sox9a / sox9b: annotation comparison
Generated by projects/DANRE_DUPLICATION/scripts/compare_pair.py; do not edit by hand.
Proteins
| sox9a | sox9b | |
|---|---|---|
| UniProt | Q9DFH2 | Q9DFH1 |
| Length (aa) | 462 | 407 |
Global alignment (BLOSUM62, gap -10/-0.5): 61.3% identity, 68.8% similarity over 478 alignment columns.
Existing annotations by term
Cells show evidence:action. — means the copy has no annotation to that exact term (it may still have a parent or child term).
MF
| Term | sox9a | sox9b |
|---|---|---|
| GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding | IBA:ACCEPT | IBA:ACCEPT |
| GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific | IBA:ACCEPT | IBA:ACCEPT |
| GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific | IDA:NEW | IDA:NEW |
| GO:0003677 DNA binding | IEA:ACCEPT | IEA:ACCEPT |
| GO:0003682 chromatin binding | IDA:ACCEPT | — |
| GO:0005515 protein binding | IPI:REMOVE | — |
BP
| Term | sox9a | sox9b |
|---|---|---|
| GO:0000122 negative regulation of transcription by RNA polymerase II | IBA:KEEP_AS_NON_CORE | IBA:KEEP_AS_NON_CORE |
| GO:0002009 morphogenesis of an epithelium | IBA:KEEP_AS_NON_CORE | IBA:KEEP_AS_NON_CORE |
| GO:0002062 chondrocyte differentiation | IBA:ACCEPT | IBA:ACCEPT |
| GO:0003170 heart valve development | — | IMP:KEEP_AS_NON_CORE |
| GO:0003309 type B pancreatic cell differentiation | — | IMP:KEEP_AS_NON_CORE |
| GO:0003342 proepicardium development | — | IMP:KEEP_AS_NON_CORE |
| GO:0007507 heart development | IBA:MARK_AS_OVER_ANNOTATED | IBA:KEEP_AS_NON_CORE |
| GO:0030318 melanocyte differentiation | — | IMP:UNDECIDED |
| GO:0030916 otic vesicle formation | IGI:KEEP_AS_NON_CORE | IGI:KEEP_AS_NON_CORE |
| GO:0031016 pancreas development | — | IMP:ACCEPT |
| GO:0031018 endocrine pancreas development | — | IMP:KEEP_AS_NON_CORE |
| GO:0031099 regeneration | — | IMP:MODIFY |
| GO:0032332 positive regulation of chondrocyte differentiation | IBA:ACCEPT | IBA:ACCEPT |
| GO:0033339 pectoral fin development | IMP:KEEP_AS_NON_CORE | — |
| GO:0035118 embryonic pectoral fin morphogenesis | IMP:KEEP_AS_NON_CORE | IMP:KEEP_AS_NON_CORE |
| GO:0043049 otic placode formation | IGI:KEEP_AS_NON_CORE | IGI:KEEP_AS_NON_CORE IMP:KEEP_AS_NON_CORE |
| GO:0048708 astrocyte differentiation | IMP:KEEP_AS_NON_CORE | — |
| GO:0048709 oligodendrocyte differentiation | IBA:KEEP_AS_NON_CORE IMP:KEEP_AS_NON_CORE |
IBA:KEEP_AS_NON_CORE |
| GO:0048839 inner ear development | IGI:KEEP_AS_NON_CORE IMP:KEEP_AS_NON_CORE |
IGI:KEEP_AS_NON_CORE IMP:KEEP_AS_NON_CORE |
| GO:0050935 iridophore differentiation | — | IMP:UNDECIDED |
| GO:0051216 cartilage development | IMP:ACCEPT | IMP:ACCEPT |
| GO:0060021 roof of mouth development | — | IMP:KEEP_AS_NON_CORE |
| GO:0060041 retina development in camera-type eye | — | IMP:KEEP_AS_NON_CORE |
| GO:0060536 cartilage morphogenesis | IMP:ACCEPT | — |
| GO:0061008 hepaticobiliary system development | — | IMP:ACCEPT |
| GO:0061032 visceral serous pericardium development | — | IMP:KEEP_AS_NON_CORE |
CC
| Term | sox9a | sox9b |
|---|---|---|
| GO:0005634 nucleus | IBA:ACCEPT IEA:ACCEPT |
IBA:ACCEPT IEA:ACCEPT |
| GO:0005737 cytoplasm | IMP:MARK_AS_OVER_ANNOTATED | — |
Core molecular functions
- sox9a: GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific
- sox9b: GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific