ESR-ECOLI-DET-Mini Recap Results
Archived result bundle from PR #1535:
- PR: https://github.com/ai4curation/ai-gene-review/pull/1535
- PR title:
DO NOT MERGE Independent reviews of 7 E. coli genes + DeepECTF prediction assessments (claude-expt-1) - Source head commit:
9ce787b0daddbf03d6bc1b5164682f7e0000e7cd - Dataset ID:
10.5281/zenodo.20751016 - Benchmark ID:
ESR-ECOLI-DET-Mini(alias:ESR-ECOLI-DET-7)
These files are preserved here as project experiment outputs only. They should not be treated as production updates to genes/ECOLI/.
Contents
genes/ECOLI/DET-PREDICTION-REVIEW-SUMMARY.md— original experiment summary.genes/ECOLI/<gene>/<gene>-det-predictions-review.yaml— DeepECTF prediction review outputs.genes/ECOLI/<gene>/<gene>-ai-review.yaml— independently recreated gene reviews from the experiment.genes/ECOLI/yciO/yciO-bioinformatics/— YciO/TsaC alignment artifacts used by the experiment.publications/PMID_*.md— supporting publication caches added by the experiment branch.
ESR-ECOLI-DET-Mini Verdicts
| Gene | DeepECTF prediction | Experiment verdict | Error type |
|---|---|---|---|
| fepE | EC:2.7.13.3 histidine kinase | REP | FREQUENCY_BIAS |
| yciO | EC:2.7.7.87 TC-AMP synthase | PLI | PARALOG_OVERANNOTATION |
| yegV | EC:2.7.1.92 5-dehydro-2-deoxygluconokinase | UNC | |
| ygfF | EC:1.1.1.47 glucose 1-dehydrogenase | UNC | |
| yjdM | EC:3.11.1.2 phosphonoacetate hydrolase | NPI | IN_VITRO_NOT_IN_VIVO |
| yjhQ | EC:2.3.1.189 mycothiol synthase | NPI | PATHWAY_CONTEXT_IGNORED |
| yrhB | EC:4.1.2.50 6-carboxytetrahydropterin synthase | NPI | PATHWAY_CONTEXT_IGNORED |
Relative to the published de Crécy-Lagard expert labels, this experiment is an exact class match for fepE, yciO, yjhQ, and yrhB, and differs for yegV, ygfF, and yjdM. It is therefore a 4/7 exact-label Expert Synthetic Review recap, not a 7/7 replication.