Function
Locations
The single apoB-100 per LDL particle is the LDLR ligand; receptor-binding-region variants (e.g. R3527Q) cause familial defective apoB-100.
Low-density lipoprotein (LDL) carries most plasma cholesterol and is cleared mainly by hepatocyte LDL receptors. Each LDL particle contains one apolipoprotein B-100 molecule, whose receptor-binding region is the ligand for the cysteine-rich ligand-binding repeats of the LDL receptor (LDLR) at the cell surface. LDLR-LDL complexes cluster in clathrin-coated pits through the LDLR cytoplasmic NPxY motif (with the adaptor LDLRAP1/ARH in liver) and are internalized by receptor-mediated endocytosis. In the acidic early endosome the receptor releases LDL, which proceeds to lysosomes where cholesteryl esters are hydrolysed and free cholesterol is delivered to the cell; the empty receptor recycles to the plasma membrane for further rounds. Secreted PCSK9 binds the LDLR EGF-A repeat and, after co-internalization, prevents the receptor's acid-induced conformational change so that it is routed to lysosomes and degraded instead of recycling, lowering receptor number and LDL clearance (IDOL/MYLIP provides an intracellular, ubiquitin-dependent degradation route). Loss of LDLR, of the apoB-100 receptor-binding region, or of LDLRAP1, or gain of function of PCSK9, causes familial hypercholesterolaemia; PCSK9 loss of function lowers LDL cholesterol and is the target of PCSK9-inhibitor therapy.
All recommended fields populated.
✗ none found
No MODULE:ldl_receptor_mediated_endocytosis deep-research report alongside the module YAML.
✓ every leaf node grounds to a representative protein.
✓ every declared conforms_to bundle matches its template motif.
4 gene-function check(s) reflected in core functions · 0 conflict(s) · 4 evidence or coverage gap(s) (8 comparison(s))
Retained noncore functions are reported separately; they do not require promotion to core functions. Support from representative genes does not establish conservation across the whole family. Missing reviews or identifiers leave a claim unverified.
| Annoton | Participant | Function | Assessment |
|---|---|---|---|
| apob_ldlr_binding | APOB (human) UniProtKB:P04114 Family Representative |
low-density lipoprotein particle receptor binding GO:0050750 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| ldlr_receptor | LDLR (human) UniProtKB:P01130 Family Representative |
low-density lipoprotein particle receptor activity GO:0005041 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| pcsk9_ldlr_binding | PCSK9 (human) UniProtKB:Q8NBP7 Family Representative |
low-density lipoprotein particle receptor binding GO:0050750 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| lipa_sterol_esterase | LIPA (human) UniProtKB:P38571 Family Representative |
sterol ester esterase activity GO:0004771 |
Core Supported
The GO molecular function is reflected in core_functions (exact term or a reviewed subclass). |
| apob_ldlr_binding | Apolipoprotein B-100 PANTHER:PTHR13769:SF1 Family |
low-density lipoprotein particle receptor binding GO:0050750 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR13769:SF1. |
| ldlr_receptor | Low-density lipoprotein receptor PANTHER:PTHR22722:SF15 Family |
low-density lipoprotein particle receptor activity GO:0005041 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR22722:SF15. |
| pcsk9_ldlr_binding | Proprotein convertase subtilisin/kexin type 9 PANTHER:PTHR43806:SF60 Family |
low-density lipoprotein particle receptor binding GO:0050750 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR43806:SF60. |
| lipa_sterol_esterase | Lysosomal acid lipase/cholesteryl ester hydrolase PANTHER:PTHR11005:SF26 Family |
sterol ester esterase activity GO:0004771 |
Family Review Missing
No supported structured family review is available for PANTHER:PTHR11005:SF26. |
✓ every negative regulator described as feedback has an upstream edge closing the loop.
1 complete review(s) · 2 with deep research · 0 missing review · 2 reviewed but lacking deep research
| Gene | Review | Complete | Deep research |
|---|---|---|---|
| APOB P04114 | ✓ | 126/158 | ✗ |
| LDLR P01130 | ✓ | 180/181 | ✓ |
| LIPA P38571 | ✓ | ✓ | ✗ |
| PCSK9 Q8NBP7 | ✓ | 103/105 | ✓ |
Grounded to the completed human reviews of APOB (UniProtKB:P04114), LDLR (P01130) and PCSK9 (Q8NBP7); GO terms are taken from their core_functions. PANTHER subfamily ids are those in each representative's UniProt cross-references, with labels copied from interpro/panther/panther.obo (the PTHR22722:SF15 official name is "LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED"). Reactome reaction ids/titles were checked against the local reactome cache. Members not modelled as parts because no AIGR gene review exists yet: LDLRAP1 (ARH clathrin adaptor required for hepatic LDLR internalization; loss causes autosomal recessive hypercholesterolaemia) and MYLIP (IDOL, LXR-induced E3 ligase that ubiquitinates LDLR for degradation). Part 4 adds the first downstream lysosomal step, cholesteryl-ester hydrolysis by LIPA (completed human LIPA review, P38571; PANTHER PTHR11005:SF26 from the PANTHER human classification), as in Reactome R-HSA-8865667. NPC2/NPC1 export of the released cholesterol from lysosomes is not modelled because neither has a gene review; SREBP2-dependent transcriptional control of LDLR and PCSK9 is upstream regulation, not modelled. ApoE-mediated remnant uptake by LDLR is noted in the LDLR review but kept out of this LDL-specific module.
The single apoB-100 per LDL particle is the LDLR ligand; receptor-binding-region variants (e.g. R3527Q) cause familial defective apoB-100.
Ligand-binding repeats capture LDL; the NPxY cytoplasmic motif engages clathrin adaptors (LDLRAP1 in hepatocytes); acid-dependent ligand release in endosomes allows receptor recycling. Loss of function = familial hypercholesterolaemia.
Acts as a non-catalytic chaperone for LDLR degradation (its protease activity is needed only for autoprocessing). Gain of function = familial hypercholesterolaemia; loss of function = low LDL cholesterol; therapeutic target.
Acid-pH hydrolase that releases free cholesterol (and fatty acid) from the cholesteryl esters of LDL delivered to lysosomes, the step that makes LDL cholesterol available to the cell; it also hydrolyses LDL triacylglycerol. Complete loss = Wolman disease; residual activity = cholesteryl ester storage disease. Export of the released cholesterol by NPC2/NPC1 is downstream and not modelled (no gene reviews).