AI Gene Review Projects

Curated gene annotation review projects organized by topic and organism

C. elegans Projects

Ciliopathy Pathway diagram
Mitophagy Pathway diagram
Proteostasis Pathway diagram
P Granules
Surveillance Immunity Pathway diagram
UPR Stress Pathway diagram

Yeast Projects

Cell Cycle
DNA Repair & Chromatin
Epigenetics & Histone Inheritance
Metabolic Engineering
Replicative Aging

Human / Mammalian Projects

PAINT (No-IBA Genes)
Ferroptosis
Isoform-Specific Functions
PINK1-Parkin Mitophagy
Human Proteostasis Network
Neuron Development
cGAS-STING Pathway
Extracellular Matrix
Mechanobiology
ER-Phagy
Integrated Stress Response
MicroRNA Degradation / TDMD
NLRP3 Inflammasome
Ribosome Quality Control
Stress Granules
Unfolded Protein Binding (GO:0051082 obsoletion)
ER-PM Tethering (GO:0061817 obsoletion)
Mitochondrion-ER Tethering (GO:1990456 obsoletion)
Synaptic Vesicle Docking (GO:0099148 obsoletion)

Bacterial Projects

B. subtilis
Cellulosome

Plant Projects

A. thaliana Heat Stress
Nicotine Biosynthesis

Other Organism Projects

Cephalopod Neuro Genes
Tardigrade Stress Response

Cross-Cutting & Methodology

Ad-Hoc Bioinformatics
Anti-CRISPR Systems
Contested Function (Pseudo-enzymes)
Enzyme Specificity
IBA Annotation Review
Iron-Sulfur Cluster Biogenesis
Metabolic Model Analysis
METEA MLL Cluster
NITV2 Pathways
Over-Annotation Patterns
Pseudoenzymes
Phosphorylation Refactor
Swiss-Prot Keywords
Surveillance Immunity Curation
BioReason-Pro Comparison
Validating E. coli ML Predictions