Zebrafish accession audit

Zebrafish accession audit

Generated by projects/DANRE_DUPLICATION/scripts/accession_audit.py; do not edit by hand.

Experimental = EXP, HDA, HEP, HGI, HMP, HTP, IDA, IEP, IGI, IMP, IPI.

Summary

Gene Reviewed accession Status GOA annotations Experimental Accession with most experimental Experimental rows only on other accessions ...of which not covered by the review
cryaba Q9PUR2 unreviewed 14 7 Q9PUR2 0 0
cryabb A0A8M9Q8E3 unreviewed 17 6 A0A8M9Q8E3 0 0
mitfa Q9PWC2 unreviewed 30 19 Q9PWC2 0 0
mitfb F1Q885 unreviewed 13 3 F1Q885 0 0
pax6a P26630 reviewed 21 3 A0A8M3AZJ7 12 9
pax6b A0A0R4IQL7 unreviewed 59 21 Q9YHZ8 3 3
sox9a Q9DFH2 unreviewed 32 17 Q9DFH2 0 0
sox9b Q9DFH1 unreviewed 36 20 Q9DFH1 0 0
elna A0A8N1TQS2 unreviewed 4 0 A0A8N1TQS2 0 0
elnb A0A8M1NAS7 unreviewed 4 0 A0A8M1NAS7 0 0

Per gene

cryaba

Accession UniProt status GOA annotations Experimental Used in review
Q9PUR2 unreviewed 14 7 yes
A0A8N1Z0X0 unreviewed 2 0

cryabb

Accession UniProt status GOA annotations Experimental Used in review
A0A8M9Q8E3 unreviewed 17 6 yes
Q6DG35 unreviewed 12 6
A0A8M1N0V7 unreviewed 5 0

mitfa

Accession UniProt status GOA annotations Experimental Used in review
Q9PWC2 unreviewed 30 20 yes
A0A8M9Q5Y7 unreviewed 26 20
A0AB13A968 unreviewed 25 20
A0A8M1PAX2 unreviewed 4 0

mitfb

Accession UniProt status GOA annotations Experimental Used in review
F1Q885 unreviewed 13 3 yes
A0AB32TH68 unreviewed 9 3
A0AC58IIL7 unreviewed 9 3
A0A8M9PEV1 unreviewed 9 3
A0A8M1PCB7 unreviewed 4 0

pax6a

Accession UniProt status GOA annotations Experimental Used in review
A0A8M3AZJ7 unreviewed 26 12
A0A8M9P6C7 unreviewed 22 12
A0A8M3B718 unreviewed 22 12
A0AB32TDJ7 unreviewed 22 12
A0AC58IUB0 unreviewed 22 12
A0AC58IUA2 unreviewed 22 12
A0AC58IUA6 unreviewed 22 12
P26630 reviewed 21 3 yes
A0A8M3AP00 unreviewed 20 12
A0A0R4IXU2 unreviewed 10 0
A0AC58IU92 unreviewed 10 0
A0AC58IU81 unreviewed 10 0
A0AC58IU84 unreviewed 10 0
A0AC58IU82 unreviewed 10 0
A0AC58IU83 unreviewed 10 0
A0AC58IU85 unreviewed 10 0

Experimental annotations on other accessions but not on P26630:

GO term Evidence Reference Qualifier On accession(s) Term + reference already in review?
GO:0000981 IDA PMID:18282108 enables A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0000981 IDA PMID:9831649 enables A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0001755 IGI PMID:32555736 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 yes
GO:0005634 IDA PMID:7946344 located_in A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0009952 IMP PMID:17010333 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0010468 IGI PMID:24528677 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0021538 IGI PMID:24528677 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 yes
GO:0021986 IMP PMID:27387288 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 yes
GO:0030900 IGI PMID:12917294 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0030902 IMP PMID:17010333 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0043565 IDA PMID:8900176 enables A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no
GO:0045944 IDA PMID:9831649 acts_upstream_of_or_within A0A8M3AP00, A0A8M3AZJ7, A0A8M3B718, A0A8M9P6C7, A0AB32TDJ7, A0AC58IUA2, A0AC58IUA6, A0AC58IUB0 no

pax6b

Accession UniProt status GOA annotations Experimental Used in review
A0A0R4IQL7 unreviewed 59 40 yes
Q9YHZ8 unreviewed 53 43
A0A8M9PP46 unreviewed 50 40
A0A8M3B3W1 unreviewed 50 40
A0A8M9Q1T3 unreviewed 50 40
A0AC58G0G1 unreviewed 50 40
A0AC58G0L6 unreviewed 50 40
A0AC58G0J8 unreviewed 48 40
A0A8M2BG41 unreviewed 10 0
A0ACM8PZP3 unreviewed 10 0
A0AC58G0C0 unreviewed 8 0

Experimental annotations on other accessions but not on A0A0R4IQL7:

GO term Evidence Reference Qualifier On accession(s) Term + reference already in review?
GO:0008284 IMP PMID:20152834 involved_in Q9YHZ8 no
GO:0042670 IMP PMID:20152834 involved_in Q9YHZ8 no
GO:0060221 IMP PMID:20152834 involved_in Q9YHZ8 no

sox9a

Accession UniProt status GOA annotations Experimental Used in review
Q9DFH2 unreviewed 32 21 yes
A0ACM8PZW3 unreviewed 2 0

sox9b

Accession UniProt status GOA annotations Experimental Used in review
Q9DFH1 unreviewed 36 25 yes
A0ACM8PZN8 unreviewed 2 0

elna

Accession UniProt status GOA annotations Experimental Used in review
A0A8N1TQS2 unreviewed 4 0 yes

elnb

Accession UniProt status GOA annotations Experimental Used in review
A0A8M1NAS7 unreviewed 4 0 yes
A0A8M6YUG6 unreviewed 4 0
A0A8M6Z2Z8 unreviewed 4 0
A0AB32T7Y8 unreviewed 4 0
A0A8M6YV34 unreviewed 4 0
A0A8M6Z3N0 unreviewed 4 0
A0A8M9PTX8 unreviewed 4 0
A0AB32TEX8 unreviewed 4 0