Core biological process; ERManI mannose trimming commits misfolded glycoproteins to ERAD.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Involved in glycoprotein quality control targeting of misfolded glycoproteins for degradation
- term:
id: GO:1904380
label: endoplasmic reticulum mannose trimming
evidence_type: IDA
original_reference_id: PMID:10521544
qualifier: involved_in
review:
summary: The recombinant enzyme directly removes a single alpha-1,2-mannose from Man9GlcNAc to produce Man8GlcNAc isomer B, the first ER mannose-trimming step.
action: ACCEPT
reason: Core biological process with direct enzymatic (IDA) demonstration of ER mannose trimming.
supported_by:
- reference_id: PMID:10409699
supporting_text: the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis
- term:
id: GO:1904380
label: endoplasmic reticulum mannose trimming
evidence_type: IMP
original_reference_id: PMID:18003979
qualifier: involved_in
review:
summary: ERManI knockdown impairs ER mannose trimming to Man5-6GlcNAc2 in cells, confirming its role in ER mannose trimming.
action: ACCEPT
reason: Core biological process with direct experimental (IMP) support.
supported_by:
- reference_id: PMID:18003979
supporting_text: required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: IDA
original_reference_id: PMID:18003979
qualifier: located_in
review:
summary: ERManI is localized to the ER membrane and concentrates in the ER-derived quality control compartment.
action: ACCEPT
reason: Correct compartment with direct experimental support.
supported_by:
- reference_id: PMID:18003979
supporting_text: ERManI is strikingly concentrated together with the ERAD substrate in the pericentriolar ER-derived quality control compartment
- term:
id: GO:1904380
label: endoplasmic reticulum mannose trimming
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901032
qualifier: involved_in
review:
summary: Reactome curation of ER mannose trimming in the ER Quality Control Compartment pathway.
action: ACCEPT
reason: Correct core biological process; redundant with experimental evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: EXP
original_reference_id: PMID:15713668
qualifier: enables
review:
summary: Structural and kinetic study of the GH47 catalytic mechanism with active-site mutagenesis directly demonstrating the alpha-1,2-mannosidase activity.
action: ACCEPT
reason: Core molecular function with direct experimental (EXP) and structural support.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0005789
label: endoplasmic reticulum membrane
evidence_type: EXP
original_reference_id: PMID:10409699
qualifier: located_in
review:
summary: Epitope-tagged ERManI displays an ER pattern of localization in cells, supporting ER membrane localization.
action: ACCEPT
reason: Correct compartment with experimental support.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: IMP
original_reference_id: PMID:18003979
qualifier: enables
review:
summary: Functional knockdown/inhibition experiments tie loss of mannosidase activity to impaired N-glycan trimming, supporting the enables annotation.
action: ACCEPT
reason: Core molecular function consistent with direct enzymatic assays.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0036503
label: ERAD pathway
evidence_type: IMP
original_reference_id: PMID:18003979
qualifier: involved_in
review:
summary: ERManI is required for ERAD of a model misfolded glycoprotein in cells; loss leads to accumulation of untrimmed glycans.
action: ACCEPT
reason: Core biological process with direct experimental (IMP) support.
supported_by:
- reference_id: PMID:18003979
supporting_text: required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
- term:
id: GO:0036503
label: ERAD pathway
evidence_type: IMP
original_reference_id: PMID:21062743
qualifier: involved_in
review:
summary: Mannose trimming by ERManI is required for handoff of a substrate glycoprotein from EDEM1 to the late ERAD lectin XTP3-B and the downstream HRD1/SCF(Fbs2) ligases.
action: ACCEPT
reason: Core biological process; experimentally links ERManI trimming to downstream ERAD steps.
supported_by:
- reference_id: PMID:21062743
supporting_text: Mannose trimming is required for delivery of a glycoprotein from EDEM1 to XTP3-B
- term:
id: GO:0019082
label: viral protein processing
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9694548
qualifier: involved_in
review:
summary: Reactome annotation of MAN1B1 in N-glycan mannose trimming of the SARS-CoV-2 spike glycoprotein. This is the generic mannosidase activity acting on a viral glycoprotein substrate, not a distinct viral function.
action: KEEP_AS_NON_CORE
reason: Real but peripheral; reflects the core mannosidase activity applied to a viral substrate rather than a dedicated viral-processing role.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: EC=3.2.1.113
- term:
id: GO:0036510
label: trimming of terminal mannose on C branch
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901039
qualifier: involved_in
review:
summary: Reactome curation of the specific sub-step in which ERManI trims the terminal C-branch mannose; an accurate refinement of its trimming activity.
action: ACCEPT
reason: Correct specific sub-process of N-glycan mannose trimming.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
- term:
id: GO:0031410
label: cytoplasmic vesicle
evidence_type: IDA
original_reference_id: PMID:25411339
qualifier: located_in
review:
summary: At steady state ERManI resides in mobile ER-like quality control vesicles (QCVs) to which ERAD substrates are delivered, supporting a cytoplasmic vesicle localization.
action: ACCEPT
reason: Genuine localization with direct experimental support (QCVs).
supported_by:
- reference_id: PMID:25411339
supporting_text: quality control vesicles (QCVs) with ER-like density, to which ERAD substrates are delivered
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: IDA
original_reference_id: PMID:10521544
qualifier: enables
review:
summary: The recombinant human enzyme directly removes a single alpha-1,2-mannose from Man9GlcNAc to give Man8GlcNAc isomer B, directly demonstrating its mannosidase activity.
action: ACCEPT
reason: Core molecular function with direct enzymatic (IDA) support.
supported_by:
- reference_id: PMID:10409699
supporting_text: the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: IDA
original_reference_id: PMID:18003979
qualifier: located_in
review:
summary: ERManI is strikingly concentrated with ERAD substrate in the pericentriolar ER-derived quality control compartment (ERQC), where its high local concentration enables extensive trimming.
action: ACCEPT
reason: Genuine, functionally important localization with direct experimental support.
supported_by:
- reference_id: PMID:18003979
supporting_text: ERManI is strikingly concentrated together with the ERAD substrate in the pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: PMID:21062743
qualifier: located_in
review:
summary: ERQC localization asserted in the context of ERManI-dependent ERAD substrate delivery.
action: ACCEPT
reason: Consistent with direct IDA evidence for ERQC localization.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: IDA
original_reference_id: PMID:22160784
qualifier: enables
review:
summary: In vitro assays show recombinant hERManI generates Man6GlcNAc2 and Man5GlcNAc2 and preferentially trims misfolded glycoproteins, directly demonstrating its mannosidase activity and conformational selectivity.
action: ACCEPT
reason: Core molecular function with direct in vitro enzymatic (IDA) support.
supported_by:
- reference_id: PMID:22160784
supporting_text: generated Man(6)GlcNAc(2)-PA and Man(5)GlcNAc(2)-PA from 100 ΞΌM
- term:
id: GO:0005783
label: endoplasmic reticulum
evidence_type: TAS
original_reference_id: PMID:22160784
qualifier: located_in
review:
summary: ER localization asserted in an in vitro mannose-trimming study; consistent with the established ER residence of ERManI.
action: ACCEPT
reason: Correct compartment; redundant with experimental ER membrane annotations.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
- term:
id: GO:0005794
label: Golgi apparatus
evidence_type: TAS
original_reference_id: PMID:22160784
qualifier: located_in
review:
summary: A Golgi localization has been reported for ERManI, but later work attributes the apparent Golgi pattern to membrane disturbance during immunofluorescence; ERManI functions in the ER/ERQC, not the Golgi.
action: KEEP_AS_NON_CORE
reason: Disputed/likely fixation artifact; not a genuine site of action. Retained as non-core rather than removed because a TAS source asserts it.
supported_by:
- reference_id: PMID:25411339
supporting_text: Golgi pattern
- term:
id: GO:1903561
label: extracellular vesicle
evidence_type: HDA
original_reference_id: PMID:24769233
qualifier: located_in
review:
summary: High-throughput proteomic detection of MAN1B1 in cerebrospinal fluid extracellular vesicles; a real but peripheral detection unrelated to its ER catalytic function.
action: KEEP_AS_NON_CORE
reason: Large-scale proteomics detection; not a functional site of action.
supported_by:
- reference_id: PMID:24769233
supporting_text: cerebrospinal fluid
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-4793949
qualifier: located_in
review:
summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9036008
qualifier: located_in
review:
summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9036011
qualifier: located_in
review:
summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9036012
qualifier: located_in
review:
summary: Reactome curation of ERQC localization (defective-MAN1B1 reaction context).
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0016020
label: membrane
evidence_type: HDA
original_reference_id: PMID:19946888
qualifier: located_in
review:
summary: High-throughput membrane proteome detection of MAN1B1; consistent with its membrane anchoring but uninformative relative to the specific ER membrane term.
action: MARK_AS_OVER_ANNOTATED
reason: Generic membrane term from proteomics; MAN1B1 is specifically an ER membrane protein.
proposed_replacement_terms:
- id: GO:0005789
label: endoplasmic reticulum membrane
supported_by:
- reference_id: PMID:19946888
supporting_text: membrane proteome
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901024
qualifier: located_in
review:
summary: Reactome curation of ERQC localization.
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901036
qualifier: located_in
review:
summary: Reactome curation of ERQC localization.
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901039
qualifier: located_in
review:
summary: Reactome curation of ERQC localization.
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-901074
qualifier: located_in
review:
summary: Reactome curation of ERQC localization.
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0044322
label: endoplasmic reticulum quality control compartment
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9696807
qualifier: located_in
review:
summary: Reactome curation of ERQC localization in the spike N-glycan trimming pathway.
action: ACCEPT
reason: Correct compartment; redundant with IDA ERQC evidence.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: IDA
original_reference_id: PMID:12090241
qualifier: enables
review:
summary: Demonstrates that the human class I ER alpha-1,2-mannosidase can trim beyond a single mannose, refining the specificity of the mannosidase activity.
action: ACCEPT
reason: Core molecular function with direct experimental support; informs the broader-than-single-residue specificity underlying the mannose timer.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: at high enzyme concentrations, as found in the ER
- term:
id: GO:0005783
label: endoplasmic reticulum
evidence_type: IDA
original_reference_id: PMID:18003979
qualifier: located_in
review:
summary: Direct evidence for ER localization of ERManI.
action: ACCEPT
reason: Correct site of action with direct experimental support.
supported_by:
- reference_id: PMID:18003979
supporting_text: pericentriolar ER-derived quality control compartment
- term:
id: GO:0016020
label: membrane
evidence_type: IDA
original_reference_id: PMID:18003979
qualifier: located_in
review:
summary: Generic membrane localization; superseded by the specific ER membrane annotation from the same evidence.
action: MARK_AS_OVER_ANNOTATED
reason: Uninformative parent of the specific ER membrane localization.
proposed_replacement_terms:
- id: GO:0005789
label: endoplasmic reticulum membrane
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: PMID:10409699
qualifier: enables
review:
summary: Identification and characterization of human ER mannosidase I as the enzyme catalyzing the first mannose-trimming step.
action: ACCEPT
reason: Core molecular function with strong experimental basis.
supported_by:
- reference_id: PMID:10409699
supporting_text: the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis
- term:
id: GO:0005783
label: endoplasmic reticulum
evidence_type: TAS
original_reference_id: PMID:10409699
qualifier: located_in
review:
summary: ER localization asserted from the original characterization of ER mannosidase I.
action: ACCEPT
reason: Correct site of action; consistent with experimental ER membrane evidence.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
- term:
id: GO:0009311
label: oligosaccharide metabolic process
evidence_type: TAS
original_reference_id: PMID:10409699
qualifier: involved_in
review:
summary: Generic oligosaccharide metabolic process; correct but far less informative than the specific N-glycan/mannose trimming terms.
action: MARK_AS_OVER_ANNOTATED
reason: Over-general parent process; the specific ER mannose trimming term is preferred.
supported_by:
- reference_id: PMID:10409699
supporting_text: Asn-linked oligosaccharide biosynthesis
- term:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
evidence_type: TAS
original_reference_id: PMID:10521544
qualifier: enables
review:
summary: Original cloning/characterization establishing the specific human alpha-1,2-mannosidase activity producing Man8GlcNAc2 isomer B.
action: ACCEPT
reason: Core molecular function with strong experimental basis.
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: TAS
original_reference_id: PMID:10521544
qualifier: enables
review:
summary: Calcium is required for ERManI activity; this is a structural/catalytic cofactor requirement of the GH47 fold rather than an independent calcium-signaling function.
action: KEEP_AS_NON_CORE
reason: Real cofactor requirement but subsidiary to the catalytic mannosidase activity.
supported_by:
- reference_id: PMID:10521544
supporting_text: Calcium is required for enzyme activity
- term:
id: GO:0016020
label: membrane
evidence_type: TAS
original_reference_id: PMID:10521544
qualifier: located_in
review:
summary: Generic membrane localization; superseded by the specific ER membrane annotation.
action: MARK_AS_OVER_ANNOTATED
reason: Uninformative parent; MAN1B1 is specifically an ER membrane protein.
proposed_replacement_terms:
- id: GO:0005789
label: endoplasmic reticulum membrane
supported_by:
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: 'SUBCELLULAR LOCATION: Endoplasmic reticulum membrane'
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10409699
title: Identification, expression, and characterization of a cDNA encoding human endoplasmic reticulum mannosidase I, the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis.
findings:
- statement: Human ER mannosidase I is the enzyme catalyzing the first mannose-trimming step of Asn-linked oligosaccharide biosynthesis; the reaction requires divalent cations (Ca2+).
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Foundational characterization of human ERManI; supports the mannosidase activity, ER localization, and calcium dependence.
- id: PMID:10521544
title: Cloning and expression of a specific human alpha 1,2-mannosidase that trims Man9GlcNAc2 to Man8GlcNAc2 isomer B during N-glycan biosynthesis.
findings:
- statement: The recombinant human enzyme removes a single alpha-1,2-mannose from Man9GlcNAc to produce Man8GlcNAc isomer B; calcium is required and dMNJ and kifunensine inhibit activity.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Defines the specific product (Man8B) and the calcium/inhibitor profile of MAN1B1.
- id: PMID:12090241
title: The specificity of the yeast and human class I ER alpha 1,2-mannosidases involved in ER quality control is not as strict previously reported.
findings:
- statement: The human class I ER alpha-1,2-mannosidase can trim more than a single mannose, revising the strict single-residue specificity model.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Establishes the broader (concentration-dependent) trimming specificity underlying the mannose timer.
- id: PMID:15713668
title: Mechanism of class 1 (glycosylhydrolase family 47) alpha-mannosidases involved in N-glycan processing and endoplasmic reticulum quality control.
findings:
- statement: Structural and mutagenesis study of the GH47 inverting hydrolytic mechanism, mapping catalytic residues of human ERManI.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Mechanistic/structural basis of the GH47 mannosidase catalysis.
- id: PMID:18003979
title: Endoplasmic reticulum (ER) mannosidase I is compartmentalized and required for N-glycan trimming to Man5-6GlcNAc2 in glycoprotein ER-associated degradation.
findings:
- statement: ERManI is concentrated in the pericentriolar ER quality control compartment and is required for trimming to Man5-6GlcNAc2 and for ERAD in cells.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Key in vivo evidence for ERQC localization and the ERAD/mannose-trimming requirement.
- id: PMID:19946888
title: Defining the membrane proteome of NK cells.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput membrane proteome; source of the generic membrane HDA annotation, peripheral to function.
- id: PMID:21062743
title: Mannose trimming is required for delivery of a glycoprotein from EDEM1 to XTP3-B and to late endoplasmic reticulum-associated degradation steps.
findings:
- statement: ERManI-dependent mannose trimming is required to hand off substrate from EDEM1 to the late ERAD lectin XTP3-B and downstream HRD1/SCF(Fbs2) ligases.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Links ERManI trimming to specific downstream ERAD machinery.
- id: PMID:22160784
title: In vitro mannose trimming property of human ER alpha-1,2 mannosidase I.
findings:
- statement: Recombinant hERManI generates Man6GlcNAc2 and Man5GlcNAc2 in vitro and preferentially removes mannoses from misfolded glycoproteins, indicating conformational selectivity.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Demonstrates extended trimming and misfolding selectivity in vitro.
- id: PMID:24769233
title: 'Proteomic analysis of cerebrospinal fluid extracellular vesicles: a comprehensive dataset.'
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: High-throughput CSF extracellular vesicle proteomics; source of the extracellular vesicle HDA annotation, peripheral to function.
- id: PMID:32958677
title: The cytoplasmic tail of human mannosidase Man1b1 contributes to catalysis-independent quality control of misfolded alpha1-antitrypsin.
findings:
- statement: Beyond its luminal catalytic alpha-1,2-mannosidase activity, MAN1B1/ERManI contributes to ERAD of misfolded glycoproteins (NHK and Z variants of alpha1-antitrypsin) through an unconventional, catalysis-independent pathway controlled by its evolutionarily extended N-terminal cytoplasmic tail; this tail-dependent degradation does not require the substrate's N-glycans and drives proteasomal degradation.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: PubMed-verified (PMID:32958677, DOI 10.1073/pnas.1919013117). Establishes a second, catalysis-independent quality-control function of MAN1B1 mediated by its N-terminal cytoplasmic tail, distinct from the luminal mannose-trimming activity. Not cached; supporting_text not added to supported_by. Identified via Falcon deep research.
- id: PMID:25411339
title: Mammalian ER mannosidase I resides in quality control vesicles, where it encounters its glycoprotein substrates.
findings:
- statement: ERManI resides at steady state in mobile ER-like quality control vesicles (QCVs) that deliver ERAD substrates and converge on the ERQC; the apparent Golgi pattern is a fixation artifact.
reference_section_type: ABSTRACT
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Supports cytoplasmic vesicle (QCV) localization and argues the Golgi localization is artifactual.
- id: Reactome:R-HSA-4793949
title: Defective MAN1B1 does not hydrolyse 1,2-linked mannose (a branch)
findings: []
- id: Reactome:R-HSA-901024
title: MAN1B1 hydrolyses 1,2-linked mannose (a branch)
findings: []
- id: Reactome:R-HSA-901032
title: ER Quality Control Compartment (ERQC)
findings: []
- id: Reactome:R-HSA-901036
title: MAN1B1 hydrolyses a second 1,2-linked mannose (a branch)
findings: []
- id: Reactome:R-HSA-901039
title: MAN1B1 hydrolyses 1,2-linked mannose (c branch)
findings: []
- id: Reactome:R-HSA-901074
title: MAN1B1,EDEM2 hydrolyse 1,2-linked mannose (b branch)
findings: []
- id: Reactome:R-HSA-9036008
title: Defective MAN1B1 does not hydrolyse a second 1,2-linked mannose (a branch)
findings: []
- id: Reactome:R-HSA-9036011
title: Defective MAN1B1 does not hydrolyse 1,2-linked mannose (b branch)
findings: []
- id: Reactome:R-HSA-9036012
title: Defective MAN1B1 does not hydrolyse 1,2-linked mannose (c branch)
findings: []
- id: Reactome:R-HSA-9694548
title: Maturation of spike protein
findings: []
- id: Reactome:R-HSA-9696807
title: N-glycan mannose trimming of Spike
findings: []
- id: file:human/MAN1B1/MAN1B1-uniprot.txt
title: UniProt entry Q9UKM7 (MA1B1_HUMAN), Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
findings:
- statement: Calcium-dependent GH47 alpha-1,2-mannosidase (EC 3.2.1.113) of the ER membrane (type II single-pass) that trims Man9GlcNAc2 to Man8GlcNAc2 isomer B and, at high concentration, to Man5-6GlcNAc2, targeting misfolded glycoproteins for ERAD; biallelic variants cause Rafiq syndrome/MAN1B1-CDG.
reference_section_type: OTHER
core_functions:
- description: Endoplasmic reticulum membrane-anchored alpha-1,2-mannosidase that hydrolyzes terminal alpha-1,2-linked mannose residues from N-linked oligosaccharides, generating Man8GlcNAc2 isomer B and, at high local concentration, Man5-6GlcNAc2.
molecular_function:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
locations:
- id: GO:0005789
label: endoplasmic reticulum membrane
supported_by:
- reference_id: PMID:10409699
supporting_text: the enzyme that catalyzes the first mannose trimming step in mammalian Asn-linked oligosaccharide biosynthesis
- reference_id: file:human/MAN1B1/MAN1B1-uniprot.txt
supporting_text: Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase
- description: Quality-control "mannose timer" that, by trimming N-glycans on misfolded glycoproteins in the ER/ERQC, removes them from the calnexin folding cycle and generates the demannosylated signal that commits them to ER-associated degradation.
molecular_function:
id: GO:0004571
label: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
locations:
- id: GO:0044322
label: endoplasmic reticulum quality control compartment
supported_by:
- reference_id: PMID:18003979
supporting_text: required for trimming to Man 5β6 GlcNAc 2 and for ERAD in cells in vivo
- reference_id: PMID:21062743
supporting_text: Mannose trimming is required for delivery of a glycoprotein from EDEM1 to XTP3-B
directly_involved_in:
- id: GO:0036503
label: ERAD pathway
- id: GO:1904380
label: endoplasmic reticulum mannose trimming
proposed_new_terms: []
suggested_questions:
- question: What determines the conformational selectivity by which ERManI preferentially trims mannoses from misfolded versus correctly folded glycoproteins, and is this intrinsic to the enzyme or dependent on ERQC cofactors?
- question: How is the high local concentration of ERManI in quality control vesicles/ERQC regulated to tune the kinetics of the mannose timer?
suggested_experiments:
- description: Reconstitute ERManI trimming on defined folded versus misfolded glycoprotein substrates at controlled enzyme concentrations to quantify how local concentration and substrate conformation set the rate of progression from Man9 to Man5-6.
- description: Live-cell imaging of QCV/ERQC dynamics in cells expressing wild-type versus Rafiq-syndrome (R334C, E397K) MAN1B1 variants to test how disease mutations affect localization, vesicle trafficking, and ERAD substrate clearance.