AI Gene Review Projects

Curated gene annotation review projects organized by topic and organism

See the complete auto-generated list of all projects →

C. elegans Projects

Ciliopathy Pathway diagram
Mitophagy Pathway diagram
Proteostasis Pathway diagram
P Granules
Surveillance Immunity Pathway diagram
UPR Stress Pathway diagram

Yeast Projects

Cell Cycle
DNA Repair & Chromatin
Epigenetics & Histone Inheritance
Metabolic Engineering
Replicative Aging

Human / Mammalian Projects

Allergens
Alzheimer Disease
Glycobiology Resources dossier
PAINT (No-IBA Genes)
Ferroptosis
Isoform-Specific Functions
PINK1-Parkin Mitophagy
Human Proteostasis Network
Neuron Development
Neuroblast Proliferation (vertebrate vs protostome disambiguation)
cGAS-STING Pathway
Extracellular Matrix
Evidence-Source Sufficiency
Mechanobiology
ER-Phagy
Integrated Stress Response
MicroRNA Degradation / TDMD
NLRP3 Inflammasome
Ribosome Quality Control
Stress Granules
Unfolded Protein Binding (GO:0051082 obsoletion)
ER-PM Tethering (GO:0061817 obsoletion)
Mitochondrion-ER Tethering (GO:1990456 obsoletion)
Mitochondrion Targeting Sequence Binding (GO:0030943 obsoletion)
Synaptic Vesicle Docking (GO:0099148 obsoletion)
Vesicle Targeting (GO:0006903 obsoletion)
Protein Localization to ER Exit Site (GO:0070973 obsoletion)
Calcitriol Biosynthesis from Calciol (GO:0036378 obsoletion)
Succinate Dehydrogenase gp2term (GO:0008177 enables→contributes_to)

Bacterial Projects

Antimicrobial Resistance (CARD/ARO)
B. subtilis
Cellulosome
Biosynthetic Gene Cluster Complexes
Nitrogen Cycle

Plant Projects

A. thaliana Heat Stress
Nicotine Biosynthesis
Ent-Kaurene Oxidation (GO:0010241 obsoletion)

Other Organism Projects

Cephalopod Neuro Genes
Tardigrade Stress Response
Satellite Model Organisms
Parasites

Cross-Cutting & Methodology

COSCIENTIST (AI co-scientist compute-driven hypotheses)
Pathway Satisfiability (context-resolved module logic)
Ad-Hoc Bioinformatics
Anti-CRISPR Systems
Contested Function (Pseudo-enzymes)
UniProt CAUTION Notes
Enzyme Specificity
Function Knowledge Gaps
IBA Annotation Review
InterPro Mapping Review
Iron-Sulfur Cluster Biogenesis
Metabolic Model Analysis
Metabolomics Interpretation with GO / GO-CAM Tools landscape
METEA MLL Cluster
NITV2 Pathways
Over-Annotation Patterns
Behaviour Annotations (Over-Annotation)
Review Quality Audit (Boilerplate)
Pseudoenzymes
Phosphorylation Refactor
Protein Complex Functions
RHEA → GO Contribution & Gaps
Pfam → GO Precision Gaps Results
NCBIFAM / CDD → GO Contribution & Gaps
Swiss-Prot Keywords
UniPathway Unique Terms
Surveillance Immunity Curation
BioReason-Pro Comparison
ProtNLM2 Evaluation
Validating E. coli ML Predictions
Cuproptosis (Copper-Dependent Cell Death)
TreeGrafter Inference Evaluation